Clone BO32528 Report

Search the DGRC for BO32528

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:325
Well:28
Vector:pDNR-Dual
Associated Gene/TranscriptRab1-RA
Protein status:BO32528.pep: Imported from assembly
Sequenced Size:649

Clone Sequence Records

BO32528.complete Sequence

649 bp assembled on 2012-07-12

GenBank Submission: KX797088

> BO32528.complete
GAAGTTATCAGTCGACATGTCATCTGTGAATCCGGAATACGATTATCTCT
TTAAGTTGCTGCTTATTGGAGACTCGGGCGTTGGAAAGTCCTGTCTTCTG
TTGCGATTTGCCGATGACACATATACAGAAAGTTATATCAGCACAATCGG
AGTGGATTTCAAAATCAGGACTATAGAACTCGACGGAAAGACCATTAAAC
TGCAAATCTGGGATACTGCTGGCCAGGAGCGCTTCCGCACCATCACGTCT
TCATATTATAGGGGCGCCCATGGCATCATTGTCGTATACGATTGCACGGA
CCAGGAGTCTTTCAACAATGTGAAGCAGTGGCTGGAGGAGATCGAGCGGT
ATGCCTGTGAGAATGTCAACAAGTTGCTGGTTGGCAACAAGAGCGACTTG
ACCACCAAGAAAGTAGTCGACCACACCACAGCTGCGGAGTACGCCGCCCA
GTTAGGCATTCCATTCCTTGAAACTTCGGCCAAGAGCGCCACCAACGTTG
AGCAGGCCTTCATGACGATGGCGGCGGAGATCAAGAATCGCGTCGGGCCG
CCGTCCAGCGCCACTGACAACGCTAGCAAAGTGAAAATCGATCAAGGACG
TCCAGTGGAAAACACCAAATCCGGTTGCTGCGCAAGCTTTCTAGACCAT

BO32528.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:43:25
Subject Length Description Subject Range Query Range Score Percent Strand
Rab1-RA 618 CG3320-PA 1..615 17..631 3075 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:43:27
Subject Length Description Subject Range Query Range Score Percent Strand
Rab1-RA 1804 CG3320-RA 268..882 17..631 3075 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:43:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21267225..21267453 437..209 1145 100 Minus
3R 32079331 3R 21266951..21267146 631..436 980 100 Minus
3R 32079331 3R 21267620..21267740 160..40 605 100 Minus
3R 32079331 3R 21267510..21267557 208..161 240 100 Minus
Blast to na_te.dros performed on 2014-11-28 11:43:24 has no hits.

BO32528.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-12 11:18:08 Download gff for BO32528.complete
Subject Subject Range Query Range Percent Splice Strand
Rab1-RA 317..931 17..633 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:30:48 Download gff for BO32528.complete
Subject Subject Range Query Range Percent Splice Strand
Rab1-RA 268..882 17..633 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:50:04 Download gff for BO32528.complete
Subject Subject Range Query Range Percent Splice Strand
Rab1-RA 268..882 17..633 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:50:04 Download gff for BO32528.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21267226..21267453 209..436 100 <- Minus
3R 21267510..21267557 161..208 100 <- Minus
3R 21267620..21267740 40..160 100 <- Minus
3R 21268771..21268793 17..39 100   Minus
3R 21266948..21267145 437..633 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:30:48 Download gff for BO32528.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17092948..17093175 209..436 100 <- Minus
arm_3R 17093232..17093279 161..208 100 <- Minus
arm_3R 17093342..17093462 40..160 100 <- Minus
arm_3R 17094493..17094515 17..39 100   Minus
arm_3R 17092670..17092867 437..633 98 <- Minus

BO32528.pep Sequence

Translation from 16 to 649

> BO32528.pep
MSSVNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKI
RTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQESFN
NVKQWLEEIERYACENVNKLLVGNKSDLTTKKVVDHTTAAEYAAQLGIPF
LETSAKSATNVEQAFMTMAAEIKNRVGPPSSATDNASKVKIDQGRPVENT
KSGCCASFLDH

BO32528.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:09:00
Subject Length Description Subject Range Query Range Score Percent Strand
Rab1-PA 205 CG3320-PA 1..205 1..205 1060 100 Plus
Rab8-PC 207 CG8287-PC 5..170 8..173 561 62 Plus
Rab8-PA 207 CG8287-PA 5..170 8..173 561 62 Plus
Rab10-PA 204 CG17060-PA 6..204 8..206 555 55.7 Plus
Rab35-PB 201 CG9575-PB 5..183 8..184 531 58.3 Plus