Clone BO31927 Report

Search the DGRC for BO31927

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:319
Well:27
Vector:pDNR-Dual
Associated Gene/Transcripttrem-RA
Protein status:BO31927.pep: Imported from assembly
Sequenced Size:1351

Clone Sequence Records

BO31927.complete Sequence

1351 bp assembled on 2012-10-18

GenBank Submission: KX794245

> BO31927.complete
GAAGTTATCAGTCGACATGAAAACTGAGTCCAACGAGAAGTGGGTGGTGT
GCCGCGTTTGCCTGAACAATCCCAGCGAGGGCGAGGAGCTGCTCCACGAC
ATATTCAGCGAAACGGCAAGCACGCGACTGGACCAAATGCTGCACATTTG
CGCAGGCATTCCAGTCAGCCTAGATGACAACTTCCCGGACAAGATGTGCA
GCAAGTGCGTGCGCTGCCTGCGGCTCTGCTACAAGTTCCGTCTGACATGC
CAGCGATCCCATCAGCACATTATGGACATGCTGGACCGGGAGGCCAGCAA
TGCTAACGCCGCCGGCGAAGGGGATTTGCTTAGCATCGCGGAGGACCTTT
CGGTGGAGAGCGTACTGAAGTCGTGGGAGGACTACGCCAGTCAGCTGGAT
GGCGGCATGAAAGTGGAGGGCGAGGAGGATCAGCAACATCAGGTTATCAC
CTATGTCGTGGAGGATGGTGATACTGATGATACCAATATGTTCGATGTGC
ACGATCCCACGCAGCCGGTGCCAAATGAGATCGAGGAGGCTGAAACCTAT
GCTGAATACGAGGAATACGAACTGCTCACCAACGAAAACTCGCCGGAAAT
CGCACAGGAAAAAGGCTCCACCGGCACAGATGTTGCCACAGAGGAGCCGC
CCGAAGAAGAAATTGCTGAAGACATACTCGACTCTGACGAAGATTATGAC
CCAACTCATGCTAAGCCGGAAAAATGCGACCGATCGGGCAGGAAGCCAGT
TGCATACCACAAGAATAGCCCAAAAGTGGAAACCTTCAAAAAGAAGGTGG
GCAGAAAGCCGCGCAACAAGCTGAGCACATACATCTGCGATGTGTGCGGA
AATATCTATCCGACTCAGGCGCGTCTCACCGAGCACATGAAATTCCATTC
TGGTGTTAAACCACACGAGTGCGAGATCTGCGGAAGAGGCTTTGTGCAGA
ATCAACAGCTGGTACGGCACATGAACACTCACACGGGGAACCGACCATAC
AAGTGCAACTACTGTCCAGCTGCCTTCGCCGATCGATCCACGAAAACCAA
ACATCATAGAATTCACACTAAGGAGCGTCCCTACGTGTGCGACGTTTGCT
CCAGAACGTTTACCTACTCGGACAACCTGAAGTTCCACAAGATGATTCAC
ACGGGGGAGAAGCCGCATGTCTGTGATCTTTGTGGCAAAGGATTTGTGAA
GGCCTACAAATTGCGTTTGCATCGGGAAACGCATAATAGACGTATCACCT
GGAGAAATGACGCAGAAGAGAGCACCAAAGCAGAAGATGTCAAGGGGGAA
ACGCCGGAGTTTCTCAATGAACTCCCCAAAGAGGCAAGCTTTCTAGACCA
T

BO31927.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:54:01
Subject Length Description Subject Range Query Range Score Percent Strand
trem-RA 1320 CG4413-PA 1..1317 17..1333 6585 100 Plus
CG4936-RA 1566 CG4936-PA 1078..1464 830..1216 570 76.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:54:02
Subject Length Description Subject Range Query Range Score Percent Strand
trem-RA 1525 CG4413-RA 99..1416 16..1333 6590 100 Plus
CG4936-RA 1824 CG4936-RA 1195..1581 830..1216 570 76.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:53:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20030248..20031009 925..164 3810 100 Minus
3R 32079331 3R 20029669..20029831 1333..1171 815 100 Minus
3R 32079331 3R 20031062..20031211 165..16 750 100 Minus
3R 32079331 3R 20030058..20030192 1059..925 675 100 Minus
3R 32079331 3R 20029891..20030003 1170..1058 565 100 Minus
3R 32079331 3R 20033514..20033623 1058..1167 235 80.9 Plus
Blast to na_te.dros performed on 2014-11-28 12:54:00 has no hits.

BO31927.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-18 15:59:09 Download gff for BO31927.complete
Subject Subject Range Query Range Percent Splice Strand
trem-RA 94..1410 17..1335 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:57:21 Download gff for BO31927.complete
Subject Subject Range Query Range Percent Splice Strand
trem-RA 94..1410 17..1335 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:16:22 Download gff for BO31927.complete
Subject Subject Range Query Range Percent Splice Strand
trem-RA 100..1416 17..1335 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:16:22 Download gff for BO31927.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20029665..20029831 1171..1335 98 <- Minus
3R 20029891..20030001 1060..1170 100 <- Minus
3R 20030058..20030192 925..1059 100 <- Minus
3R 20030249..20031009 164..924 100 <- Minus
3R 20031064..20031210 17..163 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:57:21 Download gff for BO31927.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15855780..15855914 925..1059 100 <- Minus
arm_3R 15855387..15855553 1171..1335 98 <- Minus
arm_3R 15855613..15855723 1060..1170 100 <- Minus
arm_3R 15855971..15856731 164..924 100 <- Minus
arm_3R 15856786..15856932 17..163 100   Minus

BO31927.pep Sequence

Translation from 16 to 1351

> BO31927.pep
MKTESNEKWVVCRVCLNNPSEGEELLHDIFSETASTRLDQMLHICAGIPV
SLDDNFPDKMCSKCVRCLRLCYKFRLTCQRSHQHIMDMLDREASNANAAG
EGDLLSIAEDLSVESVLKSWEDYASQLDGGMKVEGEEDQQHQVITYVVED
GDTDDTNMFDVHDPTQPVPNEIEEAETYAEYEEYELLTNENSPEIAQEKG
STGTDVATEEPPEEEIAEDILDSDEDYDPTHAKPEKCDRSGRKPVAYHKN
SPKVETFKKKVGRKPRNKLSTYICDVCGNIYPTQARLTEHMKFHSGVKPH
ECEICGRGFVQNQQLVRHMNTHTGNRPYKCNYCPAAFADRSTKTKHHRIH
TKERPYVCDVCSRTFTYSDNLKFHKMIHTGEKPHVCDLCGKGFVKAYKLR
LHRETHNRRITWRNDAEESTKAEDVKGETPEFLNELPKEASFLDH

BO31927.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:59:01
Subject Length Description Subject Range Query Range Score Percent Strand
trem-PA 439 CG4413-PA 1..439 1..439 2397 100 Plus
CG4936-PA 521 CG4936-PA 16..497 5..409 819 40 Plus
CG14710-PB 415 CG14710-PB 10..405 12..419 479 28.2 Plus
CG4854-PA 319 CG4854-PA 93..314 173..408 471 41.2 Plus
CG14711-PA 377 CG14711-PA 3..374 8..420 431 27.7 Plus
CG4854-PA 319 CG4854-PA 1..317 1..353 218 21.8 Plus