BO32034.complete Sequence
2203 bp assembled on 2012-05-15
GenBank Submission: KX795370
> BO32034.complete
GAAGTTATCAGTCGACATGACCACGTCGGCGTCCTTGGAGAGGACCCCCT
CAAAGCGGGATCGAGATCGCGAGCGGGACAACAGCAGCGGTCTGGGCAGC
GCTGGCAGCTTGCCCGCATCGCCCCAAAGCGCTATCACGGTGAGTCCGTC
CTCCCCAGCCACGCCGAAGCGCCCGCTGCGCACCTCAACGCCCTCGCTGG
AGCGGAAGAGGGAGCGTGAGGATCGAGAGGACCGGGAGGATCGCAAGGAG
CGGCAGGAACGGCACGAGCGAGACAGAGATCACGAGAGATTCGCCGCAGT
CTTCAGCACCGCCAGCACCACCGTGCCCACGAACACAAGTTCCAGTTCCG
GATTGGCGCCCGAACAGCTCCGCATTCCGACGGGTGCAGCCGCCTTCAGC
GGATTTCCGGGGCTCCACAGCATGAGTAGTCTTATGCTTCCATCGTCGGC
GGCTGTGGCCGCCGCAGCAGCGGCCCCGTTTCTGCCCTGGTCGCCCATCC
TGCTGCCGCCGTGGAACCACGCCCTCCTACCAGCCGCCTTTTATCCGGCG
GCCCTGCGAAACGCTTTGCCTGGCTTATTCGATGCAAAGGTGCCGTCGTC
CCAACGCTCTGGCTTCCATATATCGGACATCTTGAATTTGGAGGGCTCTG
AGCTGAAGAATGCAGCAGCTGCCGCCGCTGCTGCCGCCCACCATGGCAGC
GATTTGAGTCACCACTCGGCCAGTGAGTCCACCAGTGGACATCGCGGCCA
GGGATCTCACACCTCGCCTTCGGCGCTGTCGCCCACGCCAGCGGGCGTTT
CCGCGGACGAGCACCACAATGGCAGCGGGACTGGGGGAGGAGCGGGAGAA
GCGGATCACCACAGCACCACCGAGCATCACGCCCCTCCTAGCCATCCGCA
GCAACAGCACCCGCACCACCAGCAGCACCACCACCCTCACCTCCTCCTCC
CGCAGCAGCACCATCAGCAGGCGGTGGCCCCACTCCCTTTGGCGCACCAT
CAGAGCGGCGAAGCCCAAAGCCACGCCCATGCCAATGCAGCCGCCGCCCA
TCTGCTGGCCAGCCACAATGCAGCGGCTGCGGCTGCTGTGGCCGCCGGCC
AATATCTGCCCAACCTGCCCAAGAACTTCCCGGGGAGCTTTGGCGACGAG
ATGTCCTCGTACCACCACATGGCCCAAACCATGCTGCAGCACTCGGGCAG
GAGTGCGTGGATCAAGGAGAACGAGCTATACGGTACCCAGCAGCCCGCCA
GTCCGGATAGCACCTCCCCAGTTACCTCGGAAGTGTCGTACACCTACATT
GGTTCCAACTGCCAGACATCGCCTGCCCTTTCCGGCGATTACAAGAGCTA
CAGCCGGTCGGCCGATAGCGATGCACTATCCGTGGGCGACGCCCTGCACA
CCCTCCATGGATCCTCTGGTAATGGAAGTGCCGGAGGCGCTCCGACGGCC
CATGCCCTACACAACAACAATAATAATACGACAAACAACAATAACCACAG
CCTGAAGGCCGAGGGGATCAACGGAGCAGGCAGTGGTCACGACGATAGCC
TCAACGAAGATGGCATCGAGGAGGATATCGACGACGTGGACGACGCCGAC
GGCAGTGGCGGCGGGGATGCAAATGGATCCGACGGTCTGCCAAATAAGAA
ACGGAAGCGACGAGTCCTGTTCACCAAGGCGCAAACATATGAGCTGGAAC
GTCGGTTTCGACAACAACGTTACTTGAGTGCCCCGGAACGCGAGCACCTG
GCCAGTTTGATCCGCCTGACGCCGACCCAGGTGAAGATCTGGTTTCAAAA
CCATCGCTACAAGACGAAGCGGGCGCAAAACGAGAAGGGCTACGAGGGTC
ATCCTGGTCTACTGCACGGCCATGCCACCCATCCGCATCACCCCAGTGCC
CTGCCATCGCCCCGTCGGGTAGCCGTTCCAGTTCTGGTGAGGAACGGAAA
GCCCTGCTTGGGCGATAGTTCCAAACTGGGAGCCGACTGCGTCTCCGTGT
CATCAGCCACCGCCACCGCCATGCAGAATGCCGCCGCCCATCACTTGGTT
GCCCTAAATGGAGCGGCCGCCTATCAACATGCCGCTGCAGCGGCTGCCGG
CCTTCACGCCCACGCCCATGCTCATGCCCACGCCCACGGACACGGCCATC
CACACGCCCACGCCCAGAGGGCCGCCTGGTGGCCCGCAAGCTTTCTAGAC
CAT
BO32034.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:20:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vnd-RA | 2172 | CG6172-PA | 1..2169 | 17..2185 | 10845 | 100 | Plus |
| vnd-RB | 1734 | CG6172-PB | 120..1731 | 574..2185 | 8060 | 100 | Plus |
| bap-RA | 1149 | CG7902-PA | 637..695 | 1763..1821 | 205 | 89.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:20:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vnd-RA | 3033 | CG6172-RA | 350..2522 | 13..2185 | 10850 | 100 | Plus |
| vnd-RB | 3412 | CG6172-RB | 958..2569 | 574..2185 | 8060 | 100 | Plus |
