BO32534.complete Sequence
4051 bp assembled on 2012-07-27
GenBank Submission: KX793880
> BO32534.complete
GAAGTTATCAGTCGACATGAGTGTTCGCCCCAATAACGCTGGCGATATGC
TGCTCCACAATTCCGTAATTGGGGGCTACGATGAGTCAAAGTTTGCCGAA
AAGATAACCCACCTGACGCCCACCGAACAGGAAGCAGTGAAACGCTTCTG
GAGGTCGCTGGTTTTGCGAAGTCAACGCGCCTTCATTGAGGAAAATGCTC
GTCCAATCGCGTCCTCCGCGAATCCCGCTCCTGCGGGCATCACTCGCTCG
GTGCGCAGCTGCAACTGCTGTCCCTATGGCTACCACATCGACCTGGACTT
TGTGCGCTACTGCGAGGCCCTCGCCCTTGAGAAGCCCAGCGAGGAGGAGC
AGCGGCGGCGGGATCGCAGAAGATCCCGAAAGTCCATGGAGTTTATGCTG
GGATTTGAGAGCCTCTTCGGCGGCGACTGGCAGGCGGAGTCCAGGGTGCA
GGGAAAGCTCAGCGAGACCTCACACGAAAGCGAACCAGATTCGCCACACC
CCATTGGCGGAGGAGGGTCGTTGCATATGTCGCAGTCGTACACCACCACT
CCGTGCTACCGACCGCGTTCGTCATCCGTGCCGCGTTTCACCTACGGCAG
TATACCGCCTCGATCGGAGTCGCCCTTCGGCACCGCTTCCTCCACGTGCT
CCTCGCTACGCGGCGGCGTGGAGAGCGATGCTGGTATCTACCATCAGCGT
CATCGGCCGGCGATCAGTCCGCCGGAGACGAGGGCCTTCCTCCACGAGGC
GCTCGACGAGGTGTGCAGCGATTTCGAGCGGACGCTGGAGCGGACTTCCG
TAAAGCGACGCAAGTCTCCCTATGGAGCTGGATCCCTGTCCATGGATCGG
AATAACAACAAACTTAGCCTGAGCATCAGCAATGGCCATGGCGCATTGAA
GGAGCTCAAGAGTCATCGCCTGGGCAACAGCACGTGGGATCGGCACTTTG
ATGTGGCAGATTCCTGCATTGGCGGCAATCAATCGCCCACGGGCACGCCG
CGCCCCTTTCTGCGATCCAACACCCTTCCTCTGCGACAGCGACCCAGTCC
GGCGGAGGTCCAATATGAAAGCTACGTGCAGGCCACGGTGGCGGCCAATG
CCAAGTCGCCGGTGGAGCAGCTGGAGAGCGCAAAGTCTCCAGGTGCTCCG
CCACCACCGCCTCCGAGGCGCCACCACCTGTTGGCCACCACGCCCACGGG
AAAACCCACTTTCAAGGAGGATCGACCGCAGGAGAATGGTTCCGTAAGCA
GCAGCTCCCTGCAGTCGCCAGTCATCTCGGAAACCGGTCAGACTACGGCA
GATGCACAAGCTCTGTTCCAGATACGAGAACAAATGGCCCTGAGCCTGAG
GCGTCTTAAGGATCTGGAGGAGCAGGTGAAAGTCATACCCGACATGGAGC
TGGAACTTAATTCTCTTCGCTCGGAAAAGCAGAAATTGCTGCGCAGAAAC
GAGGAGTTGATGCGAAGTCAGCGGCAGACGCCTTCGCCGCCAAGTCCGGG
ACTCAAGACTGCCTCACCCGTGCAGTTCACTCCGCAAAGGATCAGTCCAG
TGTCGCTGGAGAGCCTAGGAGCACGCATGCGCAGCAGTTCCACCTCGGCA
TCTCCATCTCCAAGCGTTGTCCGTCGAGATGTCTCCACTCAAGCAGTGGT
GCGACCACCTGCCACACGAGATGTGTCCGTTGGCCACCAGCCCACCACGA
GAAATGTTGGAGTTCAGCCGTCGGAAACTGTCTACTCCAAGGAGGAGCTG
GATAAGAAGGTGGAGCAGGCACTAACCAATGCACAAAAGCAACAATTGAG
AAAGCTCATCTCTGTGGGCACCCAAATGTATGTGCCCCAGAGGGACCAAA
AAGATAGTGGAGTGCAAACCACACCGGAACGACCCAAACTCAAGTACCAT
GTGGGAGTCACCGTGAAACCGGCCACAAGGGAGAACTTTACCAGTTGCAA
GCCGGATGTGCGTCATGTGGGCAGCTCTGATGATCGCCTGGATGATGTGC
TATGCGAAAAATGCGCCGTCAGCAAGAGAAGCGTGGCCTGCGGTCCGGAA
ACTCCGGCGGAGAAGGTAAAACCTGCTCCCCAAATGCCCGGACGCAGCAA
CACCTTCAGTTTGGGCGAGAATGAGACCGTATCCGTGGTGCGTAAGACAA
TTGGATGCCAGACGCCAGTTACCCTGGTTCTCAGTTCTGGAAGTCAAACC
ACCACGGCTGTTGTTCGTTCCACCGGAGCCCAGGTTAATCCACAGCAACA
GCACTCTGGCGTCCAGTGTGCAACGGAGCAGGTATCCCGACAGACTGATA
CCAAGGGACTGCAGCGACTCACTCGGAGTCAGACGAAGGCTGAACAGGTC
