BO32535.complete Sequence
3688 bp assembled on 2012-07-27
GenBank Submission: KX798808
> BO32535.complete
GAAGTTATCAGTCGACATGGCGGACATAGTGTACCCCACCGGATGCCGGC
CGCTGGTCGAGGATTTGGGCACAGACGAGCTGATAAGGCGCCTCAAGACC
CTCGCCAATGTTCTGCAGACCATGGACCAGGACGACAATCTCTACCAGCA
ATACATACCATTGGCCCTCCATCTGCTGGACGACTTCTTTATGCAACATC
CATCCCGTGATGTCCAGCTCTTAATCGCGTGCTGCGTGGCGGATGTCCTG
CGGGTTTATGCGCCAGAGGCTCCCTACAAAGAGCAAGATCAAATCAAAAC
TATATTTAAGTTTTTTATCAAGCAACTGCACGGTCTGAAGGATCCGCGCG
ATCCCTCTTTCAAGCGTTACTTCTATCTGCTGGAGAACCTTGCTTTTGTC
AAGTCTTTTAATATGTGTTTCGAACTGGAGGACTGCCAAGAAATCTTCCA
AGACCTGTTTAGTACCATCTTCAAGATTGTCAATGACCAGCACAGTGTCA
AGGTGACTAACTTTTTTCTAGATGTGCTAAGCCCGTTGATCACAGAAGCC
GACAATCTGTCGGTGGAATTGTTGGATCTCATTCTGATTAACATCGTAGA
GCCGTACAAATCTAACAACAAGTTTGCCTGCCAATTAACAGAACAACTTC
TCACTAAAACGGGCGATGCTCTCGAGTCCACCATCAAAATGTTCTTTAAC
CGTGCTCTGGTCATGGATAAGCCAAACACAAAACTGTCCATTACAAACAA
AATCTATGATATCATTTACGAGCTTAACCGCATCAATGCAGGCTTGTTGT
GTTCAGTGCTACCTCAGCTGGAGAACAAACTGCTGTCCACGGACGATGCT
GAGAGGCTAAAGGCAACCACTCTCTTGTCTCGTATGTTCTCCGAAAAGGA
CTCGCAACTAGCGAAAAAGTACCCCAACCTGTTGAAAATCTTCTTTGGGC
GCTTCTGCGACATCACCGAACCAGTTCGCATCAAGTGTGTTCAGTCATCC
ATGCACTTCCTGCTCAATCACCCAAGTCTTCAGCACGATATCACCGAGAA
ATTGCGGCTTCGAAATCACGATCTTGACGAAGTGGTCCGCCACGAGGTGG
TAATGGCTATTGTGGAAACTGCCAAGCGCGACTTCACCCTCGTTCTCGAA
GCGCCCGATCTACTAGAAATTGTGCGCGAGCGGACGCTAGATAAGAAGTA
CAAAATTCGCAGGGATGCGATGAATGGTCTGGCCTACATCTACAAGCGCG
CAATTTGCGAACCCAACGATCTAAGCACTGGCCTTAAGGTCAGGGTTGAC
TGGATTAAGAACAAGATACTACATGGATACTACAAAGTGGGCTTGGAGGA
CCGCCTGCTTGTGGAACGCCTACTTATCACCTGCCTGGTTCCCTATAAAC
TAGCTCCGGAAGAGCGCATGAAGAAGCTATATCATTTGCTAGGCGATCTC
GATGCCAATGCCACCAAGGCTTTCGTCGAGCTGCAGAAGAACCAAATGAA
GACACGCAATACGGTCAGTGATTGGATCAAGCTACACCACTCTAAGGAGT
TCACGCCGCGCGTACTTAGTCAGCTCAGCGCCAAGCAGGCCAACATTGCC
AAACTGCTTCCAGATCCCCTAAAAGCGGCAGAGTACCTAACCCAGTTTAG
CAACAACCTGCGAAAAGATGCTCAGCTCCTACGATGCATTAACATTGTCC
TTAAACGCGACGTAAGCTGTCGGGAGTGTGCTGACACGATGGGAGTTCTC
CTGAAAAAGCTTGGCGCCCACGTCCAATCGAATCTGTATTACAACACAGT
TAAGATGCTGATTGAGCGCGTGGCATCAGTGATGGTGGACAAGGAGTCTA
TTGGCGTACTTATTAGCCTAATTGAACAATGCATCGAGAAAGGGTCCATG
TGTGAAGAGATCGGAATTTCGGCTCAGGAAGCGGGCGAGCGCGGACTCAA
GTTGTTGGCCATGCTTTCATACGTCTTTTCGGCTCATTTCTTCACCGATA
CTTCGCTGCGTCATTTAATTTCCCTGCTCAGTTACGAGCAGGATTATGTT
GCACCACTGGTGCTAAAGACACTAACTCATCTGGGGCGCTATCAGCCACT
CATTGACGACCCTACACCGGCTATTCTCGACGAGCTGGCTCCGGTGTGCA
AGGACTTCGCACTTATTGGAACCCCCAAGCAAGCAAAGCACGCGGTGCGA
