BO32550.complete Sequence
3793 bp assembled on 2012-07-27
GenBank Submission: KX794549
> BO32550.complete
GAAGTTATCAGTCGACATGTTGGAGGACACCCAACTGGTGTGGGTGCGAG
ATGCCGCCGAGGGCTATATACAGGGTAGGATCACCGAGATCGGCGCCAAG
GAGTTCGAGGTTACGCCCACCGATCGCAAGTATCCGAAGCGCACGTGTCA
CTTCGATGATATCCACTCTTCGTGCGATGGACCCCAGGATCACGATGACA
ACTGCGAACTCATGCTGCTCAACGAGGCCACATTTCTGGACAATTTGAAA
ACGCGTTACTACAAAGACAAGATCTACACATATGTGGCCAACATACTAAT
CGCCGTGAATCCGTATCGTGAGATAAAGGAGCTCTACGCACCCGATACCA
TCAAGAAGTACAATGGTCGTTCCCTGGGTGAACTGCCTCCTCATGTCTTT
GCTATTGCGGATAAAGCCATACGCGATATGCGGGTATACAAATTGTCCCA
GTCGATCATCGTGTCCGGAGAGTCCGGCGCCGGCAAGACGGAGTCCACCA
AATACCTGCTCAAATACCTGTGCTATTCGCACGACAGTGCCGGTCCCATA
GAGACCAAGATATTGGATGCCAATCCCGTGCTGGAGGCCTTTGGCAATGC
CAAGACAACCAGAAACAACAACTCCTCGCGATTTGGAAAGTTCATTGAGG
TGCACTACGATGCCAAGTGCCAGGTGGTCGGTGGTTACATATCGCACTAC
TTGCTGGAGAAGAGTCGCATCTGTACGCAGAGCGCCGAGGAGCGAAACTA
TCATGTTTTCTACATGCTCCTCGCCGGAGCTCCGCAGCAGCTGCGCGATA
AGCTGAGCTTGGGCAAGCCAGATGATTACAGGTATCTCTCTGGCTGCACA
CAGTACTTTGCGAACGCCAAGACGGAGCAGCTAATACCGGGCTCACAAAA
GTCGAAGAATCACCAGCAGAAGGGTCCACTTAAGGATCCGATTATCGATG
ATTATCAGCACTTCCACAACCTTGACAAGGCCTTGGGTCGTCTGGGACTC
TCGGATACGGAGAAGCTGGGCATCTATTCGCTGGTGGCAGCTGTGCTCCA
CCTGGGCAACATTGCTTTCGAGGAGATACCCGATGATGTGCGCGGTGGCT
GCCAGGTTTCGGAGGCTTCGGAGCAGTCGCTGACTATCACCAGTGGCCTG
TTGGGTGTAGATCAAACTGAGCTGCGCACTGCCCTGGTATCCCGAGTGAT
GCAGAGCAAGGGAGGCGGCTTTAAGGGCACGGTTATCATGGTTCCTCTAA
AGATCTACGAGGCAAGCAATGCTCGGGATGCCTTGGCCAAGGCCATCTAC
AGTCGACTATTCGATCGCATTGTGGGCCTGATCAACCAGAGCATTCCCTT
CCAGGCTTCAAACTTTTACATCGGCGTGCTCGATATTGCTGGATTTGAGT
ACTTCACGGTGAACTCCTTCGAGCAGTTCTGCATCAACTACTGCAATGAG
AAGCTGCAGAAGTTTTTCAACGATAATATATTGAAAAACGAGCAGGAGCT
GTACAAACGCGAAGGCCTCAATGTGCCCGAGATCACTTTCACGGATAACC
AGGACATCATCGAGCTGATCGAGGCCAAGTCGAATGGCATCTTTACGCTG
CTCGACGAGGAGTCCAAGCTTCCGAAGCCCTCGTACTCGCATTTCACCGC
CGAGGTGCACAAGTCCTGGGCGAATCACTATCGCCTGGGTCTGCCGAGAT
CATCGCGACTAAAGGCCCACCGCACTCTGCGCGATGAGGAGGGCTTCCTG
GTGCGTCACTTTGCCGGAGCTGTGTGCTACAACACGGAGCAGTTCATTGA
GAAGAACAACGACGCCCTGCATGCTTCGCTGGAGGGTTTGGTCCAGGAGT
GCGATAATCCCCTGCTGCAGACCCTTTTCCCTTCGGGAAGTAGTACTTCG
GTTCGTGGAAAGCTTAACTTTATATCCGTGGGATCTAAGTTCAAGACTCA
GCTGGGCGAGCTAATGGAGAAACTGGAGCAGAACGGCACCAACTTCATAC
GCTGCATCAAGCCCAACAGCAAGATGATCGACCGACAGTTTGAGGGCAGC
CTGGCGCTGGCCCAACTGAAGTGTTCGGGCACAATTTCGGTGCTGGAACT
CATGGAGCACGGTTATCCATCGCGTGTTCTATTTGCCGATCTCTACAGCA
TGTACAAATCGGTGCTGCCGCCGGAACTTGTTTCACTGCCGGCGCGCACC
TTCTGCGAAGCCATGTTCCAGTCCCTCAATCTGAGCGCCAAGGACTTCAA
GTTCGGTATCACCAAGGTCTTCTTCCGGCCTGGTAAATTCGTGGAGTTCG
ATCGCATCATGCGCTCTGATCCGGAGAATATGCTGGCCATAGTGGCCAAG
GTCAAGAAGTGGCTGATTCGATCGCGTTGGGTCAAGTCCGCTCTGGGAGC
CCTCTGCGTGATCAAGCTGCGTAATCGAATCATCTACCGCAACAAGTGTG
TTCTAATAGCCCAGCGTATTGCACGTGGTTTCCTGGCCCGGAAGCAGCAT