TCAGAGTCTGTGCCCCGCCCTACAACCCGTCACACAGCCAGCAATACGGA
CAAGGTGGAGGAAGCGGAGCCGGCTAAGGTTCGCACAAGCCACTCCGCCT
GCAACACGGAGGAGGTTCGCAAGAGGGATGTGGGCTGTGGCGACATCGTC
AAGCCACACATCTCCATTGCCTGTGCAGCCAACTACTGTGATTCCTGCAA
GGAGGCCATCCAGGATCTGGCCAGGGGTTTCTCGAAGGCCAGTCCCACGG
CCACCAGAACGGGAGGAGCAGTGCGACGCTCCACGTCGGCGGACTCGAGA
ATTCCGCGACCCAAGCACCTCTCCAGTCCGAGTCCGGTGCGCAAAGAGTT
CATGCGGCAGAACACCTACACGCTGGCCACGCCTTCGCCAACTCCAAGTC
CACAGGTGGAAAGGAAGGCGCGATTGAGCTCCCTGCAAGAGAAGCCACCG
TCAGTGTCCAGTTTCCAGGCATCGGAGCCATTGCCCGAATCCCAAAGCTT
CATCCGTCAACCGCAGAAGGATTCATTGGATCTGAGTCTCTTGGGCGAGG
ATGAGTTGATAGTCCGAGAGGAGAAGCGGGTGAGCATCAGCTGGTCGCGC
GATGCCTCACCAGCTCCGCTGATGACCTCCTCGGGCACTACCAAGTCCGA
ATCACCGGAACAGGAGCCGGCAATGAGCTCCTCAAGTGATTCAAGTCCGC
CCATCGACGTCCAGATTGCCCAGGGAGCGCGCAAGAAGTCCAGCACTCCA
CTCAAATCTAGTCAGAGCGAGGGCTCCCAAGTGACCGTGATCGAACAGCC
GGCCACCAAAGCCCAGCTCCACCAGTTGGCCCAGGCGGATTCGGAGCCCC
GAAAAAAAACCGAGTTGTCCCAGAGCCTTAAAGACGCCCTCAAGATCATT
AACGACTCGCTGCTGAAGAAGCTGGGCGCCAAACCCATATCCTCGCAGAG
TCTCAAGTCGGCCAAGGCGACCATTCAGGATCATTGGTTCACTAACTCCA
GTACTGGCAAATCCGATCCCCATCAGGTTGAGGATTATCTAGATTACTTT
GAATCGCTGTCCATCCCATTGCTGGAGTACTGTGTCAACCTGTCCGACAG
TAATGGCAACACAGCCATGCACTATGCAGTCTCGCACGGCAACTTCGATG
TGGTATCCATACTGCTGGATTCTAAGGTTTGCGATGTAAACCAAATGAAT
AACGCCGGATACACATCGGTGATGCTCGTATCGTTGGCCAAGCTGAAGCA
GCCCGCCCATCGGACAGTCGTCGAGCGACTGTTCAAGATGGCCGATGTCA
ACATACGGGCCAAGAAGCACTGCCAGACCGCTTTGATGCTCGCTGTGTCG
CATGGTAACGGGGACATGGTCAATATGCTTCTGGACGCCGGGGCGGATAT
TAATATCCAGGACGAGGACGGCAGTACGGCTCTGATGTGCGCCGCCGAGC
ACGGACGCGTGGATGTGATCAAGCATCTACTGTCGCATCCCGAGTGCGAT
TCACTGGTCACCGATGTGGATGGCAGCACAGCCTTCAAGATCGCCTGGCA
GGCTGGCCACCGGGATGTGGGACTGCTCATCTATGTCCACGAGCAGATGC
TGCGAAGCAAGCTGCCAAATCGCGGAGATGCAACAAGAAGCTCCCTGATT
TCGCCACCGCGCCACAAGCGCCAGCCATCGCAGGCAAGCTTTCTAGACCA
T
BO32534.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:48:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10249-RD | 4020 | CG10249-PD | 1..4017 | 17..4033 | 20070 | 100 | Plus |
| CG10249-RG | 3885 | CG10249-PG | 3..3882 | 154..4033 | 19400 | 100 | Plus |
| CG10249-RC | 3906 | CG10249-PC | 68..3903 | 198..4033 | 19180 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:48:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10249-RD | 4880 | CG10249-RD | 362..4379 | 16..4033 | 20075 | 100 | Plus |
| CG10249-RG | 5340 | CG10249-RG | 960..4839 | 154..4033 | 19400 | 100 | Plus |
| CG10249-RC | 4551 | CG10249-RC | 215..4050 | 198..4033 | 19180 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:48:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14904073..14905453 | 2778..1398 | 6905 | 100 | Minus |
