BO32555.complete Sequence
3235 bp assembled on 2012-07-27
GenBank Submission: KX796207
> BO32555.complete
GAAGTTATCAGTCGACATGGCAACAACAACAACTACGCAGGCAGCAGGAG
CTGCACCAGCTCTCAATTTATTGCCCGCCAGCAATAACAATATAAATAAT
ACACTGATCAACAACAACAATAATAATAATAATACTAGTAACAGTAATAA
TAATAATAACAACGTTATAAGCCAGCCGATTAAAATACCGCTAACCGAGC
GCTTCTCATCGCAAACATCGACGGGCTCGGCGGATAGCGGTGTAATTGTT
TCCAGTGCATCGCAGCAGCAACTGCAGTTGCCACCACCACGCAGTAGCAG
TGGATCGCTGAGTCTGCCACAAGCGCCACCTGGCGGCAAGTGGCGGCAGA
AGCAGCAGCGCCAACAGTTGCTGCTCAGCCAGGACAGCGGCATCGAAAAT
GGTGTCACCACTCGTCCATCGAAAGCCAAGGACAACCAGGGTGCGGGAAA
AGCCAGTCACAATGCCACAAGCTCGAAGGAGAGCGGCGCGCAGTCGAACA
GCAGCAGCGAGAGCCTGGGCAGCAATTGCTCCGAGGCCCAGGAGCAGCAG
AGAGTAAGAGCCTCCTCCGCTCTGGAGCTCAGCAGCGTGGACACTCCCGT
GATCGTCGGCGGTGTGGTCAGTGGAGGCAACAGCATCTTGCGCAGCCGCA
TTAAGTACAAGAGTACGAACAGCACCGGAACCCAGGGATTCGATGTGGAG
GATCGCATCGATGAGGTGGATATCTGTGATGATGATGATGTCGACTGCGA
TGATCGCGGATCGGAGATCGAGGAGGAGGAGGAGGAGGAGGAGGACGACG
GCGTCAATGTGGACGACGATGTCGAGGAGGCCGACAACCAGTCGGACAAT
CAGTCGGGTATTATAATAAACCTCAAGAGCCAAACCGAACAAGAGGAGGA
GGTCGATGAGGTGGATGCCAAGCCGAAGAACCGACTTTTGCCACCGGATC
AGGCGGAACTCACAGTGGCGGCGGCCATGGCACGTCGACGCGATGCCAAG
AGCCTGGCCACCGACGGTCACATATATTTCCCACTGCTCAAGATCAGCGA
GGATCCGCACATTGATTCGAAGCTGATCAATCGCAAGGATGGCCTCCAGG
ACACCATGTATTATTTGGACGAATTCGGCAGTCCAAAGTTGCGAGAGAAG
TTCGCCCGCAAGCAGAAGCAGCTGCTCGCCAAGCAGCAGAAGCAGTTGAT
GAAACGTGAAAGGAGGAGCGAGGAGCAGCGCAAGAAGCGAAACACCACCG
TGGCATCCAACTTGGCGGCCAGCGGAGCGGTGGTGGACGACACCAAAGAT
GATTACAAACAACAACCACACTGTGATACTAGCTCTAGGAGCAAAAATAA
CTCGGTACCCAATCCACCCAGCAGCCATCTCCATCAGAACCACAATCATC
TCGTTGTGGATGTGCAAGAGGATGTGGATGATGTGAATGTGGTTGCCACC
AGCGACGTGGACAGTGGTGTCGTCAAGATGCGCCGCCATAGCCACGATAA
CCACTACGACCGAATTCCCCGGAGCAATGCTGCCACCATTACCACCCGCC
CTCAAATCGACCAACAGTCGTCGCACCACCAGAACACCGAGGATGTGGAG
CAAGGAGCTGAGCCCCAAATCGATGGCGAAGCGGATCTGGATGCGGATGC
GGATGCGGACAGCGATGGGAGTGGCGAGAACGTTAAGACTGCCAAATTGG
CCAGAACACAGTCCTGCGTCAGTTGGACCAAAGTGGTGCAAAAGTTCAAG
AATATATTAGGTCGCGATGGTTCTAAAATCACAACAGTTGTTGCAACACC
CGGCCAAGGCACCGATCGCGTACAAGAGGTCTCCTATACAGACACAAAGG
TCATCGGCAATGGCAGCTTCGGCGTCGTGTTCCAGGCAAAGCTCTGCGAT
ACCGGCGAACTGGTGGCAATCAAAAAAGTTTTACAAGACAGACGATTTAA
GAATCGCGAATTGCAAATAATGCGCAAATTGGAGCATTGTAATATTGTGA
AGCTTTTGTACTTTTTCTATTCGAGTGGTGAAAAGCGTGATGAAGTATTT
TTGAATTTAGTCCTCGAATATATACCAGAAACCGTATACAAAGTGGCTCG
CCAATATGCCAAAACCAAGCAAACGATACCAATCAACTTTATTCGGCTCT
ACATGTATCAACTGTTCAGAAGTTTGGCCTACATCCACTCGCTGGGCATT
TGCCATCGTGATATCAAGCCGCAGAATCTTCTGCTCGATCCGGAGACGGC
TGTGCTGAAGCTCTGTGACTTTGGCAGCGCCAAACAGCTGCTGCACGGCG
AGCCGAATGTATCGTATATCTGCTCCCGGTATTACCGCGCCCCCGAGCTC
ATCTTTGGCGCCATCAATTATACAACAAAGATCGATGTCTGGAGTGCCGG
TTGCGTTTTGGCCGAACTGCTGCTGGGCCAGCCCATCTTCCCTGGCGATT
CCGGTGTGGATCAGCTCGTCGAGGTCATCAAGGTCCTGGGCACACCGACA
AGAGAACAGATACGCGAAATGAATCCAAACTACACGGAATTCAAGTTCCC
TCAGATTAAGAGTCATCCATGGCAGAAAGTTTTCCGTATACGCACTCCTA
CAGAAGCTATCAACTTGGTGTCCCTGCTGCTCGAGTATACGCCCAGTGCC