CGCCCACGCTACCAGGGTATTGGCAAGATCAACAAGATCCGGACTAACAC
CCTCAAGACAATCGAAATAGCAAGTGGACTGAAGATGGGTCGTGAAGAGA
TTATTAGCGGGGTAAACGATATCTATAGGCAGATCGATGATGCCATCAAG
AAAATCAAGATGAATCCACGCATTACTCAACGGGAAATGGACTCGATGTA
CACCGTGGTCATGGCCAACATGAACAAGCTAACAGTTGATCTGAACACCA
AGCTTAAGGAGCAGCAACAGGCCGAGGAGCAGGAGCGTCTGCGCAAGATC
CAAGAGGCCCTGGAGGCCGAGCGGGCCGCCAAGGAGGCGGAGGAGCAGCG
CCAGCGCGAGGAAATCGAAAACAAGCGACTAAAAGCGGAGATGGAAACAC
GACGAAAGGCAGCGGAAGCTCAGCGCCTGCGTCAAGAGGAGGAGGATAGA
CGTGCCGCCTTGGCGCTGCAGGAGCAGTTGGAAAAGGAAGCCAAGGATGA
TGCCAAATACCGGCAGCAGCTCGAACAGGAACGTCGCGATCACGAGTTGG
CCCTGCGTTTGGCCAACGAGTCCAATGGCCAGGTGGAGGATAGTCCACCA
GTTATACGCAATGGTGTCAATGACGCGTCTCCCATGGGCCCAAACAAATT
GATCAGATCCGAAAATGTTCGAGCCCAACAACAGGCCCTGGGCAAGCAGA
AGTACGACTTGTCCAAGTGGAAGTACTCGGAGCTGCGTGATGCTATCAAC
ACGTCCTGTGATATTGAGCTGCTGGAGGCCTGCCGTCAGGAGTTCCATCG
CCGCTTGAAGGTGTACCACGCCTGGAAGGCAAAGAACCGCAAGCGCACCA
CCATGGATGAAAACGAGCGTGCGCCACGCAGCGTTATGGAAGCTGCCTTC
AAGCAGCCGCCTTTGGTTCAGCCAATCCAGGAGATTGTGACCGCCCAGCA
TCGCTACTTCCGGATTCCCTTCATGCGAGCCAATGCGCCGGACAACACCA
AGCGCGGCCTGTGGTATGCCCACTTTGATGGCCAGTGGATCGCACGCCAG
ATGGAACTGCATGCGGACAAGCCGCCAATTCTACTGGTAGCCGGAACGGA
CGACATGCAGATGTGCGAACTGAGCCTGGAGGAGACGGGTCTGACGCGCA
AGCGCGGCGCCGAGATCCTGGAGCACGAGTTCAATCGCGAATGGGAGCGC
AACGGGGGCAAGGCTTATAAGAATTTGGGTGCGGCAAAACCGAATGGGCC
GGCTGCAGCAATGCAGAAACAACAGGCAAGCTTTCTAGACCAT
BO32550.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:48:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| jar-RM | 3762 | CG5695-PM | 1..3759 | 17..3775 | 18765 | 99.9 | Plus |
| jar-RK | 3762 | CG5695-PK | 1..3759 | 17..3775 | 18765 | 99.9 | Plus |
| jar-RJ | 3762 | CG5695-PJ | 1..3759 | 17..3775 | 18765 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:48:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| jar-RM | 5025 | CG5695-RM | 811..4569 | 17..3775 | 18765 | 99.9 | Plus |
| jar-RK | 4550 | CG5695-RK | 344..4102 | 17..3775 | 18765 | 99.9 | Plus |
| jar-RJ | 4279 | CG5695-RJ | 344..4102 | 17..3775 | 18765 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:48:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24256359..24257104 | 1985..1240 | 3730 | 100 | Minus |
| 3R | 32079331 | 3R | 24255869..24256301 | 2417..1985 | 2150 | 99.8 | Minus |
| 3R | 32079331 | 3R | 24257176..24257584 | 1240..832 | 2045 | 100 | Minus |
| 3R | 32079331 | 3R | 24253321..24253598 | 3775..3498 | 1390 | 100 | Minus |
| 3R | 32079331 | 3R | 24257648..24257911 | 832..569 | 1320 | 100 | Minus |
| 3R | 32079331 | 3R | 24255562..24255803 | 2659..2418 | 1210 | 100 | Minus |
| 3R | 32079331 | 3R | 24254994..24255224 | 3111..2881 | 1155 | 100 | Minus |
| 3R | 32079331 | 3R | 24255285..24255507 | 2880..2658 | 1115 | 100 | Minus |