TGTATTTTCGTAAACAGCCAGTCGTCGGCTTCCACTGATGGAGCAACAAG
TGGAGCTGGAAGTGCGTCCACAACTACACAAACAGTGCATCCTATTTTCA
ACGAGATCATCGAGACGCTTCGCCTAAAACTGACACCAAACTGTGAGCAT
CAGCGCACAAAGATTGTGACCTTGGGTCACATTGCCTACAATATGCCACA
GGCCTTCCTAACGCCCATTAAGAATATGATTGCGCGACGAATTGTCAAAG
AGCTGCTTATCCAAGAAGTTCCTGCGCAGCGAGACTACGAACTGCCAGAG
GACAGTGATTGGTGTGCCCAAGAGAAACTACCGCCGGACACTCTATGTAA
GCTGGATGCGCTCAAGGCTATGGCCAGGTGGCTTTTGGGATTGCGTACCG
ATGAGCACGCTGCCCAGAAAACATTCCGAATGCTGGCGGCGTTTGTTAAC
CAACGAGGCGATTTGCTCGGCCAGAACCGTCTTTGCGGTGCCGAGAAATC
TTGGCTGCGCCTCGGGGCAGCCTGCGCCATGCTCAAAGTGTGCGAACAAA
AGGGCGTAGGTGATCAGTACAGCGCTGAGCAGTATTTGCAGCTTTCCCAG
CTGATGGCTGATCCGGTGCCAGAAGTTCGGGAAATCTTTGCTCGCAAGCT
GCACAAAGGATTAAGCAGAAGTTTGCCCAGGAACTGTTTGCCGCTGGACT
TCATGGGCTTGTATGTGCTGGCTGGTCTAGAGACTGAGAGGAAATTGCAA
GACCTTGTGCGTCACTATGCAGAAACGGATGTAAACAAACGGCGGGAATA
TCTCAAGACTGTGGCTATGACATCTCCCGACAGCTCAACGGAGTCACAAT
CATTACACATACTACCTGACTACATGCTGGCTTTCGCTATTCCCGTGCTG
GTCCACGATCCACGCTTCACGAATCACGAGGACTACGTACAGCTGCGCAA
GATGGAGAAGTGCCTGCGTTTCATTCTGGAGCCGCTGATGGCCAAACGAG
AAACGTTTGTCCATAGCTTCTACAAGCAGCTGCTGCAGCTGATAAAGCAT
CGCGAGTTCAGTCTGGGGTCGGACAAGCGCGACAACTATAAAATGTGGGC
GCTCTGCGATCTTGCCATGTACATTATCGACTCCAAGTTCAGTCCATTTG
ATGGCAACACGAGCACCTTTTCCATGCCGCTGGCTTTGCCAGAAATGTAT
TATAAAGAGCCTGCCGTTGCGAATTTCCAAAACAATGACGTCTATATACC
GCTGGACGTGTATACGCTGGGAGCCAAATCCACGAGCAAAGCTGCCGCAA
CAGCAATGACAACGTCGCGAGCAGCAGTGGCTCCAAAGAGACCGGCGGAA
CAGTCAATCATGGATGATGAAAATCCGCAGGAGAACAATCTGTTCGACAA
CATACGAGCGGCTGACACTACGGAGCCCATGGCCAAACGAACGCGCGCAG
GAGCCGCTTCAGCCAAATCAGCAAGCTTTCTAGACCAT
BO32535.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:48:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pds5-RB | 3657 | CG17509-PB | 1..3654 | 17..3670 | 18270 | 100 | Plus |
| pds5-RA | 3657 | CG17509-PA | 1..3654 | 17..3670 | 18270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:48:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pds5-RB | 4929 | CG17509-RB | 529..4182 | 17..3670 | 18270 | 100 | Plus |
| pds5-RA | 4671 | CG17509-RA | 271..3924 | 17..3670 | 18270 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:48:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12030947..12031793 | 1961..2807 | 4235 | 100 | Plus |
| 2R | 25286936 | 2R | 12029664..12030405 | 861..1602 | 3710 | 100 | Plus |
| 2R | 25286936 | 2R | 12028715..12029102 | 96..483 | 1940 | 100 | Plus |