| 2R | 25286936 | 2R | 14910224..14910718 | 959..465 | 2475 | 100 | Minus |
| 2R | 25286936 | 2R | 14905514..14905955 | 1399..958 | 2210 | 100 | Minus |
| 2R | 25286936 | 2R | 14903136..14903566 | 3207..2777 | 2155 | 100 | Minus |
| 2R | 25286936 | 2R | 14911104..14911373 | 466..197 | 1350 | 100 | Minus |
| 2R | 25286936 | 2R | 14902784..14903031 | 3455..3208 | 1240 | 100 | Minus |
| 2R | 25286936 | 2R | 14902511..14902723 | 3667..3455 | 1065 | 100 | Minus |
| 2R | 25286936 | 2R | 14902202..14902405 | 3869..3666 | 1020 | 100 | Minus |
| 2R | 25286936 | 2R | 14901976..14902141 | 4033..3868 | 830 | 100 | Minus |
| 2R | 25286936 | 2R | 14916872..14917011 | 155..16 | 685 | 99.3 | Minus |
| 2R | 25286936 | 2R | 14914848..14914893 | 197..152 | 230 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 11:48:01 has no hits.
BO32534.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-27 15:28:14 Download gff for
BO32534.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10249-RD | 359..4375 | 17..4035 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:32:40 Download gff for
BO32534.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10249-RD | 363..4379 | 17..4035 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:51:30 Download gff for
BO32534.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10249-RD | 363..4379 | 17..4035 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:51:30 Download gff for
BO32534.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14901974..14902140 | 3869..4035 | 98 | <- | Minus |
| 2R | 14902203..14902403 | 3668..3868 | 100 | <- | Minus |
| 2R | 14902511..14902723 | 3455..3667 | 100 | <- | Minus |
| 2R | 14902785..14903031 | 3208..3454 | 100 | <- | Minus |
| 2R | 14903136..14903564 | 2779..3207 | 100 | <- | Minus |
| 2R | 14904073..14905451 | 1400..2778 | 100 | <- | Minus |
| 2R | 14905514..14905953 | 960..1399 | 100 | <- | Minus |
| 2R | 14910224..14910716 | 467..959 | 100 | <- | Minus |
| 2R | 14911104..14911372 | 198..466 | 100 | <- | Minus |
| 2R | 14914848..14914891 | 154..197 | 100 | <- | Minus |
| 2R | 14916874..14917010 | 17..153 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:32:40 Download gff for
BO32534.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10804379..10804515 | 17..153 | 99 | | Minus |
| arm_2R | 10790016..10790228 | 3455..3667 | 100 | <- | Minus |
