BO32556.complete Sequence
4888 bp assembled on 2012-07-27
GenBank Submission: KX796851
> BO32556.complete
GAAGTTATCAGTCGACATGTGGGCGGCAAAATATGTTTTATGCGCGCTAG
CATGCGTTGCATTTGCTTCAGCTTCTCCAAGCTCCGAGCGAAAAAGGAAA
AATGTCATGAATATTCCAGAGGATCCTAAAGTTTCTGACTCCTTGGCTGC
TTCTTTGGACATGAGCTGCTCGTCGGCCAAAATCCTTCCGCCGGAGATTA
ATCATGGTAGGGTGTCCGTTTTCGATCGCCGCCGGAGGGGAAAGAAGGTC
TTCCTAGTGGCCTTTTTCGTATGCGATGATAACTACGACTTTGAAAACGG
AATCTCAGAAATGTTTTGCTCGAACCAGAAATGGGTGGATGAAATACCCA
CCTGCATTCCCCAATTGAATTTTGAAGAACACGACGAGAAAGTAGGTTAC
GATTTGGAAGATTATTCCGACGAAACTGTGCCCAACGATTACGTCGAGAA
CAGTGATATTGATGAGGATGATGATGAAGAGGTTAGTGAAAGGGAACCAC
CACCGCCACCACCACCACCGGTAGTGGATGGAGCCGATTCCAAGCCTGAA
CCACAAATAGTTATCGAAATTAATGATGATCATGCAAATGAAGTCGTTGA
ATCAGAACCTGCTTTAGCGGAGACTGAAACTGAAAATGAGGTCCTTGAAA
ACGAAACTCCCCTGAAAGCGGAAGTCCAAACTGATGTACTCAACTCCAGC
AATGCATCTGTTAAGGTCACCAATGATCCTTATGAGCCAACATTCTTGGA
TAACAATTGTGGCGAAGACAATGGAGGCTGTGCGCACATTTGCAAGCGAT
TGCTTTATCCAGATGAAAACCAGCCCATCAATAAGTGCGATTGTCGAGAG
GGTTATACCCTGGATCCTAACGATTATGCTAGCTGCCTCGATATCGACGA
ATGCCTGGAATCGAATGGTGGTTGTTCGGAAATTTGCGAAAACCTTCCAG
GAGAATATAAATGTAGCTGCCAAGAGGGTTATTACTTAGACGAGTCAGGA
AAGAGTTGTGTTGACATTAATGAATGTGCGAATCCCGAGCTGTCATCGAA
TTGCCAGGGTGCTTGCGAGAATCTGCCAGGTTCATATCGCTGTGTGGAGC
CGCTGGAGGAGAATCCCGAGATCACGGAAGTCGTGGAGAATCCCATTGAG
AAGACCAACGAAGTCCCAGTGAACGTTTCCGAATCACAACCCGCCGGAAA
AACATGTAATTCTGGCTTTCAACTTTCCGCCGACGGCACTGATTGCCAGG
ACATTAATGAGTGCGAGGTAGACGGTCCTGAGGATCTTGATAATAACGCA
GTCTGTCAGCAAAAGTGCGAGAACACTATTGGATCATTCCGTTGCACCTG
CGTTGAAGGATACCACCTGCTCGAAGATCAACGAAGCTGTGCATTGGATA
GCTGTACGGATCTGGAGAATCCCCAGTTGAATCGCACTCGATGTGCCCAC
GAATGCCAGGATTTGCCAGAGGGAAGCTACCGATGCGTGTGTCCCAAGGG
TTATGAACTATCAGAGGATCAGCATTCCTGTTTGGTGCAAGAATCTCCAT
GCTCCACAGAAAAGGGAGTTGAAAAGTGCTCCCCGGGAACCTGTCTAGCC
AGTGAGGATAATACCAGCTTCAGTTGCATTTGCCCAACGGGCTACCGCAG
TGAGGCATTCAGTTGCCAGGACATTGATGAGTGCGCAGAGGATACACACC
TTTGCAGTCACACTTGCCAGAATACACCCGGTGGTTATCAGTGCCAGTGT
CCCGAAGGACTCAACCTGGTCGAGGAGTACACCTGTTTGGCCGAGAATCT
CTGCGAGGTGAACAACAACGGATGCGAACAGATCTGCCTGACTGCCCGAG
GAGGAGTTTGCGCCTGTCGCGAGGGATTTCGATTAAGTGCCGATGGCAAG
AGTTGCGAGGACGTGGATGAGTGTCTGGTAAATAACGGTGGCTGCCAGCA