| 3R | 32079331 | 3R | 24259054..24259241 | 204..17 | 925 | 99.5 | Minus |
| 3R | 32079331 | 3R | 24257971..24258138 | 569..402 | 825 | 99.4 | Minus |
| 3R | 32079331 | 3R | 24258196..24258325 | 407..278 | 650 | 100 | Minus |
| 3R | 32079331 | 3R | 24254003..24254127 | 3278..3154 | 625 | 100 | Minus |
| 3R | 32079331 | 3R | 24253828..24253947 | 3395..3276 | 600 | 100 | Minus |
| 3R | 32079331 | 3R | 24253663..24253765 | 3497..3395 | 515 | 100 | Minus |
| 3R | 32079331 | 3R | 24258385..24258458 | 277..204 | 370 | 100 | Minus |
| 3R | 32079331 | 3R | 24254634..24254678 | 3156..3112 | 225 | 100 | Minus |
| 3L | 28110227 | 3L | 1326556..1326630 | 571..645 | 225 | 86.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 11:48:37 has no hits.
BO32550.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-27 15:28:20 Download gff for
BO32550.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| jar-RJ | 347..4100 | 22..3777 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:32:54 Download gff for
BO32550.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| jar-RJ | 349..4102 | 22..3777 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:51:44 Download gff for
BO32550.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| jar-RJ | 349..4102 | 22..3777 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:51:44 Download gff for
BO32550.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24255285..24255505 | 2660..2880 | 100 | <- | Minus |
| 3R | 24255562..24255803 | 2418..2659 | 100 | <- | Minus |
| 3R | 24254004..24254124 | 3157..3277 | 100 | <- | Minus |
| 3R | 24254634..24254678 | 3112..3156 | 100 | <- | Minus |
| 3R | 24258196..24258325 | 278..407 | 100 | <- | Minus |
| 3R | 24258385..24258458 | 204..277 | 100 | <- | Minus |
| 3R | 24254994..24255224 | 2881..3111 | 100 | <- | Minus |
| 3R | 24253319..24253598 | 3498..3777 | 99 | <- | Minus |
| 3R | 24253663..24253764 | 3396..3497 | 100 | <- | Minus |
| 3R | 24253828..24253945 | 3278..3395 | 100 | <- | Minus |
| 3R | 24257648..24257910 | 570..832 | 100 | <- | Minus |
| 3R | 24257971..24258132 | 408..569 | 100 | <- | Minus |
| 3R | 24255869..24256301 | 1985..2417 | 99 | <- | Minus |
| 3R | 24256360..24257104 | 1240..1984 | 100 | <- | Minus |
| 3R | 24257177..24257583 | 833..1239 | 100 | <- | Minus |
| 3R | 24259055..24259236 | 22..203 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:32:54 Download gff for
BO32550.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20083693..20083854 | 408..569 | 100 | <- | Minus |
| arm_3R | 20083918..20084047 | 278..407 | 100 | <- | Minus |
| arm_3R | 20084107..20084180 | 204..277 | 100 | <- | Minus |
