BO32136.complete Sequence
3226 bp assembled on 2012-07-27
GenBank Submission: KX796325
> BO32136.complete
GAAGTTATCAGTCGACATGGCCACAACCTGCATGCCGCATTTCACGGAAT
ATTTTCAAACCACCACCCAGTCAGAGTTAACAACAAATGAAAGTGCCAAC
AGCAGAAGCAGCAGCAGCAGCAGTGGCTGTAGAGAACCGTCCAAAACCAG
TGGCTTCTTCTACAGCGCCAGCACACATTACCAGAGCAAAGTGCAGCAGC
TAATCAGCTTCAGCTTCACCTCATCGTTCCACCTGCTCTTCATCACCTGC
ATACTGAGCATCAGCAAATTCTGCAATGCGGCGGCGGTAAATGCCGCCCA
TGTGACCGCTGCCACGCCCACTGCCAGCGAGATAATGCACAATCTGAGCG
GATCGGCGCTGCTAGAGCGTCTGAAAGCCAGTACTCTGGGACCCACCCTC
GATCAGCTGAAGCATCTGGCTCCTGCGGCAGCCAACAGCATTAGTCCTGG
TACAGGATCTGGCATGGGAATCGGGATGGGACACTTTGGCAGTTCCATTA
ATTCGGTGCTAAACGGAAATCCTTTAAAGTTCTTGAATGTGTCAGGAAAA
ATCGGCACTCCTTTGGACATATCTCTCGGTCTGAGCAACTACTGCGATGA
GAAGCAGTTCCAGTGCTCCACCGGCGAATGTATCCCCATACGGTTCGTGT
GCGATGGCTCCTCGGATTGCCCGGACCACAGTGATGAGCGGCTGGAGGAG
TGCAAGTTTACAGAATCAACTTGCAGCCAGGAACAATTCCGCTGCGGCAA
CGGAAAGTGCATTCCGCGAAGATGGGTCTGCGATCGGGAAAACGACTGCG
CCGATGGAAGCGATGAATCGACGTCCCAGTGCCGAAGCCACACATGTTCG
CCCGAGGAGTTTGCCTGCAAGTCGGGCGAGGGCGAGTGCATTCCCTTGTC
CTGGATGTGCGATCAGAACAAAGATTGTCGCGATGGAAGCGATGAGGCGC
AGTGCAATAGGACATGTCGCTCCGACGAGTTCACCTGCGGCAATGGACGT
TGCATTCAGAATCGCTTCAAGTGCGACGATGACGACGATTGTGGTGACGG
ATCGGATGAGAAGAACTGCGGGGAAAAGGCGAAATGCGGATCCAATTTCT
TCGCTTGCAAAAGTGGACCGTGCATTCCCAATCAATGGGTTTGCGATGGA
GATTCAGACTGCAGAAATGGCGAAGATGAAATGCAAAACTGCACCGTCAG
TCTATTGAACTTCTGCCAAGCGGGTGAGTTCCAGTGCTCGGATAGAATCA
CCTGCCTGCACAAATCGTGGGTTTGCGATGGCGAGGCCGATTGTCCCGAT
GGCGAGGACGAATCGCAGTCCAACTGCCTAAAAGTGTCCTGTCGTCCGGA
TCAGTTCCAATGCAACGATCAAAGCTGCATCGCTGGCCATCTGACCTGCA
ACGGGAAGAGGGACTGTGCGGATGGCAGTGATGAAATTATGTGCGACATT
AGTGCGACGCCAAGGACTTGCAATGCAACCACTGAATTCGATTGCGGCGG
TGGTCTGTGCATCCCGAATGCCAAGGTCTGCAACCGCAGGAAGGATTGCC
CGAATGGCGAGGATGAGCCGGCCGGAAAGTGTGGCATCAACGAGTGCTCC
TCGAAGAATGGCGGCTGTATGCACCAGTGTGTGAATCTGGAGGTGGGTTA
CCGCTGCGAGTGCCACGATGGCTATAAACTGGGCGCCGATCAACACACAT
GTGTGGACATCGATGAATGTGAGACTCCTGGCATTTGCTCCCAGGTGTGC
GTCAACGAGATCGGAGCCTTTAAGTGCGAGTGCGAGGCGGGCTACATGAG
ACTCCTGAAGAATCACACCAGGTGTAAGGCCAGCGAAGGACATGCCTCGC
TACTTCTGGCCAGGCGCCATGACATCCGGAAGATAGCACTGGATCGACCG
GAAATGACGTCAATAGTGAATAGTACAAAGGCAGCCACGGCTCTGGACTT
CGTGTTCCGCACGGGAATGATCTTCTGGAGCGATGTTGCAACCCAGAGTA
TTTACAAAGCGCCCATTGATGAGGGTAACGATAGAACGGTGGTGCTGACA
AAGTCCTCGGTGACCTCGGATGGCCTGGCTGTCGATTGGATCTATAACCA
TGTCTACTTTACGGACACCCACAAGTGCACCATCGAACTGACCAACTTCG