GGTGTGCCGAAATCTTCCAGGTTCGTATGGGTGTATATGTGCCGCCGGCT
ATGAGCTCCTCAAGCTTGATGGCATACGCGGCTATTGCTTCGACATCGAC
GAGTGCTCGCAGAGAACTCATGGGTGCAGTGATCAAATGCTTTGCGAGAA
CCTCAATGGTTCGTACACCTGCCTCTGTCCACCGGGATATGCCCTTGGCT
TGGATAACCACATAGTCACATCACTAAACAGCTCATTCATTACTGATTCA
ACCTCATCCGAAACCCCATCAGCGCATACATGCTTGGACATTGATGAGTG
CTCTCTGGCCAATGGGAATTGCTCCCACTTTTGCCAGAACGAGCCTGGTG
GCTTTCAGTGCGCCTGTCCCTTGGGCTATGCCCTATCCGAGGATATGCGC
ACCTGTCAGGACATTGATGAGTGCCTCGATAGCAATGGCCAATGCTCGCA
GCTCTGCTTGAATCAACCTGGGGGATTTGCCTGCGCTTGTGAAACGGGTT
TCGAGCTAACTCCAGATGGATTCGGTTGCGCCGACATTGATGAGTGCTCG
CAGGACTATGGAAACTGTAGCGACATCTGCATCAATCTTTTAGGTACCCA
TGCCTGTGCCTGCGAAAGGGGCTATGAGCTGGCCAAGGACAAGCTAAGTT
GCCTGGATGTGGATGAGTGTGCCGGCCTTCTTTCCGGTGGTTGCAGCCAC
GAGTGCATCAATAAGGCAGGTACCTTTGAGTGTGGATGTCCCTTGGGTTA
CATACTCAACGACGATGGTCGTAGCTGTAGTCCCGCTCTGGTGGGTTGTC
CACCGGGAACTCAGCGATCCGCGGATGGATGTGCTCCAATTGAATGCAAT
CCGGGTTATACCCTGGGATCGGACGACAAGTGTGTGGACATCGATGAGTG
CCAGAAGCAGAACGGTGGCTGCTCGCATCGCTGCTCCAATACCGAGGGTT
CATTCAAGTGCAGCTGTCCACCGGGCTATGAACTAGATAGTGATCAAAAG
ACTTGCCAGGACATCGATGAGTGTGACCAAGACAAGACTAGTTGTATCAC
TGGAACCTGTATAAACGAGATTGGAGGCTTCCGCTGCGAGTTTCCCAAGT
TCCCCGTTCTGCCGGAGATTCCCACAGCTTCGTCACTGCCTGAATCGCCC
AAAATTGAATTGAAGACGCCAAAGTATCCTGATTTCACCGAGCTGTCCAA
TGAAATACCCGAGAATCCCAAGAAACCAGCTGAGTTCGATTACCCAGAGC
CCAAGTTTCCATCTTTGCCTAAGTGGGAAGGTCTTCCAAAGCTTCCGCCC
CTTGCTGACATACCTACATCGAAAGCACCCGTTCCCCTGCGTCCTGAAGT
GCCTAAAAGTCTGTGGGTTAATCAGTTGCAACCCAGGGATCTGTGCCCTC
GATTTCAGGCACCACGAAATGGCAAGTCCCACTGCAATAGGTATCGCCAT
AAGCAGAAGCTCTTCTACTACAGTCGCTGCCGAATTTCATGCAATTCGGG
CTATATTCTTCAGGGTCCTGAGATCAAAAGCTGTGACGCCAATGGAATTT
GGGAGGGGCCCGAAACCAAGTGTGTTGCCATCAACCAACCTCGTGCACAG
AGTCCTGGAATCTGCCCCGCTCTAAAGCCCGCCCAAAATGGAGTTATACT
CCCAGCTAGCTGCACTCAGGGTCCATCTCGATTTGGTGACGTTTGCCGTC
TTCAGTGCAATGCTGGCTTCGTGTCCACCGGATCCTTGTTGACCGCCTGC
ATGATGCTGCAGGGCTGGTCGTTCGGTGCAGATCTCAACTGTCAGCCATT
CGGAAACGGTTTGCTTGGAAATCAATTATCCCCGATGTGGAATTCTCCGA
AAACAGTGACTCCTCATCAAATCCAGAATGTGGAACAGATTAGGCCCTAT
ATCAATTGCCCGGAAAATGTTGTAATCCTACTGCATGCCGGTGAGCAGAA
GGCTCATGTGACTCTTCAAAGACCCCAAACTAATGTTAAGAATGGCCGAT
TGGTCGCCCATCCCGCTTGGGCTGGTCAACTTCAGGGTCATCTGCCAGCT