| arm_3R | 20084777..20084958 | 22..203 | 99 | | Minus |
| arm_3R | 20079550..20079667 | 3278..3395 | 100 | <- | Minus |
| arm_3R | 20079726..20079846 | 3157..3277 | 100 | <- | Minus |
| arm_3R | 20080356..20080400 | 3112..3156 | 100 | <- | Minus |
| arm_3R | 20079041..20079320 | 3498..3777 | 99 | <- | Minus |
| arm_3R | 20079385..20079486 | 3396..3497 | 100 | <- | Minus |
| arm_3R | 20080716..20080946 | 2881..3111 | 100 | <- | Minus |
| arm_3R | 20081007..20081227 | 2660..2880 | 100 | <- | Minus |
| arm_3R | 20081284..20081525 | 2418..2659 | 100 | <- | Minus |
| arm_3R | 20081591..20082023 | 1985..2417 | 99 | <- | Minus |
| arm_3R | 20082082..20082826 | 1240..1984 | 100 | <- | Minus |
| arm_3R | 20082899..20083305 | 833..1239 | 100 | <- | Minus |
| arm_3R | 20083370..20083632 | 570..832 | 100 | <- | Minus |
BO32550.pep Sequence
Translation from 16 to 3793
> BO32550.pep
MLEDTQLVWVRDAAEGYIQGRITEIGAKEFEVTPTDRKYPKRTCHFDDIH
SSCDGPQDHDDNCELMLLNEATFLDNLKTRYYKDKIYTYVANILIAVNPY
REIKELYAPDTIKKYNGRSLGELPPHVFAIADKAIRDMRVYKLSQSIIVS
GESGAGKTESTKYLLKYLCYSHDSAGPIETKILDANPVLEAFGNAKTTRN
NNSSRFGKFIEVHYDAKCQVVGGYISHYLLEKSRICTQSAEERNYHVFYM
LLAGAPQQLRDKLSLGKPDDYRYLSGCTQYFANAKTEQLIPGSQKSKNHQ
QKGPLKDPIIDDYQHFHNLDKALGRLGLSDTEKLGIYSLVAAVLHLGNIA
FEEIPDDVRGGCQVSEASEQSLTITSGLLGVDQTELRTALVSRVMQSKGG
GFKGTVIMVPLKIYEASNARDALAKAIYSRLFDRIVGLINQSIPFQASNF
YIGVLDIAGFEYFTVNSFEQFCINYCNEKLQKFFNDNILKNEQELYKREG
LNVPEITFTDNQDIIELIEAKSNGIFTLLDEESKLPKPSYSHFTAEVHKS
WANHYRLGLPRSSRLKAHRTLRDEEGFLVRHFAGAVCYNTEQFIEKNNDA
LHASLEGLVQECDNPLLQTLFPSGSSTSVRGKLNFISVGSKFKTQLGELM
EKLEQNGTNFIRCIKPNSKMIDRQFEGSLALAQLKCSGTISVLELMEHGY
PSRVLFADLYSMYKSVLPPELVSLPARTFCEAMFQSLNLSAKDFKFGITK
VFFRPGKFVEFDRIMRSDPENMLAIVAKVKKWLIRSRWVKSALGALCVIK
LRNRIIYRNKCVLIAQRIARGFLARKQHRPRYQGIGKINKIRTNTLKTIE
IASGLKMGREEIISGVNDIYRQIDDAIKKIKMNPRITQREMDSMYTVVMA
NMNKLTVDLNTKLKEQQQAEEQERLRKIQEALEAERAAKEAEEQRQREEI
ENKRLKAEMETRRKAAEAQRLRQEEEDRRAALALQEQLEKEAKDDAKYRQ
QLEQERRDHELALRLANESNGQVEDSPPVIRNGVNDASPMGPNKLIRSEN
VRAQQQALGKQKYDLSKWKYSELRDAINTSCDIELLEACRQEFHRRLKVY
HAWKAKNRKRTTMDENERAPRSVMEAAFKQPPLVQPIQEIVTAQHRYFRI
PFMRANAPDNTKRGLWYAHFDGQWIARQMELHADKPPILLVAGTDDMQMC
ELSLEETGLTRKRGAEILEHEFNREWERNGGKAYKNLGAAKPNGPAAAMQ
KQQASFLDH
BO32550.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:11:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| jar-PM | 1253 | CG5695-PM | 1..1253 | 1..1253 | 6484 | 100 | Plus |
| jar-PK | 1253 | CG5695-PK | 1..1253 | 1..1253 | 6484 | 100 | Plus |
| jar-PJ | 1253 | CG5695-PJ | 1..1253 | 1..1253 | 6484 | 100 | Plus |
| jar-PG | 1253 | CG5695-PG | 1..1253 | 1..1253 | 6484 | 100 | Plus |
| jar-PB | 1253 | CG5695-PB | 1..1253 | 1..1253 | 6484 | 100 | Plus |
