BO32528.complete Sequence
649 bp assembled on 2012-07-12
GenBank Submission: KX797088
> BO32528.complete
GAAGTTATCAGTCGACATGTCATCTGTGAATCCGGAATACGATTATCTCT
TTAAGTTGCTGCTTATTGGAGACTCGGGCGTTGGAAAGTCCTGTCTTCTG
TTGCGATTTGCCGATGACACATATACAGAAAGTTATATCAGCACAATCGG
AGTGGATTTCAAAATCAGGACTATAGAACTCGACGGAAAGACCATTAAAC
TGCAAATCTGGGATACTGCTGGCCAGGAGCGCTTCCGCACCATCACGTCT
TCATATTATAGGGGCGCCCATGGCATCATTGTCGTATACGATTGCACGGA
CCAGGAGTCTTTCAACAATGTGAAGCAGTGGCTGGAGGAGATCGAGCGGT
ATGCCTGTGAGAATGTCAACAAGTTGCTGGTTGGCAACAAGAGCGACTTG
ACCACCAAGAAAGTAGTCGACCACACCACAGCTGCGGAGTACGCCGCCCA
GTTAGGCATTCCATTCCTTGAAACTTCGGCCAAGAGCGCCACCAACGTTG
AGCAGGCCTTCATGACGATGGCGGCGGAGATCAAGAATCGCGTCGGGCCG
CCGTCCAGCGCCACTGACAACGCTAGCAAAGTGAAAATCGATCAAGGACG
TCCAGTGGAAAACACCAAATCCGGTTGCTGCGCAAGCTTTCTAGACCAT
BO32528.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:43:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab1-RA | 618 | CG3320-PA | 1..615 | 17..631 | 3075 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:43:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab1-RA | 1804 | CG3320-RA | 268..882 | 17..631 | 3075 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:43:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21267225..21267453 | 437..209 | 1145 | 100 | Minus |
3R | 32079331 | 3R | 21266951..21267146 | 631..436 | 980 | 100 | Minus |
3R | 32079331 | 3R | 21267620..21267740 | 160..40 | 605 | 100 | Minus |
3R | 32079331 | 3R | 21267510..21267557 | 208..161 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 11:43:24 has no hits.
BO32528.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-12 11:18:08 Download gff for
BO32528.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab1-RA | 317..931 | 17..633 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:30:48 Download gff for
BO32528.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab1-RA | 268..882 | 17..633 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:50:04 Download gff for
BO32528.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab1-RA | 268..882 | 17..633 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:50:04 Download gff for
BO32528.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21267226..21267453 | 209..436 | 100 | <- | Minus |
3R | 21267510..21267557 | 161..208 | 100 | <- | Minus |
3R | 21267620..21267740 | 40..160 | 100 | <- | Minus |
3R | 21268771..21268793 | 17..39 | 100 | | Minus |
3R | 21266948..21267145 | 437..633 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:30:48 Download gff for
BO32528.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17092948..17093175 | 209..436 | 100 | <- | Minus |
arm_3R | 17093232..17093279 | 161..208 | 100 | <- | Minus |
arm_3R | 17093342..17093462 | 40..160 | 100 | <- | Minus |
arm_3R | 17094493..17094515 | 17..39 | 100 | | Minus |
arm_3R | 17092670..17092867 | 437..633 | 98 | <- | Minus |
BO32528.pep Sequence
Translation from 16 to 649
> BO32528.pep
MSSVNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKI
RTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQESFN
NVKQWLEEIERYACENVNKLLVGNKSDLTTKKVVDHTTAAEYAAQLGIPF
LETSAKSATNVEQAFMTMAAEIKNRVGPPSSATDNASKVKIDQGRPVENT
KSGCCASFLDH
BO32528.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:09:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab1-PA | 205 | CG3320-PA | 1..205 | 1..205 | 1060 | 100 | Plus |
Rab8-PC | 207 | CG8287-PC | 5..170 | 8..173 | 561 | 62 | Plus |
Rab8-PA | 207 | CG8287-PA | 5..170 | 8..173 | 561 | 62 | Plus |
Rab10-PA | 204 | CG17060-PA | 6..204 | 8..206 | 555 | 55.7 | Plus |
Rab35-PB | 201 | CG9575-PB | 5..183 | 8..184 | 531 | 58.3 | Plus |