BO32543.complete Sequence
2392 bp assembled on 2012-07-27
GenBank Submission: KX795702
> BO32543.complete
GAAGTTATCAGTCGACATGCCAACCATGACACGGATGCATCGCCACTCCA
GTTCCAGTGCCGTGGTGGAGGAGTCGCGTGGCCGGCGCCGTGGAGTGGGC
GTGCCAGGAGTCGGAGACGCGAACAAGGAGAATTTCGGGGTGCACTTCAT
GAGCAGTCCCTTCGGCAATGCCAGTTTGATTGCCCTGCAGGATTTGAGCA
ACGTGCACGGAAAGAGTCCGCAGCGCAGGAGTTTCAGCGAGGGCAGTGGT
CCGCGGCAGGCCACGCCACAATTGGCGGCACTGCGCTGCTTGCCACGCAC
CACCGGTGGTGCAGTTGCTCTGGAGGATTCTCAGCTCTCCTCATCGCGAA
TGGGCGATACCACACTGGACCGCATGCTGGATGCCATCATAGAGTCGGCC
AGGAAGGAGGTGAGGTGTACGAAGACACTGCCAGGCGCCGGCGCCACCAC
TTCGACCACCATTTTGGCGGATAATGCCGAGTGGAGCGAGACCAGTGTCC
ACGAAATGGAGGTGCGCACGCCCACCCACTTGAAGCGGCAGCGGGTGGTG
CGGCGCAAGAACCCACACAAGACTACCACCATTAACCAAACGCAAAGTCA
CCAAGCCAAGAAGTTGGAGCCACTGCAGTTGGTTCCCAGCACCAAACGCT
GCCTGAGCTTCTCATCCAGTTCCGCCTCGAGTGATTTGGACGAGGATGAG
CAGCAGGTGGCCAAGAGGAGTTCGCTGGCCTCCCCCACCACCACACCTCC
CTCCCACTGCACCACCACCACCAGCAGCATCAGCAGCAGCAGCAGCAGTA
ATGGTGGTGCGGACATGGAGGCCAGTCAGCGGGGCAGCATCGATGTGAGC
ATCGCATTCGATGCCAAGGAGCAGCAACTTAATGTACATGTGATTCGCTG
TCGCGACTTGCAGCGCTCCCATGGCAGTGGAAACGGCAGCATCAACGCCT
ACGTCAAGGTGGCCCTGTCCGGAGGAGCCCAGCCACCCGGATACGGTGGC
CACTCGTCGGGGGGAAGCATGAGTTCCGGGTACCAACGCACCGCCGTCCA
TCGGCACTCGGGCCGCCCGTACTTCGATCAGCGATTCAACTTCCAGATTT
CCAGTGGCGAGGAGACCGCTGGACAGTATCTTCAGTTGGCCGTGTGGCAT
CGGGATCGCCATTTAAAACGCAGCGAGTTCCTGGGCTGCAGCACTTTTCC
ACTGAATGAGTTAGTGCATCCGGATTCGGGCGTCTCGGCAGGATCCTACA
AGCTGCATGCACAGGCATGTCCTCCGCCTACTAGCCGCCATAGCCAACCA
AAAGCCAACGCAGGCCAGGATCAAAAGCAGGAAACGGAAGCGGCGAAGGA
TCAGGATAAACAGCAGGACGATTCCCCCGCAGAAATGGCAGCAGCCGTCA
CAGTCACGCCCCAAAAACCGGTTGCCACTGGATCCGGTTCGGGATCGAAT
TCCGCAGCGATGGCACTGAACGACGAGGTGATCAGCATTAGCATCGATAG
CATGGGCAAAGAGGATCCTCTGCTACCCCAGCAGCCCCAGCAGCCCATGA
AGCTCAGCAAGAAGGCACTCCACCAGCGAGATGCCGACGAGAATCTCTTT
TTAAGATTCCTGGAGCTGGATCCGCCAGCGGATGGCAATGCAAACAGTAC
CACCACCCAGGCACAAGCGACGGGCTCCCAGTCCTCGGCGTCGAAGGCCA
ACGAAAGCAATGCCAACCACTTGAACAATGGGACATCCGGTGGACGCAGA
CAGTCCACCATGCCAAATAGCGGAGGATCTAGCGTAGGAGGCGCTGTCCG
CCAGCAGCAGGGACGTACCCCATTCACCATGACGAAAAGACTTACGCGAA
CCGAGGAACGGGGCTTTGGATTCTCTATTGTCTGGACGCATCCGCCACGG
GTGGAGAAAATCGAGGCGGGACTCTCGGCCGATCGGTGTGGCATTTTGCC
CGGCGACTATGTGATCTTTGTGGACAAGCATAACGTCGTCACGATGCCCG
AGGCTGATGTTCTGAATTTGATACGATCGCAGGGCTCGTCCTTGACGTTG
GAGATATTCAGAAGGTCAGGCGCGGGCGCCACAACAATCACGTCGACGGA
CTTGGGCCAGAACAATGTACACATAAGCACCAGATTGGGCGCGGCAGTGG
GCTTGGGCAGCGAGGAGCACACCCTGGCCACCACCGCAACAGGAACGACC
ACCGTAATGAGTCTGCAAAGGACCACCAGTACGAGGATCCAGCCATTGGC
AAATAGCATGAGCCGGCCGGCTACCGCATGCTCGGGAACCACCTCCTCCA
TCGAGGCGGCCAAAAGGAGGCTTCACCTGCCACAGGTCACCTTCAGCAAG
GAGGTAGGCAAAGGTGTCTTCGTCGCAAGCTTTCTAGACCAT
BO32543.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:48:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PsGEF-RB | 2361 | CG43947-PB | 1..2358 | 17..2374 | 11790 | 100 | Plus |
| PsGEF-RI | 4212 | CG43947-PI | 1..2337 | 17..2353 | 11685 | 100 | Plus |
| PsGEF-RH | 6021 | CG43947-PH | 1..2337 | 17..2353 | 11685 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:48:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PsGEF-RB | 2838 | CG43947-RB | 257..2617 | 14..2374 | 11805 | 100 | Plus |
