BO31928.complete Sequence
1792 bp assembled on 2012-05-15
GenBank Submission: KX795700
> BO31928.complete
GAAGTTATCAGTCGACATGAGCTCTTTTCTCATGGGTTATCCGCATGCAC
CACATCATGTCCAGAGTCCCATGTCCATGGGCAATGGCTTGGACCCAAAG
TTTCCGCCGTTGGCCGATGACTATCATCACTACAATGGACACTATTCGAT
GACCGCATCTACGGGTCATATGAGTGGTGCCGTCGGCGGTGGTGCAGGTG
TTGGGTCTGTCGGAGGTGGTGGAGCAGGTGGGATGACTGGTCATCCGCAT
TCCATGCACCCGGCGGACATGGTCAGTGACTATATGGCGCATCACCACAA
TCCGCACAGCCACTCCCATTCGCACACCCACTCACTACCGCACCACCATA
GCAACAGTGCAATATCTGGACACCACCAGGCATCCGCCGGCGGTTACAGT
TCCAATTATGCCAATGCCACTCCGCCCTCACATCCGCACTCGCATCCACA
CGCCCATCCGCACCAGAGCCTCGGCTATTACGTCCACCACGCCCCCGAAT
TCATATCCGCAGGAGCGGTGCACTCCGATCCCACGAACGGATACGGACCG
GCGGCAAACGTTCCAAATACGAGCAATGGCGGTGGTGGCGGAGGAAGTGG
CGCAGTGCTCGGAGGTGGCGCAGTGGGTGGATCGGCAAATGGATATTACG
GCGGGTACGGTGGGGGTTATGGGACGGCGAACGGAAGTGTGGGCAGCACC
CACTCCCAAGGACACTCGCCGCACTCCCAGATGATGGATCTGCCCCTTCA
GTGCAGCTCCACGGAACCACCGACGAACACGGCGCTGGGACTGCAGGAAT
TAGGCCTAAAACTAGAAAAACGCATAGAAGAAGCTGTACCTGCCGGACAA
CAACTGCAAGAGCTAGGGATGCGATTGCGGTGTGATGATATGGGATCCGA
AAACGACGATATGTCAGAGGAGGATCGGCTCATGCTGGATCGATCTCCAG
ACGAGCTGGGCTCCAACGACAACGACGACGACCTCGGGGACTCAGACAGC
GATGAGGATCTGATGGCGGAGACGACCGATGGCGAACGGATCATCTACCC
CTGGATGAAGAAGATCCATGTGGCGGGAGTTGCGAACGGGTCTTACCAGC
CGGGAATGGAGCCAAAACGCCAACGCACCGCCTACACACGCCATCAGATC
CTGGAACTGGAAAAGGAGTTCCACTACAACCGCTACCTGACGCGTCGGCG
GCGCATCGAGATTGCCCATACGTTAGTTCTCTCGGAGCGGCAGATCAAGA
TCTGGTTCCAGAACAGGCGCATGAAGTGGAAGAAGGACAACAAGCTGCCC
AACACCAAGAACGTGCGCAAGAAGACGGTGGACGCCAACGGCAACCCAAC
ACCGGTAGCGAAGAAACCCACCAAGCGGGCCGCCTCCAAAAAGCAGCAGC
AAGCGCAGCAGCAGCAGCAGTCGCAGCAGCAGCAGACGCAGCAGACTCCG
GTGATGAATGAGTGCATTCGTTCCGACAGTTTGGAGAGTATCGGTGACGT
CAGCTCGTCCCTGGGCAATCCGCCCTATATACCGGCGGCACCTGAGACGA
CCAGCTCTTATCCGGGATCTCAGCAGCACCTCAGCAATAACAACAACAAT
GGCAGCGGCAATAACAATAATAACAACAACAACAACAACAGCAACCTCAA
TAACAATAACAATAACAATCAAATGGGTCACACGAATCTGCATGGGCACC
TTCAACAGCAACAATCCGATCTCATGACCAATCTTCAGCTACACATCAAG
CAGGACTACGATCTGACGGCCCTGGCAAGCTTTCTAGACCAT
BO31928.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:19:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dfd-RA | 1761 | CG2189-PA | 1..1758 | 17..1774 | 8790 | 100 | Plus |
Scr-RB | 1254 | CG1030-PB | 973..1152 | 1115..1294 | 450 | 83.3 | Plus |
Scr-RA | 1254 | CG1030-PA | 973..1152 | 1115..1294 | 450 | 83.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:19:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dfd-RA | 2739 | CG2189-RA | 489..2247 | 16..1774 | 8795 | 100 | Plus |
Scr-RB | 3987 | CG1030-RB | 1444..1623 | 1115..1294 | 450 | 83.3 | Plus |
Scr-RA | 4140 | CG1030-RA | 1597..1776 | 1115..1294 | 450 | 83.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:19:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6792324..6793112 | 16..804 | 3945 | 100 | Plus |
3R | 32079331 | 3R | 6800978..6801358 | 1082..1462 | 1905 | 100 | Plus |
3R | 32079331 | 3R | 6801623..6801936 | 1461..1774 | 1570 | 100 | Plus |
3R | 32079331 | 3R | 6793663..6793840 | 905..1082 | 890 | 100 | Plus |
3R | 32079331 | 3R | 6793495..6793598 | 802..905 | 520 | 100 | Plus |
3R | 32079331 | 3R | 6825484..6825663 | 1294..1115 | 450 | 83.3 | Minus |
3R | 32079331 | 3R | 6898354..6898485 | 1294..1163 | 300 | 81.8 | Minus |
3R | 32079331 | 3R | 16658884..16659038 | 1287..1133 | 250 | 77.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 11:19:50 has no hits.