| 2R | 25286936 | 2R | 12032535..12032826 | 3290..3581 | 1460 | 100 | Plus |
| 2R | 25286936 | 2R | 12032197..12032462 | 3024..3289 | 1330 | 100 | Plus |
| 2R | 25286936 | 2R | 12030470..12030733 | 1603..1866 | 1320 | 100 | Plus |
| 2R | 25286936 | 2R | 12029166..12029373 | 484..691 | 1040 | 100 | Plus |
| 2R | 25286936 | 2R | 12029431..12029600 | 691..860 | 850 | 100 | Plus |
| 2R | 25286936 | 2R | 12031857..12031994 | 2806..2943 | 690 | 100 | Plus |
| 2R | 25286936 | 2R | 12030789..12030884 | 1865..1960 | 480 | 100 | Plus |
| 2R | 25286936 | 2R | 12032886..12032978 | 3578..3670 | 465 | 100 | Plus |
| 2R | 25286936 | 2R | 12028575..12028655 | 17..97 | 405 | 100 | Plus |
| 2R | 25286936 | 2R | 12032056..12032135 | 2944..3023 | 400 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 11:48:07 has no hits.
BO32535.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-27 15:28:15 Download gff for
BO32535.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pds5-RA | 264..3917 | 17..3672 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:32:42 Download gff for
BO32535.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pds5-RA | 271..3924 | 17..3672 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:51:32 Download gff for
BO32535.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pds5-RA | 271..3924 | 17..3672 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:51:32 Download gff for
BO32535.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12029166..12029373 | 484..691 | 100 | -> | Plus |
| 2R | 12029432..12029600 | 692..860 | 100 | -> | Plus |
| 2R | 12031858..12031994 | 2807..2943 | 100 | -> | Plus |
| 2R | 12032056..12032135 | 2944..3023 | 100 | -> | Plus |
| 2R | 12028575..12028655 | 17..97 | 100 | -> | Plus |
| 2R | 12028717..12029102 | 98..483 | 100 | -> | Plus |
| 2R | 12029664..12030405 | 861..1602 | 100 | -> | Plus |
| 2R | 12030470..12030733 | 1603..1866 | 100 | -> | Plus |
| 2R | 12030791..12030884 | 1867..1960 | 100 | -> | Plus |
| 2R | 12030947..12031792 | 1961..2806 | 100 | -> | Plus |
| 2R | 12032197..12032462 | 3024..3289 | 100 | -> | Plus |
| 2R | 12032535..12032825 | 3290..3580 | 100 | -> | Plus |
| 2R | 12032889..12032978 | 3581..3672 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:32:42 Download gff for
BO32535.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7916080..7916160 | 17..97 | 100 | -> | Plus |