GGAGTCCATAAGGTTGACTTTAGAGTTAACGATCCGGAGACCAAGCTCAC
AATTAAATGTCACACAATAATTACTGTTAAGGCTGCAACACCTAGAGAAT
CAAATCCATTTACTTTGTTTCGAATATCTGATTATTCAAGATCATCACTT
CCCAGACCGGCTCCATTTGCGACTTTGTCCACTGGTAGTTCATTCTCATT
TCCTGCATTCAAAGCCCTGGATGCAACTCCAAAACCAGTTTCCTTTACCA
AATTCCAAGTTTTCCCAGATTCTGAGTCATCAGAGCACTCGAAACTTGGG
TCATCTTCCTTCTTCAGGCTGGAGCCCCTTTTCCACGAGTCATCCAAGCT
TATAAGTGCTGCTCCTGCTTCTAGTGAAAACACACGGGTGGATTTGGGTT
CGGATACCTCCAACTATTGTCCTCCATCCATTGAAGTATATCTGAAGGAG
AATCAGAATCTGCGTTCAGTGGTGTGGGATGAGCCACGATTCGAGGGAAA
ACTGCTCAAGATATATAAGTCACATTTTCCGGGTTCTTTGTTTAAAGTCG
GCGATCACGCAATCAAATATGAAGCCACCACCACCGATGGAAAAACTTTA
AGCTGCACATTTTTTATATACGTCAGATCTGCCAAGCCCACTCCTGCACC
CACCGAACCCAAGATCAGTTTTGATTCCGAGCCCGAAACTCTCTCCGATG
TTTCACAAACCTATGTGGTCTGTCCGGATAAGGAGCCCGTCCGGGTAACC
GCCGAATCCGTAAGTCTGCCCGTTGGTTGCACTCTGAAGAATATACGTCC
AAAATCGAGATCCCCGAAAGAGCTGAAACGCGGCAAGCTCACTTCTCTTT
GGCATCAGTATACAAATTTCGCAAGCTTTCTAGACCAT
BO32556.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:48:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| frac-RC | 4857 | CG7526-PC | 1..4854 | 17..4870 | 24270 | 100 | Plus |
| frac-RE | 4857 | CG7526-PE | 1..4854 | 17..4870 | 24270 | 100 | Plus |
| frac-RD | 4857 | CG7526-PD | 1..4854 | 17..4870 | 24270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:48:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| frac-RC | 5069 | CG7526-RC | 101..4954 | 17..4870 | 24270 | 100 | Plus |
| frac-RE | 5438 | CG7526-RE | 470..5323 | 17..4870 | 24270 | 100 | Plus |
| frac-RD | 5122 | CG7526-RD | 154..5007 | 17..4870 | 24270 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:48:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7565239..7567753 | 1013..3527 | 12575 | 100 | Plus |
| 3L | 28110227 | 3L | 7567821..7568819 | 3527..4525 | 4995 | 100 | Plus |
| 3L | 28110227 | 3L | 7564166..7564986 | 70..890 | 4105 | 100 | Plus |
| 3L | 28110227 | 3L | 7569076..7569215 | 4629..4768 | 700 | 100 | Plus |
| 3L | 28110227 | 3L | 7565048..7565171 | 890..1013 | 620 | 100 | Plus |
| 3L | 28110227 | 3L | 7569274..7569384 | 4760..4870 | 555 | 100 | Plus |