AGGGCAGCATGGGCAAGGTCCTGGTAAAGGACTCCCTGGACATTCCTCGT
TCCATTGCTTTGGATCCCATCGAGGGCTGGATGTACTGGTCCGACTGGGG
CGCCTCTCCGCGCATCGAAAGGGCGGGTATGGATGGCACCCACCGCACTG
CCATCATCACCTACGATGTTAAGTGGCCAAATGGCATCACATTGGACCTG
GTTCAAAAACGCCTTTACTGGGTGGATGGCAAGTTGAACACCATCTCGTC
GTCAAACTACGATGGCTCGCAAAGACATCAGGTGCTCTACTCCGGCGAAT
ACCTGCGACATCCCTTCTCGATCACCACCTTCGAGGACTACGTCTACTGG
ACCGACTGGGATAAGCAAGCCGTCTTCAAGGCCAACAAGTTCAATGGAAT
GGATGTGGAGCCTGTTACGGCGACGCATATGTTGGAACATCCCATGGTGG
TGCACGTGTACCATCCTTATCGCCAGCCAGATGGCGTGAATCACTGCCAG
TCGGTGAATGGCCACTGTTCTCATCTTTGCCTGCCAGCTCCCAGGATTAA
CGAGCGGAGTCCTCGCATATCCTGCGCCTGTCCGACAGGCCTGAAATTAA
TGCCCGACGGGCTAATGTGCGTCGAAGATCTGGGTATCCCAACTGTGCGT
CCCACTGCACCGATGCACCGGACAATCGAACAGTCGTCCAACTCAACCAC
AAAACTACCTCAAGATGGGTACAGTGAAACGCCGGTTGAAACAAAAACTG
GAAACAACCGCACAGACACATCTAACCAGGTCCACAAATCTGATGCCGAA
TCAGAAAATGATTACGTCGAAATAGCCTTGCATGTGATTGCCAGTTTAGC
GGGCACAGCTTTAGTAGCAAGCGTCATCTATGTCGTATACCGACGCTGCA
CGCGCGCCGTGAACTCGATGAACTTCGAGAATCCCGTCTACCACAAGACC
ACAGAGGACCACTTCAGTCTGGAGAAGAATGGGACGCCACACATTTACGC
CGCAGCCAATGACGAGGAGGCCGTCAACCCCCTCTTCAAATCTGGCACCG
AATGTGTTGCAAGCTTTCTAGACCAT
BO32136.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:47:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| LpR2-RE | 3195 | CG31092-PE | 1..3192 | 17..3208 | 15960 | 100 | Plus |
| LpR2-RC | 3090 | CG31092-PC | 1..2765 | 17..2781 | 13825 | 100 | Plus |
| LpR2-RH | 2589 | CG31092-PH | 91..2586 | 713..3208 | 12480 | 100 | Plus |
| LpR2-RC | 3090 | CG31092-PC | 2765..3087 | 2886..3208 | 1615 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:47:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| LpR2-RE | 4189 | CG31092-RE | 234..3425 | 17..3208 | 15960 | 100 | Plus |
| LpR2-RC | 4581 | CG31092-RC | 234..2998 | 17..2781 | 13825 | 100 | Plus |
| LpR2-RH | 3397 | CG31092-RH | 378..2873 | 713..3208 | 12480 | 100 | Plus |
| LpR2-RC | 4581 | CG31092-RC | 2998..3320 | 2886..3208 | 1615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:47:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25706816..25708214 | 2581..1183 | 6995 | 100 | Minus |
| 3R | 32079331 | 3R | 25744980..25746092 | 2581..1469 | 3015 | 84.7 | Minus |
| 3R | 32079331 | 3R | 25739055..25739610 | 572..17 | 2780 | 100 | Minus |
| 3R | 32079331 | 3R | 25709291..25709517 | 1183..957 | 1135 | 100 | Minus |