AGGATCACACCGCTCAAGGCCTGCGCACATCCGTTCTTCGATGAGCTACG
CATGGAGGGTAATCACACCTTGCCCAACGGTCGCGATATGCCGCCGCTGT
TCAACTTCACAGAGCATGAGCTCTCAATACAGCCCAGCCTAGTGCCGCAG
TTGTTGCCCAAGCATCTGCAGAACGCATCCGGACCTGGCGGCAATCGACC
CTCGGCCGGCGGAGCAGCCTCCATTGCGGCCAGCGGCTCCACCAGCGTCT
CGTCAACGGGCAGTGGTGCCTCGGTGGAAGGATCCGCCCAGCCACAGTCG
CAGGGTACAGCAGCAGCTGCGGGATCCGGATCGGGCGGAGCAACAGCAGG
AACCGGCGGAGCGAGTGCCGGTGGACCCGGATCTGGTAACAACAGTAGCA
GCGGCGGAGCATCGGGAGCGCCGTCCGCTGTGGCTGCCGGAGGAGCCAAT
GCCGCCGTCGCTGGCGGTGCTGGTGGTGGTGGCGGAGCCGGTGCGGCGAC
CGCAGCTGCAACAGCAACTGGCGCTATAGGCGCGACTAATGCCGGCGGCG
CCAATGTAACAGATTCAGCAAGCTTTCTAGACCAT
BO32555.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:48:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sgg-RD | 3204 | CG2621-PD | 1..3201 | 17..3217 | 16005 | 100 | Plus |
| sgg-RQ | 3507 | CG2621-PQ | 1..1745 | 17..1761 | 8725 | 100 | Plus |
| sgg-RP | 3381 | CG2621-PP | 1..1745 | 17..1761 | 8725 | 100 | Plus |
| sgg-RQ | 3507 | CG2621-PQ | 1863..3316 | 1759..3212 | 7270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:48:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sgg-RD | 4805 | CG2621-RD | 585..3785 | 17..3217 | 16005 | 100 | Plus |
| sgg-RQ | 4499 | CG5-RQ | 438..2182 | 17..1761 | 8725 | 100 | Plus |
| sgg-RP | 4750 | CG5-RP | 307..2051 | 17..1761 | 8725 | 100 | Plus |
| sgg-RQ | 4499 | CG5-RQ | 2300..3753 | 1759..3212 | 7270 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:48:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2659350..2661095 | 17..1762 | 8730 | 100 | Plus |
| X | 23542271 | X | 2673174..2673618 | 2768..3212 | 2225 | 100 | Plus |
| X | 23542271 | X | 2671307..2671545 | 2146..2384 | 1195 | 100 | Plus |
| X | 23542271 | X | 2671628..2671824 | 2384..2580 | 985 | 100 | Plus |
| X | 23542271 | X | 2669911..2670103 | 1759..1951 | 965 | 100 | Plus |
| X | 23542271 | X | 2672914..2673103 | 2579..2768 | 950 | 100 | Plus |
| X | 23542271 | X | 2671119..2671231 | 2034..2146 | 565 | 100 | Plus |
| 3R | 32079331 | 3R | 31373036..31373316 | 2213..2493 | 490 | 78.3 | Plus |
| X | 23542271 | X | 2670172..2670257 | 1950..2035 | 430 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 11:48:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2330..2848 | 20..524 | 159 | 54.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1048..1141 | 2928..3020 | 117 | 62.9 | Plus |
BO32555.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-27 15:28:22 Download gff for
BO32555.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sgg-RD | 580..3780 | 17..3219 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:32:59 Download gff for
BO32555.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sgg-RD | 585..3785 | 17..3219 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:51:48 Download gff for