| 3L | 28110227 | 3L | 7568874..7568976 | 4526..4628 | 515 | 100 | Plus |
| 3L | 28110227 | 3L | 7563079..7563133 | 17..71 | 275 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 11:48:55 has no hits.
BO32556.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-27 15:28:22 Download gff for
BO32556.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7526-RC | 100..4953 | 17..4872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:01 Download gff for
BO32556.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| frac-RD | 154..5007 | 17..4872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:51:49 Download gff for
BO32556.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| frac-RD | 154..5007 | 17..4872 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:51:49 Download gff for
BO32556.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7569076..7569206 | 4629..4759 | 100 | -> | Plus |
| 3L | 7569274..7569384 | 4760..4872 | 98 | | Plus |
| 3L | 7563079..7563133 | 17..71 | 100 | -> | Plus |
| 3L | 7564168..7564986 | 72..890 | 100 | -> | Plus |
| 3L | 7565049..7565171 | 891..1013 | 100 | -> | Plus |
| 3L | 7565240..7567753 | 1014..3527 | 100 | -> | Plus |
| 3L | 7567822..7568819 | 3528..4525 | 100 | -> | Plus |
| 3L | 7568874..7568976 | 4526..4628 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:01 Download gff for
BO32556.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7562176..7562306 | 4629..4759 | 100 | -> | Plus |
| arm_3L | 7562374..7562484 | 4760..4872 | 98 | | Plus |
| arm_3L | 7556179..7556233 | 17..71 | 100 | -> | Plus |
| arm_3L | 7557268..7558086 | 72..890 | 100 | -> | Plus |
| arm_3L | 7558149..7558271 | 891..1013 | 100 | -> | Plus |
| arm_3L | 7558340..7560853 | 1014..3527 | 100 | -> | Plus |
| arm_3L | 7560922..7561919 | 3528..4525 | 100 | -> | Plus |
| arm_3L | 7561974..7562076 | 4526..4628 | 100 | -> | Plus |
BO32556.pep Sequence
Translation from 16 to 4888
> BO32556.pep
MWAAKYVLCALACVAFASASPSSERKRKNVMNIPEDPKVSDSLAASLDMS
CSSAKILPPEINHGRVSVFDRRRRGKKVFLVAFFVCDDNYDFENGISEMF
CSNQKWVDEIPTCIPQLNFEEHDEKVGYDLEDYSDETVPNDYVENSDIDE
DDDEEVSEREPPPPPPPPVVDGADSKPEPQIVIEINDDHANEVVESEPAL
