BO31932.complete Sequence
2161 bp assembled on 2012-05-15
GenBank Submission: KX794854
> BO31932.complete
GAAGTTATCAGTCGACATGGCTGCCTACACACAATTCGGATACGGAGGCT
TTCCGTCGGCCTCGCAGCTCCTGCCACCGAGTGTCCAGACGACGGAGGAC
GCTTCCGCGAACGTGAATGTGAATGTGAACGAGGCGCTGGTGATGACAAA
CGCCCCGGCGATGAGCCCCACGGGAGGTCAGGATTGTCAGGGTAGCCAGC
CGTCGGGCGGCGCTGGCGGAGATGCCTCCTCGGGGGCGCTGAGTCCCAAT
GCGCTTTCGCAGAACTCGAATGCGGCGACGGTGGTTGGAGCAGGTGGTGG
ATCCTCGGCGGGCGGAGGAGGTCCAGCGGATCTGGCCACCGGTGGCTCCC
TGGACGGCAACGGCGTGGGCACGACGCCCACTGCTGGTGGTGCTGGTGGT
GGTGGATCATGCTGTGAGAACGGGCGGCCCATAATGACCGACCCGGTGTC
GGGTCAGACGGTCTGCTCCTGCCAGTACGATTCCGCCCGCCTCGCCCTCT
CCAGCTACTCCCGTCTACCGGCGGCCAGCGTTGGCGTCTATGGAACGCCG
TACCCCTCAACGGACCAGAATCCCTACCAGAGCATCGGAGTGGACAGCTC
CGCCTTCTATTCGCCGCTGAGCAATCCGTACGGACTTAAGGATACGGGCG
CGGGTCCGGAAATGGGAGCTTGGACCTCGGCTGGACTTCAGCCCACTACG
GGCTACTACTCCTACGATCCCATGTCGGCCTACGGCTATGGAGCCAGTTA
CGACCTGGCTGCTCGTCGCAAAAATGCCACGCGGGAATCCACGGCCACAT
TGAAGGCCTGGCTAAATGAGCACAAGAAGAATCCGTATCCCACAAAGGGT
GAGAAGATCATGCTGGCCATCATCACCAAGATGACCCTCACCCAGGTGTC
CACTTGGTTCGCCAATGCGCGTCGGCGACTGAAGAAGGAGAACAAGATGA
CGTGGGAGCCCAAGAATCGCACAGATGACGATGATGACGCCTTGGTGTCG
GACGATGAGAAGGACAAGGAGGATCTGGAGCCGAGTAAGGGCAGCCAGGG
CAGTGTCAGTTTGGCCAAAGATGAGACCAAAGAGGAGGAGGATGCCATAG
ATGAGGACCAAAAGTGCCTCGGTCAGGCGAACATACTGCGCGCCGGCTTT
GGTTATCCCTCAGCCGGAAGTGGTAGTGGTGGTTACCCCGGCGGAGGTGG
CTCCTCCAGTGGCCACCCCGGTGGCTACCATCCGTATCATCATCAGCATC
CCGCTTACTATCAGGCTGGCCAGCAGGGCGGTATGTTGCCATTTCATGGG
GAGAACTCCAAACTGCAGACGGATCTTGGGGATCCAAAAAACCAGCTAGG
CCGGGACTGTGGCGTGCCGATTCCAGCTACCAAGCCGAAGATCTGGAGTC
TGGCCGACACAGTTGGCTGCAAGACACCGCCGCCGGCTTACATGGGTCAC
CAATCGATGCCTCTGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCA
GGCGCAGCACCAGTATCCTCCATCGGAGGCAGGACGAGATCAACAGCTGT
TCAATGGGGCCGCAGCTCCATACCTGAGGCCGCACACCACGGCCTACGGG
GGTTTTCTAGGGGCTACGACCCAGCAACTGCATACTACGAACAACAGTAT
CCCCTACAGCAATATGCCCCCGCAGCAGCAGCAGCCGCAGCAGCAGCAGC
AGCAGTTGCAGCAGGGCGGTACCATCCATACTACGGGAAGTTCGAGCGGA
CCAATAATACCGCTGCAGTTCCACAATCGGCATCCGCAGCAGCAGCAGCA
ACTGCAGCAGCAATCTCAATCCACAGCGAGTCAGCGGGCGATGGGGTTTC
TCGAAGCCCAACCAGATACTCCACCCCAAACTCCGCCGAATATGAAGGTG
CTGAGCGGAGCTTTGAGTCTCCTGCCTACCGCTACTCAAGTCCCTATGAC
CGCTACCTGTCGCAGTAGTAACGCCTTTGGCTTCCCCGCCAGCGGTTACC
CGATGAATTTCTCGGCCAGATTGGGGGAGTATTCGCCGCGTGATGATTAC
AGCAGCGGGAACAGCAGCAGCAGCAGCTCCTCATCGCCGCAGCTGCAAAG
GAATGAGGCCATGTTCAAGCCGCTCTTCAAGAAGTTCACCAACGCAAGCT
TTCTAGACCAT
BO31932.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:19:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ara-RB | 2130 | CG10571-PB | 1..2127 | 17..2143 | 10620 | 100 | Plus |
| ara-RA | 2154 | CG10571-PA | 743..2151 | 735..2143 | 7045 | 100 | Plus |
| ara-RA | 2154 | CG10571-PA | 1..719 | 17..735 | 3580 | 99.9 | Plus |
| caup-RA | 2082 | CG10605-PA | 448..941 | 530..1020 | 1025 | 81 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:20:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ara-RB | 2918 | CG10571-RB | 428..2558 | 13..2143 | 10625 | 99.9 | Plus |
| ara-RA | 2942 | CG10571-RA | 1174..2582 | 735..2143 | 7045 | 100 | Plus |
| ara-RA | 2942 | CG10571-RA | 428..1150 | 13..735 | 3585 | 99.7 | Plus |
| caup-RA | 4317 | CG10605-RA | 1586..2079 | 530..1020 | 1025 | 81 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:19:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12594584..12595658 | 1069..2143 | 5375 | 100 | Plus |