| 3R | 32079331 | 3R | 25706287..25706486 | 2780..2581 | 1000 | 100 | Minus |
| 3R | 32079331 | 3R | 25701308..25701455 | 3170..3023 | 740 | 100 | Minus |
| 3R | 32079331 | 3R | 25722416..25722556 | 713..573 | 705 | 100 | Minus |
| 3R | 32079331 | 3R | 25701523..25701662 | 3024..2885 | 700 | 100 | Minus |
| 3R | 32079331 | 3R | 25744684..25744876 | 2780..2588 | 680 | 90.2 | Minus |
| 3R | 32079331 | 3R | 25713841..25713964 | 834..711 | 620 | 100 | Minus |
| 3R | 32079331 | 3R | 25710025..25710147 | 956..834 | 615 | 100 | Minus |
| 3R | 32079331 | 3R | 25705931..25706035 | 2885..2781 | 525 | 100 | Minus |
| 3R | 32079331 | 3R | 25747127..25747229 | 1063..961 | 260 | 83.5 | Minus |
| 3R | 32079331 | 3R | 25754348..25754465 | 710..593 | 245 | 80.5 | Minus |
| 3R | 32079331 | 3R | 25699988..25700028 | 3208..3168 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 11:47:29 has no hits.
BO32136.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-27 14:03:00 Download gff for
BO32136.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LpR2-RE | 234..3425 | 17..3210 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:32:27 Download gff for
BO32136.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LpR2-RE | 234..3425 | 17..3210 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:51:19 Download gff for
BO32136.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LpR2-RE | 234..3425 | 17..3210 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:51:19 Download gff for
BO32136.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25709291..25709517 | 957..1183 | 100 | <- | Minus |
| 3R | 25710025..25710147 | 834..956 | 100 | <- | Minus |
| 3R | 25713842..25713961 | 714..833 | 100 | <- | Minus |
| 3R | 25722416..25722556 | 573..713 | 100 | <- | Minus |
| 3R | 25699986..25700026 | 3170..3210 | 95 | <- | Minus |
| 3R | 25701309..25701455 | 3023..3169 | 100 | <- | Minus |
| 3R | 25701525..25701661 | 2886..3022 | 100 | <- | Minus |
| 3R | 25705931..25706035 | 2781..2885 | 100 | <- | Minus |
| 3R | 25706287..25706485 | 2582..2780 | 100 | <- | Minus |
| 3R | 25706816..25708213 | 1184..2581 | 100 | <- | Minus |
| 3R | 25739055..25739610 | 17..572 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:32:27 Download gff for
BO32136.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21532009..21532207 | 2582..2780 | 100 | <- | Minus |
