Clone BO32104 Report

Search the DGRC for BO32104

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:321
Well:4
Vector:pDNR-Dual
Associated Gene/TranscriptmRpL24-RA
Protein status:BO32104.pep: Imported from assembly
Sequenced Size:775

Clone Sequence Records

BO32104.complete Sequence

775 bp assembled on 2012-07-09

GenBank Submission: KX798721

> BO32104.complete
GAAGTTATCAGTCGACATGCGTTTAACGCAATATTTGGCCAGCAAGTTGA
AGAACTTTTCCAATCTGCCCAAGGAATACATCGAGCGCAGCAAAAAACAG
GTGTACTGGCAAACTCCGAAGGAGATTAATTACCTACCGCGTACCGTGGA
GCGAAAGAGATTCCGCTACACCACAAATCGTTCATGGACGGGTCAGTTCC
GCCAGCAAAATATGCCCGGAACCGTGCGTCGCAAGGTGCTAGTGGAACCA
ATTGAGGACTGGAGCTTTTTCCGCGGCGATCGTATCGAAGTCCTTGTGGG
TAAAGACAAAGGAAAGCAGGGAATTGTCACCCAGGTTATACCCGAGCGCA
ATTGGGTAATTGTAGAGGGCCTGAACTGGCACTATCGCAAGGTTGGCGGT
GAGAAGGAGTTTCCCGGTATCATTATCAAGTCCGAGGCACCTTTGCACGT
CACCAAGGACATTCGTCTGGTTGACCCATCGGATCTTCAGGGCACCGACT
TTGAGTGGCGTTTCACGGAGGAGGGCGAGAAAGTGCGGGTGTCCTTGCGA
TCTGGCCGAATCATACCCATCCCGGAGACGAACAACCAGACGCACGATTA
TAAAACACCAAACGCCTATATCGAAAGGGAGAAGGATACGCCAGGCGCTG
TTGTGGGCGAGATCACCTTTCAGCCCAAGTTGTCCACATTCGAGATGGAC
ATTATGGAGGAAATGGGCATCAAAGAGGAACGCACGCCAGTCAAGAGCTA
TTGGTACGCAAGCTTTCTAGACCAT

BO32104.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:39:41
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL24-RA 744 CG8849-PA 1..741 17..757 3705 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:39:42
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL24-RA 875 CG8849-RA 87..827 17..757 3705 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:39:39
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4944474..4944865 645..254 1960 100 Minus
2L 23513712 2L 4944927..4945084 254..97 790 100 Minus
2L 23513712 2L 4944304..4944419 757..642 580 100 Minus
2L 23513712 2L 4945190..4945275 102..17 430 100 Minus
Blast to na_te.dros performed on 2014-11-28 11:39:40 has no hits.

BO32104.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-09 16:49:17 Download gff for BO32104.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL24-RA 69..809 17..759 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:25 Download gff for BO32104.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL24-RA 87..827 17..759 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:48:43 Download gff for BO32104.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL24-RA 87..827 17..759 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:48:43 Download gff for BO32104.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4944302..4944416 645..759 98 <- Minus
2L 4944475..4944864 255..644 100 <- Minus
2L 4944927..4945080 101..254 100 <- Minus
2L 4945192..4945275 17..100 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:25 Download gff for BO32104.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4944302..4944416 645..759 98 <- Minus
arm_2L 4944475..4944864 255..644 100 <- Minus
arm_2L 4944927..4945080 101..254 100 <- Minus
arm_2L 4945192..4945275 17..100 100   Minus

BO32104.pep Sequence

Translation from 16 to 775

> BO32104.pep
MRLTQYLASKLKNFSNLPKEYIERSKKQVYWQTPKEINYLPRTVERKRFR
YTTNRSWTGQFRQQNMPGTVRRKVLVEPIEDWSFFRGDRIEVLVGKDKGK
QGIVTQVIPERNWVIVEGLNWHYRKVGGEKEFPGIIIKSEAPLHVTKDIR
LVDPSDLQGTDFEWRFTEEGEKVRVSLRSGRIIPIPETNNQTHDYKTPNA
YIEREKDTPGAVVGEITFQPKLSTFEMDIMEEMGIKEERTPVKSYWYASF
LDH

BO32104.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:07:15
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL24-PA 247 CG8849-PA 1..247 1..247 1317 100 Plus