AETETENEVLENETPLKAEVQTDVLNSSNASVKVTNDPYEPTFLDNNCGE
DNGGCAHICKRLLYPDENQPINKCDCREGYTLDPNDYASCLDIDECLESN
GGCSEICENLPGEYKCSCQEGYYLDESGKSCVDINECANPELSSNCQGAC
ENLPGSYRCVEPLEENPEITEVVENPIEKTNEVPVNVSESQPAGKTCNSG
FQLSADGTDCQDINECEVDGPEDLDNNAVCQQKCENTIGSFRCTCVEGYH
LLEDQRSCALDSCTDLENPQLNRTRCAHECQDLPEGSYRCVCPKGYELSE
DQHSCLVQESPCSTEKGVEKCSPGTCLASEDNTSFSCICPTGYRSEAFSC
QDIDECAEDTHLCSHTCQNTPGGYQCQCPEGLNLVEEYTCLAENLCEVNN
NGCEQICLTARGGVCACREGFRLSADGKSCEDVDECLVNNGGCQQVCRNL
PGSYGCICAAGYELLKLDGIRGYCFDIDECSQRTHGCSDQMLCENLNGSY
TCLCPPGYALGLDNHIVTSLNSSFITDSTSSETPSAHTCLDIDECSLANG
NCSHFCQNEPGGFQCACPLGYALSEDMRTCQDIDECLDSNGQCSQLCLNQ
PGGFACACETGFELTPDGFGCADIDECSQDYGNCSDICINLLGTHACACE
RGYELAKDKLSCLDVDECAGLLSGGCSHECINKAGTFECGCPLGYILNDD
GRSCSPALVGCPPGTQRSADGCAPIECNPGYTLGSDDKCVDIDECQKQNG
GCSHRCSNTEGSFKCSCPPGYELDSDQKTCQDIDECDQDKTSCITGTCIN
EIGGFRCEFPKFPVLPEIPTASSLPESPKIELKTPKYPDFTELSNEIPEN
PKKPAEFDYPEPKFPSLPKWEGLPKLPPLADIPTSKAPVPLRPEVPKSLW
VNQLQPRDLCPRFQAPRNGKSHCNRYRHKQKLFYYSRCRISCNSGYILQG
PEIKSCDANGIWEGPETKCVAINQPRAQSPGICPALKPAQNGVILPASCT
QGPSRFGDVCRLQCNAGFVSTGSLLTACMMLQGWSFGADLNCQPFGNGLL
GNQLSPMWNSPKTVTPHQIQNVEQIRPYINCPENVVILLHAGEQKAHVTL
QRPQTNVKNGRLVAHPAWAGQLQGHLPAGVHKVDFRVNDPETKLTIKCHT
IITVKAATPRESNPFTLFRISDYSRSSLPRPAPFATLSTGSSFSFPAFKA
LDATPKPVSFTKFQVFPDSESSEHSKLGSSSFFRLEPLFHESSKLISAAP
ASSENTRVDLGSDTSNYCPPSIEVYLKENQNLRSVVWDEPRFEGKLLKIY
KSHFPGSLFKVGDHAIKYEATTTDGKTLSCTFFIYVRSAKPTPAPTEPKI
SFDSEPETLSDVSQTYVVCPDKEPVRVTAESVSLPVGCTLKNIRPKSRSP
KELKRGKLTSLWHQYTNFASFLDH
BO32556.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:12:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| frac-PC | 1618 | CG7526-PC | 1..1618 | 1..1618 | 8936 | 100 | Plus |
| frac-PE | 1618 | CG7526-PE | 1..1618 | 1..1618 | 8936 | 100 | Plus |
| frac-PD | 1618 | CG7526-PD | 1..1618 | 1..1618 | 8936 | 100 | Plus |
| frac-PG | 1427 | CG7526-PG | 255..1427 | 476..1618 | 4790 | 77.4 | Plus |
| frac-PF | 1427 | CG7526-PF | 255..1427 | 476..1618 | 4790 | 77.4 | Plus |
| frac-PG | 1427 | CG7526-PG | 1..816 | 1..806 | 3900 | 87.3 | Plus |
| frac-PG | 1427 | CG7526-PG | 246..511 | 825..1028 | 285 | 32.1 | Plus |
