BO31927.complete Sequence
1351 bp assembled on 2012-10-18
GenBank Submission: KX794245
> BO31927.complete
GAAGTTATCAGTCGACATGAAAACTGAGTCCAACGAGAAGTGGGTGGTGT
GCCGCGTTTGCCTGAACAATCCCAGCGAGGGCGAGGAGCTGCTCCACGAC
ATATTCAGCGAAACGGCAAGCACGCGACTGGACCAAATGCTGCACATTTG
CGCAGGCATTCCAGTCAGCCTAGATGACAACTTCCCGGACAAGATGTGCA
GCAAGTGCGTGCGCTGCCTGCGGCTCTGCTACAAGTTCCGTCTGACATGC
CAGCGATCCCATCAGCACATTATGGACATGCTGGACCGGGAGGCCAGCAA
TGCTAACGCCGCCGGCGAAGGGGATTTGCTTAGCATCGCGGAGGACCTTT
CGGTGGAGAGCGTACTGAAGTCGTGGGAGGACTACGCCAGTCAGCTGGAT
GGCGGCATGAAAGTGGAGGGCGAGGAGGATCAGCAACATCAGGTTATCAC
CTATGTCGTGGAGGATGGTGATACTGATGATACCAATATGTTCGATGTGC
ACGATCCCACGCAGCCGGTGCCAAATGAGATCGAGGAGGCTGAAACCTAT
GCTGAATACGAGGAATACGAACTGCTCACCAACGAAAACTCGCCGGAAAT
CGCACAGGAAAAAGGCTCCACCGGCACAGATGTTGCCACAGAGGAGCCGC
CCGAAGAAGAAATTGCTGAAGACATACTCGACTCTGACGAAGATTATGAC
CCAACTCATGCTAAGCCGGAAAAATGCGACCGATCGGGCAGGAAGCCAGT
TGCATACCACAAGAATAGCCCAAAAGTGGAAACCTTCAAAAAGAAGGTGG
GCAGAAAGCCGCGCAACAAGCTGAGCACATACATCTGCGATGTGTGCGGA
AATATCTATCCGACTCAGGCGCGTCTCACCGAGCACATGAAATTCCATTC
TGGTGTTAAACCACACGAGTGCGAGATCTGCGGAAGAGGCTTTGTGCAGA
ATCAACAGCTGGTACGGCACATGAACACTCACACGGGGAACCGACCATAC
AAGTGCAACTACTGTCCAGCTGCCTTCGCCGATCGATCCACGAAAACCAA
ACATCATAGAATTCACACTAAGGAGCGTCCCTACGTGTGCGACGTTTGCT
CCAGAACGTTTACCTACTCGGACAACCTGAAGTTCCACAAGATGATTCAC
ACGGGGGAGAAGCCGCATGTCTGTGATCTTTGTGGCAAAGGATTTGTGAA
GGCCTACAAATTGCGTTTGCATCGGGAAACGCATAATAGACGTATCACCT
GGAGAAATGACGCAGAAGAGAGCACCAAAGCAGAAGATGTCAAGGGGGAA
ACGCCGGAGTTTCTCAATGAACTCCCCAAAGAGGCAAGCTTTCTAGACCA
T
BO31927.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:54:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
trem-RA | 1320 | CG4413-PA | 1..1317 | 17..1333 | 6585 | 100 | Plus |
CG4936-RA | 1566 | CG4936-PA | 1078..1464 | 830..1216 | 570 | 76.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:54:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
trem-RA | 1525 | CG4413-RA | 99..1416 | 16..1333 | 6590 | 100 | Plus |
CG4936-RA | 1824 | CG4936-RA | 1195..1581 | 830..1216 | 570 | 76.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:53:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20030248..20031009 | 925..164 | 3810 | 100 | Minus |
3R | 32079331 | 3R | 20029669..20029831 | 1333..1171 | 815 | 100 | Minus |
3R | 32079331 | 3R | 20031062..20031211 | 165..16 | 750 | 100 | Minus |
3R | 32079331 | 3R | 20030058..20030192 | 1059..925 | 675 | 100 | Minus |
3R | 32079331 | 3R | 20029891..20030003 | 1170..1058 | 565 | 100 | Minus |
3R | 32079331 | 3R | 20033514..20033623 | 1058..1167 | 235 | 80.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:54:00 has no hits.
BO31927.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-18 15:59:09 Download gff for
BO31927.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
trem-RA | 94..1410 | 17..1335 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:57:21 Download gff for
BO31927.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
trem-RA | 94..1410 | 17..1335 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:16:22 Download gff for
BO31927.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
trem-RA | 100..1416 | 17..1335 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:16:22 Download gff for
BO31927.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20029665..20029831 | 1171..1335 | 98 | <- | Minus |
3R | 20029891..20030001 | 1060..1170 | 100 | <- | Minus |
3R | 20030058..20030192 | 925..1059 | 100 | <- | Minus |
3R | 20030249..20031009 | 164..924 | 100 | <- | Minus |
3R | 20031064..20031210 | 17..163 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:57:21 Download gff for
BO31927.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15855780..15855914 | 925..1059 | 100 | <- | Minus |
arm_3R | 15855387..15855553 | 1171..1335 | 98 | <- | Minus |
arm_3R | 15855613..15855723 | 1060..1170 | 100 | <- | Minus |
arm_3R | 15855971..15856731 | 164..924 | 100 | <- | Minus |
arm_3R | 15856786..15856932 | 17..163 | 100 | | Minus |
BO31927.pep Sequence
Translation from 16 to 1351
> BO31927.pep
MKTESNEKWVVCRVCLNNPSEGEELLHDIFSETASTRLDQMLHICAGIPV
SLDDNFPDKMCSKCVRCLRLCYKFRLTCQRSHQHIMDMLDREASNANAAG
EGDLLSIAEDLSVESVLKSWEDYASQLDGGMKVEGEEDQQHQVITYVVED
GDTDDTNMFDVHDPTQPVPNEIEEAETYAEYEEYELLTNENSPEIAQEKG
STGTDVATEEPPEEEIAEDILDSDEDYDPTHAKPEKCDRSGRKPVAYHKN
SPKVETFKKKVGRKPRNKLSTYICDVCGNIYPTQARLTEHMKFHSGVKPH
ECEICGRGFVQNQQLVRHMNTHTGNRPYKCNYCPAAFADRSTKTKHHRIH
TKERPYVCDVCSRTFTYSDNLKFHKMIHTGEKPHVCDLCGKGFVKAYKLR
LHRETHNRRITWRNDAEESTKAEDVKGETPEFLNELPKEASFLDH
BO31927.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:59:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
trem-PA | 439 | CG4413-PA | 1..439 | 1..439 | 2397 | 100 | Plus |
CG4936-PA | 521 | CG4936-PA | 16..497 | 5..409 | 819 | 40 | Plus |
CG14710-PB | 415 | CG14710-PB | 10..405 | 12..419 | 479 | 28.2 | Plus |
CG4854-PA | 319 | CG4854-PA | 93..314 | 173..408 | 471 | 41.2 | Plus |
CG14711-PA | 377 | CG14711-PA | 3..374 | 8..420 | 431 | 27.7 | Plus |
CG4854-PA | 319 | CG4854-PA | 1..317 | 1..353 | 218 | 21.8 | Plus |