BO31928.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-15 10:36:37 Download gff for
BO31928.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dfd-RA | 490..2247 | 17..1776 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:57 Download gff for
BO31928.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dfd-RA | 490..2247 | 17..1776 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:40:36 Download gff for
BO31928.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dfd-RA | 490..2247 | 17..1776 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:40:36 Download gff for
BO31928.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6792325..6793111 | 17..803 | 100 | -> | Plus |
3R | 6793497..6793597 | 804..904 | 100 | -> | Plus |
3R | 6793663..6793840 | 905..1082 | 100 | -> | Plus |
3R | 6800979..6801358 | 1083..1462 | 100 | -> | Plus |
3R | 6801625..6801936 | 1463..1776 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:57 Download gff for
BO31928.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2626701..2627080 | 1083..1462 | 100 | -> | Plus |
arm_3R | 2618047..2618833 | 17..803 | 100 | -> | Plus |
arm_3R | 2619219..2619319 | 804..904 | 100 | -> | Plus |
arm_3R | 2619385..2619562 | 905..1082 | 100 | -> | Plus |
arm_3R | 2627347..2627658 | 1463..1776 | 99 | | Plus |
BO31928.pep Sequence
Translation from 16 to 1792
> BO31928.pep
MSSFLMGYPHAPHHVQSPMSMGNGLDPKFPPLADDYHHYNGHYSMTASTG
HMSGAVGGGAGVGSVGGGGAGGMTGHPHSMHPADMVSDYMAHHHNPHSHS
HSHTHSLPHHHSNSAISGHHQASAGGYSSNYANATPPSHPHSHPHAHPHQ
SLGYYVHHAPEFISAGAVHSDPTNGYGPAANVPNTSNGGGGGGSGAVLGG
GAVGGSANGYYGGYGGGYGTANGSVGSTHSQGHSPHSQMMDLPLQCSSTE
PPTNTALGLQELGLKLEKRIEEAVPAGQQLQELGMRLRCDDMGSENDDMS
EEDRLMLDRSPDELGSNDNDDDLGDSDSDEDLMAETTDGERIIYPWMKKI
HVAGVANGSYQPGMEPKRQRTAYTRHQILELEKEFHYNRYLTRRRRIEIA
HTLVLSERQIKIWFQNRRMKWKKDNKLPNTKNVRKKTVDANGNPTPVAKK
PTKRAASKKQQQAQQQQQSQQQQTQQTPVMNECIRSDSLESIGDVSSSLG
NPPYIPAAPETTSSYPGSQQHLSNNNNNGSGNNNNNNNNNNSNLNNNNNN
NQMGHTNLHGHLQQQQSDLMTNLQLHIKQDYDLTALASFLDH
BO31928.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:34:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dfd-PA | 586 | CG2189-PA | 1..586 | 1..586 | 3194 | 100 | Plus |
Scr-PB | 417 | CG1030-PB | 15..385 | 23..427 | 342 | 29.8 | Plus |
Scr-PA | 417 | CG1030-PA | 15..385 | 23..427 | 342 | 29.8 | Plus |
abd-A-PD | 330 | CG10325-PD | 109..247 | 344..476 | 302 | 51.4 | Plus |
abd-A-PC | 330 | CG10325-PC | 109..247 | 344..476 | 302 | 51.4 | Plus |