| arm_3R | 21527247..21527383 | 2886..3022 | 100 | <- | Minus |
| arm_3R | 21531653..21531757 | 2781..2885 | 100 | <- | Minus |
| arm_3R | 21525708..21525748 | 3170..3210 | 95 | <- | Minus |
| arm_3R | 21527031..21527177 | 3023..3169 | 100 | <- | Minus |
| arm_3R | 21532538..21533935 | 1184..2581 | 100 | <- | Minus |
| arm_3R | 21535013..21535239 | 957..1183 | 100 | <- | Minus |
| arm_3R | 21535747..21535869 | 834..956 | 100 | <- | Minus |
| arm_3R | 21539564..21539683 | 714..833 | 100 | <- | Minus |
| arm_3R | 21548138..21548278 | 573..713 | 100 | <- | Minus |
| arm_3R | 21564777..21565332 | 17..572 | 100 | | Minus |
BO32136.pep Sequence
Translation from 16 to 3226
> BO32136.pep
MATTCMPHFTEYFQTTTQSELTTNESANSRSSSSSSGCREPSKTSGFFYS
ASTHYQSKVQQLISFSFTSSFHLLFITCILSISKFCNAAAVNAAHVTAAT
PTASEIMHNLSGSALLERLKASTLGPTLDQLKHLAPAAANSISPGTGSGM
GIGMGHFGSSINSVLNGNPLKFLNVSGKIGTPLDISLGLSNYCDEKQFQC
STGECIPIRFVCDGSSDCPDHSDERLEECKFTESTCSQEQFRCGNGKCIP
RRWVCDRENDCADGSDESTSQCRSHTCSPEEFACKSGEGECIPLSWMCDQ
NKDCRDGSDEAQCNRTCRSDEFTCGNGRCIQNRFKCDDDDDCGDGSDEKN
CGEKAKCGSNFFACKSGPCIPNQWVCDGDSDCRNGEDEMQNCTVSLLNFC
QAGEFQCSDRITCLHKSWVCDGEADCPDGEDESQSNCLKVSCRPDQFQCN
DQSCIAGHLTCNGKRDCADGSDEIMCDISATPRTCNATTEFDCGGGLCIP
NAKVCNRRKDCPNGEDEPAGKCGINECSSKNGGCMHQCVNLEVGYRCECH
DGYKLGADQHTCVDIDECETPGICSQVCVNEIGAFKCECEAGYMRLLKNH
TRCKASEGHASLLLARRHDIRKIALDRPEMTSIVNSTKAATALDFVFRTG
MIFWSDVATQSIYKAPIDEGNDRTVVLTKSSVTSDGLAVDWIYNHVYFTD
THKCTIELTNFEGSMGKVLVKDSLDIPRSIALDPIEGWMYWSDWGASPRI
ERAGMDGTHRTAIITYDVKWPNGITLDLVQKRLYWVDGKLNTISSSNYDG
SQRHQVLYSGEYLRHPFSITTFEDYVYWTDWDKQAVFKANKFNGMDVEPV
TATHMLEHPMVVHVYHPYRQPDGVNHCQSVNGHCSHLCLPAPRINERSPR
ISCACPTGLKLMPDGLMCVEDLGIPTVRPTAPMHRTIEQSSNSTTKLPQD
GYSETPVETKTGNNRTDTSNQVHKSDAESENDYVEIALHVIASLAGTALV
ASVIYVVYRRCTRAVNSMNFENPVYHKTTEDHFSLEKNGTPHIYAAANDE
EAVNPLFKSGTECVASFLDH
BO32136.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:10:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| LpR2-PE | 1064 | CG31092-PE | 1..1064 | 1..1064 | 5858 | 100 | Plus |
| LpR2-PG | 1063 | CG31092-PG | 1..1063 | 1..1064 | 5711 | 98.1 | Plus |
| LpR2-PC | 1029 | CG31092-PC | 1..1029 | 1..1064 | 5628 | 96.7 | Plus |
| LpR2-PA | 1028 | CG31092-PA | 1..1028 | 1..1064 | 5481 | 94.8 | Plus |
| LpR2-PH | 862 | CG31092-PH | 31..862 | 233..1064 | 4649 | 100 | Plus |