| arm_2R | 10789479..10789645 | 3869..4035 | 98 | <- | Minus |
| arm_2R | 10789708..10789908 | 3668..3868 | 100 | <- | Minus |
| arm_2R | 10790290..10790536 | 3208..3454 | 100 | <- | Minus |
| arm_2R | 10790641..10791069 | 2779..3207 | 100 | <- | Minus |
| arm_2R | 10791578..10792956 | 1400..2778 | 100 | <- | Minus |
| arm_2R | 10793019..10793458 | 960..1399 | 100 | <- | Minus |
| arm_2R | 10797729..10798221 | 467..959 | 100 | <- | Minus |
| arm_2R | 10798609..10798877 | 198..466 | 100 | <- | Minus |
| arm_2R | 10802353..10802396 | 154..197 | 100 | <- | Minus |
BO32534.pep Sequence
Translation from 16 to 4051
> BO32534.pep
MSVRPNNAGDMLLHNSVIGGYDESKFAEKITHLTPTEQEAVKRFWRSLVL
RSQRAFIEENARPIASSANPAPAGITRSVRSCNCCPYGYHIDLDFVRYCE
ALALEKPSEEEQRRRDRRRSRKSMEFMLGFESLFGGDWQAESRVQGKLSE
TSHESEPDSPHPIGGGGSLHMSQSYTTTPCYRPRSSSVPRFTYGSIPPRS
ESPFGTASSTCSSLRGGVESDAGIYHQRHRPAISPPETRAFLHEALDEVC
SDFERTLERTSVKRRKSPYGAGSLSMDRNNNKLSLSISNGHGALKELKSH
RLGNSTWDRHFDVADSCIGGNQSPTGTPRPFLRSNTLPLRQRPSPAEVQY
ESYVQATVAANAKSPVEQLESAKSPGAPPPPPPRRHHLLATTPTGKPTFK
EDRPQENGSVSSSSLQSPVISETGQTTADAQALFQIREQMALSLRRLKDL
EEQVKVIPDMELELNSLRSEKQKLLRRNEELMRSQRQTPSPPSPGLKTAS
PVQFTPQRISPVSLESLGARMRSSSTSASPSPSVVRRDVSTQAVVRPPAT
RDVSVGHQPTTRNVGVQPSETVYSKEELDKKVEQALTNAQKQQLRKLISV
GTQMYVPQRDQKDSGVQTTPERPKLKYHVGVTVKPATRENFTSCKPDVRH
VGSSDDRLDDVLCEKCAVSKRSVACGPETPAEKVKPAPQMPGRSNTFSLG
ENETVSVVRKTIGCQTPVTLVLSSGSQTTTAVVRSTGAQVNPQQQHSGVQ
CATEQVSRQTDTKGLQRLTRSQTKAEQVSESVPRPTTRHTASNTDKVEEA
EPAKVRTSHSACNTEEVRKRDVGCGDIVKPHISIACAANYCDSCKEAIQD
LARGFSKASPTATRTGGAVRRSTSADSRIPRPKHLSSPSPVRKEFMRQNT
YTLATPSPTPSPQVERKARLSSLQEKPPSVSSFQASEPLPESQSFIRQPQ
KDSLDLSLLGEDELIVREEKRVSISWSRDASPAPLMTSSGTTKSESPEQE
PAMSSSSDSSPPIDVQIAQGARKKSSTPLKSSQSEGSQVTVIEQPATKAQ
LHQLAQADSEPRKKTELSQSLKDALKIINDSLLKKLGAKPISSQSLKSAK
ATIQDHWFTNSSTGKSDPHQVEDYLDYFESLSIPLLEYCVNLSDSNGNTA
MHYAVSHGNFDVVSILLDSKVCDVNQMNNAGYTSVMLVSLAKLKQPAHRT
VVERLFKMADVNIRAKKHCQTALMLAVSHGNGDMVNMLLDAGADINIQDE
DGSTALMCAAEHGRVDVIKHLLSHPECDSLVTDVDGSTAFKIAWQAGHRD
VGLLIYVHEQMLRSKLPNRGDATRSSLISPPRHKRQPSQASFLDH
BO32534.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:11:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10249-PD | 1339 | CG10249-PD | 1..1339 | 1..1339 | 6878 | 100 | Plus |
| CG10249-PG | 1294 | CG10249-PG | 2..1294 | 47..1339 | 6634 | 100 | Plus |
| CG10249-PC | 1301 | CG10249-PC | 6..1301 | 44..1339 | 6582 | 98.9 | Plus |
| CG10249-PA | 1224 | CG10249-PA | 33..1224 | 148..1339 | 6098 | 99.8 | Plus |
| CG10249-PB | 1042 | CG10249-PB | 17..1042 | 314..1339 | 5213 | 99.8 | Plus |