BO32555.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sgg-RD | 585..3785 | 17..3219 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:51:48 Download gff for
BO32555.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2671121..2671231 | 2036..2146 | 100 | -> | Plus |
| X | 2671629..2671822 | 2385..2578 | 100 | -> | Plus |
| X | 2672914..2673103 | 2579..2768 | 100 | -> | Plus |
| X | 2669913..2670103 | 1761..1951 | 100 | -> | Plus |
| X | 2670174..2670257 | 1952..2035 | 100 | -> | Plus |
| X | 2659350..2661093 | 17..1760 | 100 | -> | Plus |
| X | 2671308..2671545 | 2147..2384 | 100 | -> | Plus |
| X | 2673175..2673623 | 2769..3219 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:32:59 Download gff for
BO32555.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2565662..2565855 | 2385..2578 | 100 | -> | Plus |
| arm_X | 2566947..2567136 | 2579..2768 | 100 | -> | Plus |
| arm_X | 2553383..2555126 | 17..1760 | 100 | -> | Plus |
| arm_X | 2563946..2564136 | 1761..1951 | 100 | -> | Plus |
| arm_X | 2564207..2564290 | 1952..2035 | 100 | -> | Plus |
| arm_X | 2565154..2565264 | 2036..2146 | 100 | -> | Plus |
| arm_X | 2565341..2565578 | 2147..2384 | 100 | -> | Plus |
| arm_X | 2567208..2567656 | 2769..3219 | 99 | | Plus |
BO32555.pep Sequence
Translation from 16 to 3235
> BO32555.pep
MATTTTTQAAGAAPALNLLPASNNNINNTLINNNNNNNNTSNSNNNNNNV
ISQPIKIPLTERFSSQTSTGSADSGVIVSSASQQQLQLPPPRSSSGSLSL
PQAPPGGKWRQKQQRQQLLLSQDSGIENGVTTRPSKAKDNQGAGKASHNA
TSSKESGAQSNSSSESLGSNCSEAQEQQRVRASSALELSSVDTPVIVGGV
VSGGNSILRSRIKYKSTNSTGTQGFDVEDRIDEVDICDDDDVDCDDRGSE
IEEEEEEEEDDGVNVDDDVEEADNQSDNQSGIIINLKSQTEQEEEVDEVD
AKPKNRLLPPDQAELTVAAAMARRRDAKSLATDGHIYFPLLKISEDPHID
SKLINRKDGLQDTMYYLDEFGSPKLREKFARKQKQLLAKQQKQLMKRERR
SEEQRKKRNTTVASNLAASGAVVDDTKDDYKQQPHCDTSSRSKNNSVPNP
PSSHLHQNHNHLVVDVQEDVDDVNVVATSDVDSGVVKMRRHSHDNHYDRI
PRSNAATITTRPQIDQQSSHHQNTEDVEQGAEPQIDGEADLDADADADSD
GSGENVKTAKLARTQSCVSWTKVVQKFKNILGRDGSKITTVVATPGQGTD
RVQEVSYTDTKVIGNGSFGVVFQAKLCDTGELVAIKKVLQDRRFKNRELQ
IMRKLEHCNIVKLLYFFYSSGEKRDEVFLNLVLEYIPETVYKVARQYAKT
KQTIPINFIRLYMYQLFRSLAYIHSLGICHRDIKPQNLLLDPETAVLKLC
DFGSAKQLLHGEPNVSYICSRYYRAPELIFGAINYTTKIDVWSAGCVLAE
LLLGQPIFPGDSGVDQLVEVIKVLGTPTREQIREMNPNYTEFKFPQIKSH
PWQKVFRIRTPTEAINLVSLLLEYTPSARITPLKACAHPFFDELRMEGNH
TLPNGRDMPPLFNFTEHELSIQPSLVPQLLPKHLQNASGPGGNRPSAGGA
ASIAASGSTSVSSTGSGASVEGSAQPQSQGTAAAAGSGSGGATAGTGGAS
AGGPGSGNNSSSGGASGAPSAVAAGGANAAVAGGAGGGGGAGAATAAATA
TGAIGATNAGGANVTDSASFLDH
BO32555.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:12:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sgg-PD | 1067 | CG2621-PD | 1..1067 | 1..1067 | 5472 | 100 | Plus |
| sgg-PQ | 1168 | CG2621-PQ | 1..1109 | 1..1069 | 5417 | 96.2 | Plus |
| sgg-PP | 1126 | CG2621-PP | 1..1126 | 1..1067 | 5391 | 94.8 | Plus |
| sgg-PG | 496 | CG2621-PG | 11..496 | 582..1067 | 2506 | 100 | Plus |
| sgg-PR | 597 | CG2621-PR | 51..538 | 582..1069 | 2502 | 99.6 | Plus |
