BO32561.complete Sequence
2167 bp assembled on 2012-09-18
GenBank Submission: KX799994
> BO32561.complete
GAAGTTATCAGTCGACATGGATGCCATCAAGAAGAAGATGCAAGCGATGA
AAGTCGACAAGGACGGAGCTCTGGAGCGCGCTCTCGTCTGCGAGCAGGAG
GCACGCGATGCTAACACCCGCGCCGAGAAGGCCGAGGAGGAGGCTCGCCA
GCTGCAGAAGAAGATCCAGACCGTTGAGAACGAGCTGGATCAGACCCAGG
AAGCCCTGACCCTGGTCACCGGCAAGCTGGAGGAGAAGAACAAGGCTCTG
CAGAACGAAAGTATTTCAAGGACATTTGGCATCGTTTCAAAAAGATCTCA
GCAGGTAAAGCGCTTGGAAAATTTATCGCTGGGAGTGGATCCACAAGAAA
AAACACAAGTGCAGCCGCAGTCGGGCAAAACAGTTGCCAAACCGAAACAG
AGGCAGCAGAAACAATTGTTCAAAAGTGATAAGGCGAAGGAGAAGTCCAG
CAGGCAGCAGAGAAAGCGAGCCGGCACCAGGAGCACTCGCAATCCGAGGA
CGCAATCGGAATCTTCGGGCCTGTCATCCCGTTGGTGTTCCATCGAAGAG
CAGTTGAACCTGCTGGACGACCTGCTCTACTACTGCGATGAGGAGGCCGA
ACTGTATCTAGCCCAGCTGTACGAAAGGTTCGAGACACTCCGGCGTAGCA
GGAGTTCCTCGCCAGTGAGCGATTTCTGGAGCGATTCCGACATGGAGCAC
GATGACTCCAGCACCAGTGGCACTGGCAGCCATACAGCCAGCAATACCAG
TCTAGTTCCCGCCTCGCTGAAGCGTCGTGGCCACCAGCATCATCCGCGAT
TCTCGGGCACTCGCCGTCCCAATGTGCCCAATGTCCAGGAGATTCTGGCC
GCACTCTATCGTGGCGACTCAAAGAGCGCCCTGTCCAATCTGAGAGGAGA
GACGCAACCGGAGGAGGAGCAACCACAGCAGCAGACGGAGGAGGTGCTGC
CACCCAGCAGAAGCACTTTAAGCCTGCCCCTCAGTGAATCGGTGACCAAT
TCCCTGGGCAGCAACAGTCCCACGCCCACAGACGAAAGCAGCGTGCAAGA
TGAGGGGGCCAGTAATCCGGCAGCAGCTTTAATAGCTGAGGATGCAGCCC
CACCAGCAGGCACAACCACGTCCAAGAGCAAGAAAAAGAAGCGGGAGAAG
GGTGAAAGGTCAGAGAAATCGGACAAATCTGAGAAATCCGACCGGAAGAA
GAAATCTTCAGGCAAGAAGGAACGCAGCAAACGATCCAATCCCATGGAGC
AAAGCAGCGACAGCCTGGCCACCGATCTCAGTGCCGGGGCCATCGATGAG
GGCATCGCACTGGCCGACGACGATGACAACCAAGCGGCGGAATGGTCCAA
GTTGCGATGCACCAGCGAGGCGGCCGAGATTGTGGCGGAGCGGGAGGCTC
GACGGAACAAGGGACGTTGTGCGGATTATCCGGGACTCGCCTTTGGCAGA
TCCATCTTCAGTTCGGACACCATGATGAAGTTCAACATCATCCGCAACGA
GCTGCACAACATCATGAACACACAACTCAAACGGGCCGAATCCGAGGTTG
CCGCTCTGAACCGTCGCATCCAGTTGCTCGAAGAAGACTTGGAGCGCTCT
GAGGAGCGTCTGGGCTCCGCCACAGCCAAGCTGTCGGAAGCCTCTCAGGC
CGCCGATGAGAGCGAACGTGCTCGCAAAATTCTTGAGAACCGCGCCCTTG
CCGATGAAGAACGCATGGACGCTCTCGAGAATCAGCTGAAGGAAGCGCGT
TTCCTTGCTGAGGAGGCTGACAAGAAATACGATGAGGTTGCCCGTAAATT
GGCCATGGTTGAAGCCGATTTGGAACGTGCCGAAGAGCGTGCCGAGCAGG
GTGAAAACAAAATTGTGGAGCTTGAGGAGGAGCTGCGCGTGGTTGGCAAC
AACCTGAAGTCCCTGGAAGTCTCTGAGGAGAAGGCCAACCAACGTGAGGA
GGAGTACAAGAACCAGATCAAGACCCTCAACACCCGTCTAAAGGAGGCTG
AGGCTCGTGCTGAGTTCGCTGAACGCTCCGTTCAGAAATTGCAGAAGGAA
GTCGACAGGCTCGAAGACGACCTCGTCCTGGAGAAGGAGCGCTACAAGGA
CATCGGAGACGATCTCGACACCGCCTTCGTCGAGCTCATCCTCAAGGAAG
CAAGCTTTCTAGACCAT
BO32561.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:12:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tm1-RE | 2136 | CG4898-PE | 1..2133 | 17..2149 | 10665 | 100 | Plus |
Tm1-RH | 2037 | CG4898-PH | 368..1808 | 348..1788 | 7205 | 100 | Plus |
Tm1-RC | 1326 | CG4898-PC | 1..1097 | 692..1788 | 5485 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:12:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tm1-RE | 2531 | CG4898-RE | 88..2223 | 14..2149 | 10680 | 100 | Plus |
Tm1-RC | 2651 | CG4898-RC | 240..1682 | 346..1788 | 7215 | 100 | Plus |
Tm1-RH | 3054 | CG4898-RH | 645..2085 | 348..1788 | 7205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:12:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15288251..15289440 | 346..1535 | 5950 | 100 | Plus |
3R | 32079331 | 3R | 15295112..15295246 | 1534..1668 | 675 | 100 | Plus |
3R | 32079331 | 3R | 15285227..15285355 | 129..257 | 645 | 100 | Plus |
3R | 32079331 | 3R | 15296590..15296710 | 1668..1788 | 605 | 100 | Plus |