| bap-RA | 1449 | CG7902-RA | 772..830 | 1763..1821 | 205 | 89.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:20:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 596355..597308 | 1232..2185 | 4770 | 100 | Plus |
| X | 23542271 | X | 593647..594308 | 573..1234 | 3310 | 100 | Plus |
| X | 23542271 | X | 591391..591951 | 13..573 | 2790 | 99.8 | Plus |
| 3R | 32079331 | 3R | 21389772..21389830 | 1763..1821 | 205 | 89.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 11:20:12 has no hits.
BO32034.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-15 10:36:41 Download gff for
BO32034.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vnd-RA | 354..2522 | 17..2187 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:06 Download gff for
BO32034.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vnd-RA | 354..2522 | 17..2187 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:40:46 Download gff for
BO32034.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vnd-RA | 354..2522 | 17..2187 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:40:46 Download gff for
BO32034.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 591395..591951 | 17..573 | 100 | -> | Plus |
| X | 593648..594306 | 574..1232 | 100 | -> | Plus |
| X | 596356..597308 | 1233..2187 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:06 Download gff for
BO32034.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 485428..485984 | 17..573 | 100 | -> | Plus |
| arm_X | 487681..488339 | 574..1232 | 100 | -> | Plus |
| arm_X | 490389..491341 | 1233..2187 | 99 | | Plus |
BO32034.pep Sequence
Translation from 16 to 2203
> BO32034.pep
MTTSASLERTPSKRDRDRERDNSSGLGSAGSLPASPQSAITVSPSSPATP
KRPLRTSTPSLERKREREDREDREDRKERQERHERDRDHERFAAVFSTAS
TTVPTNTSSSSGLAPEQLRIPTGAAAFSGFPGLHSMSSLMLPSSAAVAAA
AAAPFLPWSPILLPPWNHALLPAAFYPAALRNALPGLFDAKVPSSQRSGF
HISDILNLEGSELKNAAAAAAAAAHHGSDLSHHSASESTSGHRGQGSHTS
PSALSPTPAGVSADEHHNGSGTGGGAGEADHHSTTEHHAPPSHPQQQHPH
HQQHHHPHLLLPQQHHQQAVAPLPLAHHQSGEAQSHAHANAAAAHLLASH
NAAAAAAVAAGQYLPNLPKNFPGSFGDEMSSYHHMAQTMLQHSGRSAWIK
ENELYGTQQPASPDSTSPVTSEVSYTYIGSNCQTSPALSGDYKSYSRSAD
SDALSVGDALHTLHGSSGNGSAGGAPTAHALHNNNNNTTNNNNHSLKAEG
INGAGSGHDDSLNEDGIEEDIDDVDDADGSGGGDANGSDGLPNKKRKRRV
LFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKT
KRAQNEKGYEGHPGLLHGHATHPHHPSALPSPRRVAVPVLVRNGKPCLGD
SSKLGADCVSVSSATATAMQNAAAHHLVALNGAAAYQHAAAAAAGLHAHA
HAHAHAHGHGHPHAHAQRAAWWPASFLDH
BO32034.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:35:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vnd-PA | 723 | CG6172-PA | 1..723 | 1..723 | 3834 | 100 | Plus |
| vnd-PB | 577 | CG6172-PB | 41..577 | 187..723 | 2887 | 100 | Plus |
| scro-PA | 468 | CG17594-PA | 52..383 | 325..680 | 363 | 31.1 | Plus |
| scro-PF | 307 | CG17594-PF | 91..222 | 544..680 | 362 | 55.6 | Plus |
| B-H2-PA | 645 | CG5488-PA | 15..437 | 165..602 | 267 | 26.9 | Plus |