| arm_2R | 7916222..7916607 | 98..483 | 100 | -> | Plus |
| arm_2R | 7916671..7916878 | 484..691 | 100 | -> | Plus |
| arm_2R | 7916937..7917105 | 692..860 | 100 | -> | Plus |
| arm_2R | 7917169..7917910 | 861..1602 | 100 | -> | Plus |
| arm_2R | 7917975..7918238 | 1603..1866 | 100 | -> | Plus |
| arm_2R | 7918296..7918389 | 1867..1960 | 100 | -> | Plus |
| arm_2R | 7918452..7919297 | 1961..2806 | 100 | -> | Plus |
| arm_2R | 7919363..7919499 | 2807..2943 | 100 | -> | Plus |
| arm_2R | 7919561..7919640 | 2944..3023 | 100 | -> | Plus |
| arm_2R | 7919702..7919967 | 3024..3289 | 100 | -> | Plus |
| arm_2R | 7920040..7920330 | 3290..3580 | 100 | -> | Plus |
| arm_2R | 7920394..7920483 | 3581..3672 | 97 | | Plus |
BO32535.pep Sequence
Translation from 16 to 3688
> BO32535.pep
MADIVYPTGCRPLVEDLGTDELIRRLKTLANVLQTMDQDDNLYQQYIPLA
LHLLDDFFMQHPSRDVQLLIACCVADVLRVYAPEAPYKEQDQIKTIFKFF
IKQLHGLKDPRDPSFKRYFYLLENLAFVKSFNMCFELEDCQEIFQDLFST
IFKIVNDQHSVKVTNFFLDVLSPLITEADNLSVELLDLILINIVEPYKSN
NKFACQLTEQLLTKTGDALESTIKMFFNRALVMDKPNTKLSITNKIYDII
YELNRINAGLLCSVLPQLENKLLSTDDAERLKATTLLSRMFSEKDSQLAK
KYPNLLKIFFGRFCDITEPVRIKCVQSSMHFLLNHPSLQHDITEKLRLRN
HDLDEVVRHEVVMAIVETAKRDFTLVLEAPDLLEIVRERTLDKKYKIRRD
AMNGLAYIYKRAICEPNDLSTGLKVRVDWIKNKILHGYYKVGLEDRLLVE
RLLITCLVPYKLAPEERMKKLYHLLGDLDANATKAFVELQKNQMKTRNTV
SDWIKLHHSKEFTPRVLSQLSAKQANIAKLLPDPLKAAEYLTQFSNNLRK
DAQLLRCINIVLKRDVSCRECADTMGVLLKKLGAHVQSNLYYNTVKMLIE
RVASVMVDKESIGVLISLIEQCIEKGSMCEEIGISAQEAGERGLKLLAML
SYVFSAHFFTDTSLRHLISLLSYEQDYVAPLVLKTLTHLGRYQPLIDDPT
PAILDELAPVCKDFALIGTPKQAKHAVRCIFVNSQSSASTDGATSGAGSA
STTTQTVHPIFNEIIETLRLKLTPNCEHQRTKIVTLGHIAYNMPQAFLTP
IKNMIARRIVKELLIQEVPAQRDYELPEDSDWCAQEKLPPDTLCKLDALK
AMARWLLGLRTDEHAAQKTFRMLAAFVNQRGDLLGQNRLCGAEKSWLRLG
AACAMLKVCEQKGVGDQYSAEQYLQLSQLMADPVPEVREIFARKLHKGLS
RSLPRNCLPLDFMGLYVLAGLETERKLQDLVRHYAETDVNKRREYLKTVA
MTSPDSSTESQSLHILPDYMLAFAIPVLVHDPRFTNHEDYVQLRKMEKCL
RFILEPLMAKRETFVHSFYKQLLQLIKHREFSLGSDKRDNYKMWALCDLA
MYIIDSKFSPFDGNTSTFSMPLALPEMYYKEPAVANFQNNDVYIPLDVYT
LGAKSTSKAAATAMTTSRAAVAPKRPAEQSIMDDENPQENNLFDNIRAAD
TTEPMAKRTRAGAASAKSASFLDH
BO32535.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:11:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pds5-PB | 1218 | CG17509-PB | 1..1218 | 1..1218 | 6264 | 100 | Plus |
| pds5-PA | 1218 | CG17509-PA | 1..1218 | 1..1218 | 6264 | 100 | Plus |