| PsGEF-RI | 6425 | CG43947-RI | 257..2596 | 14..2353 | 11700 | 100 | Plus |
| PsGEF-RH | 9240 | CG43947-RH | 257..2596 | 14..2353 | 11700 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:48:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2380738..2381944 | 2374..1168 | 6035 | 100 | Minus |
| X | 23542271 | X | 2384853..2385729 | 890..14 | 4385 | 100 | Minus |
| X | 23542271 | X | 2384239..2384516 | 1167..890 | 1390 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 11:48:26 has no hits.
BO32543.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-27 15:28:18 Download gff for
BO32543.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PsGEF-RB | 259..2616 | 17..2376 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:32:51 Download gff for
BO32543.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PsGEF-RB | 260..2617 | 17..2376 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:51:39 Download gff for
BO32543.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PsGEF-RB | 260..2617 | 17..2376 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:51:39 Download gff for
BO32543.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2380736..2381944 | 1168..2376 | 99 | <- | Minus |
| X | 2384239..2384515 | 891..1167 | 100 | <- | Minus |
| X | 2384853..2385726 | 17..890 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:32:51 Download gff for
BO32543.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2274769..2275977 | 1168..2376 | 99 | <- | Minus |
| arm_X | 2278272..2278548 | 891..1167 | 100 | <- | Minus |
| arm_X | 2278886..2279759 | 17..890 | 100 | | Minus |
BO32543.pep Sequence
Translation from 16 to 2392
> BO32543.pep
MPTMTRMHRHSSSSAVVEESRGRRRGVGVPGVGDANKENFGVHFMSSPFG
NASLIALQDLSNVHGKSPQRRSFSEGSGPRQATPQLAALRCLPRTTGGAV
ALEDSQLSSSRMGDTTLDRMLDAIIESARKEVRCTKTLPGAGATTSTTIL
ADNAEWSETSVHEMEVRTPTHLKRQRVVRRKNPHKTTTINQTQSHQAKKL
EPLQLVPSTKRCLSFSSSSASSDLDEDEQQVAKRSSLASPTTTPPSHCTT
TTSSISSSSSSNGGADMEASQRGSIDVSIAFDAKEQQLNVHVIRCRDLQR
SHGSGNGSINAYVKVALSGGAQPPGYGGHSSGGSMSSGYQRTAVHRHSGR
PYFDQRFNFQISSGEETAGQYLQLAVWHRDRHLKRSEFLGCSTFPLNELV
HPDSGVSAGSYKLHAQACPPPTSRHSQPKANAGQDQKQETEAAKDQDKQQ
DDSPAEMAAAVTVTPQKPVATGSGSGSNSAAMALNDEVISISIDSMGKED
PLLPQQPQQPMKLSKKALHQRDADENLFLRFLELDPPADGNANSTTTQAQ
ATGSQSSASKANESNANHLNNGTSGGRRQSTMPNSGGSSVGGAVRQQQGR
TPFTMTKRLTRTEERGFGFSIVWTHPPRVEKIEAGLSADRCGILPGDYVI
FVDKHNVVTMPEADVLNLIRSQGSSLTLEIFRRSGAGATTITSTDLGQNN
VHISTRLGAAVGLGSEEHTLATTATGTTTVMSLQRTTSTRIQPLANSMSR
PATACSGTTSSIEAAKRRLHLPQVTFSKEVGKGVFVASFLDH
BO32543.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:11:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PsGEF-PB | 786 | CG43947-PB | 1..786 | 1..786 | 4019 | 100 | Plus |
| PsGEF-PI | 1403 | CG43947-PI | 1..779 | 1..779 | 3984 | 100 | Plus |
| PsGEF-PH | 2006 | CG43947-PH | 1..779 | 1..779 | 3984 | 100 | Plus |
| PsGEF-PG | 2033 | CG43947-PG | 1..779 | 1..779 | 3984 | 100 | Plus |
| PsGEF-PF | 2738 | CG43947-PF | 1..779 | 1..779 | 3984 | 100 | Plus |