| 3L | 28110227 | 3L | 12585738..12586293 | 64..619 | 2765 | 99.8 | Plus |
| 3L | 28110227 | 3L | 12594188..12594523 | 735..1070 | 1680 | 100 | Plus |
| 3L | 28110227 | 3L | 12618382..12618626 | 776..1020 | 850 | 89.8 | Plus |
| 3L | 28110227 | 3L | 12707412..12707622 | 776..986 | 590 | 85.3 | Plus |
| 3L | 28110227 | 3L | 12589518..12589634 | 619..735 | 585 | 100 | Plus |
| 3L | 28110227 | 3L | 12581099..12581153 | 13..67 | 260 | 98.2 | Plus |
| 3L | 28110227 | 3L | 12619948..12620046 | 1336..1434 | 210 | 80.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 11:19:58 has no hits.
BO31932.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-15 10:36:39 Download gff for
BO31932.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ara-RB | 430..2556 | 17..2145 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:00 Download gff for
BO31932.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ara-RB | 432..2558 | 17..2145 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:40:38 Download gff for
BO31932.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ara-RB | 432..2558 | 17..2145 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:40:38 Download gff for
BO31932.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12581103..12581153 | 17..67 | 100 | -> | Plus |
| 3L | 12585742..12586293 | 68..619 | 99 | -> | Plus |
| 3L | 12589519..12589634 | 620..735 | 100 | -> | Plus |
| 3L | 12594189..12594523 | 736..1070 | 100 | -> | Plus |
| 3L | 12594586..12595658 | 1071..2145 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:00 Download gff for
BO31932.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12582619..12582734 | 620..735 | 100 | -> | Plus |
| arm_3L | 12574203..12574253 | 17..67 | 100 | -> | Plus |
| arm_3L | 12578842..12579393 | 68..619 | 99 | -> | Plus |
| arm_3L | 12587289..12587623 | 736..1070 | 100 | -> | Plus |
| arm_3L | 12587686..12588758 | 1071..2145 | 99 | | Plus |
BO31932.pep Sequence
Translation from 16 to 2161
> BO31932.pep
MAAYTQFGYGGFPSASQLLPPSVQTTEDASANVNVNVNEALVMTNAPAMS
PTGGQDCQGSQPSGGAGGDASSGALSPNALSQNSNAATVVGAGGGSSAGG
GGPADLATGGSLDGNGVGTTPTAGGAGGGGSCCENGRPIMTDPVSGQTVC
SCQYDSARLALSSYSRLPAASVGVYGTPYPSTDQNPYQSIGVDSSAFYSP
LSNPYGLKDTGAGPEMGAWTSAGLQPTTGYYSYDPMSAYGYGASYDLAAR
RKNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFAN
ARRRLKKENKMTWEPKNRTDDDDDALVSDDEKDKEDLEPSKGSQGSVSLA
KDETKEEEDAIDEDQKCLGQANILRAGFGYPSAGSGSGGYPGGGGSSSGH
PGGYHPYHHQHPAYYQAGQQGGMLPFHGENSKLQTDLGDPKNQLGRDCGV
PIPATKPKIWSLADTVGCKTPPPAYMGHQSMPLQQQQQQQQQQQQAQHQY
PPSEAGRDQQLFNGAAAPYLRPHTTAYGGFLGATTQQLHTTNNSIPYSNM
PPQQQQPQQQQQQLQQGGTIHTTGSSSGPIIPLQFHNRHPQQQQQLQQQS
QSTASQRAMGFLEAQPDTPPQTPPNMKVLSGALSLLPTATQVPMTATCRS
SNAFGFPASGYPMNFSARLGEYSPRDDYSSGNSSSSSSSSPQLQRNEAMF
KPLFKKFTNASFLDH
BO31932.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:34:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ara-PB | 709 | CG10571-PB | 1..709 | 1..709 | 3781 | 100 | Plus |
| ara-PA | 717 | CG10571-PA | 1..717 | 1..709 | 3762 | 98.9 | Plus |
| caup-PA | 693 | CG10605-PA | 1..609 | 1..630 | 1301 | 46.4 | Plus |
| mirr-PB | 641 | CG10601-PB | 47..473 | 47..485 | 619 | 40.4 | Plus |
| mirr-PA | 641 | CG10601-PA | 47..473 | 47..485 | 619 | 40.4 | Plus |