3R | 32079331 | 3R | 15284646..15284763 | 14..131 | 590 | 100 | Plus |
3R | 32079331 | 3R | 15286474..15286564 | 257..347 | 455 | 100 | Plus |
3R | 32079331 | 3R | 15307588..15307672 | 2065..2149 | 425 | 100 | Plus |
3R | 32079331 | 3R | 15300747..15300823 | 1858..1934 | 385 | 100 | Plus |
3R | 32079331 | 3R | 15299275..15299347 | 1785..1857 | 365 | 100 | Plus |
3R | 32079331 | 3R | 15303151..15303222 | 1995..2066 | 360 | 100 | Plus |
3R | 32079331 | 3R | 15301009..15301074 | 1932..1997 | 330 | 100 | Plus |
3R | 32079331 | 3R | 15313115..15313197 | 1895..1977 | 220 | 84.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 13:12:18 has no hits.
BO32561.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-18 16:23:25 Download gff for
BO32561.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tm1-RE | 109..2241 | 17..2151 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:52:05 Download gff for
BO32561.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tm1-RE | 91..2223 | 17..2151 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:23:18 Download gff for
BO32561.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tm1-RE | 91..2223 | 17..2151 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:23:18 Download gff for
BO32561.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15307590..15307672 | 2067..2151 | 97 | | Plus |
3R | 15296591..15296708 | 1669..1786 | 100 | -> | Plus |
3R | 15299277..15299347 | 1787..1857 | 100 | -> | Plus |
3R | 15300747..15300822 | 1858..1933 | 100 | -> | Plus |
3R | 15301011..15301073 | 1934..1996 | 100 | -> | Plus |
3R | 15303153..15303222 | 1997..2066 | 100 | -> | Plus |
3R | 15284649..15284762 | 17..130 | 100 | -> | Plus |
3R | 15285229..15285354 | 131..256 | 100 | -> | Plus |
3R | 15286474..15286564 | 257..347 | 100 | -> | Plus |
3R | 15288253..15289439 | 348..1534 | 100 | -> | Plus |
3R | 15295113..15295246 | 1535..1668 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:52:05 Download gff for
BO32561.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11128875..11128944 | 1997..2066 | 100 | -> | Plus |
arm_3R | 11133312..11133394 | 2067..2151 | 97 | | Plus |
arm_3R | 11110371..11110484 | 17..130 | 100 | -> | Plus |
arm_3R | 11110951..11111076 | 131..256 | 100 | -> | Plus |
arm_3R | 11112196..11112286 | 257..347 | 100 | -> | Plus |
arm_3R | 11113975..11115161 | 348..1534 | 100 | -> | Plus |
arm_3R | 11120835..11120968 | 1535..1668 | 100 | -> | Plus |
arm_3R | 11122313..11122430 | 1669..1786 | 100 | -> | Plus |
arm_3R | 11124999..11125069 | 1787..1857 | 100 | -> | Plus |
arm_3R | 11126469..11126544 | 1858..1933 | 100 | -> | Plus |
arm_3R | 11126733..11126795 | 1934..1996 | 100 | -> | Plus |
BO32561.pep Sequence
Translation from 16 to 2167
> BO32561.pep
MDAIKKKMQAMKVDKDGALERALVCEQEARDANTRAEKAEEEARQLQKKI
QTVENELDQTQEALTLVTGKLEEKNKALQNESISRTFGIVSKRSQQVKRL
ENLSLGVDPQEKTQVQPQSGKTVAKPKQRQQKQLFKSDKAKEKSSRQQRK
RAGTRSTRNPRTQSESSGLSSRWCSIEEQLNLLDDLLYYCDEEAELYLAQ
LYERFETLRRSRSSSPVSDFWSDSDMEHDDSSTSGTGSHTASNTSLVPAS
LKRRGHQHHPRFSGTRRPNVPNVQEILAALYRGDSKSALSNLRGETQPEE
EQPQQQTEEVLPPSRSTLSLPLSESVTNSLGSNSPTPTDESSVQDEGASN
PAAALIAEDAAPPAGTTTSKSKKKKREKGERSEKSDKSEKSDRKKKSSGK
KERSKRSNPMEQSSDSLATDLSAGAIDEGIALADDDDNQAAEWSKLRCTS
EAAEIVAEREARRNKGRCADYPGLAFGRSIFSSDTMMKFNIIRNELHNIM
NTQLKRAESEVAALNRRIQLLEEDLERSEERLGSATAKLSEASQAADESE
RARKILENRALADEERMDALENQLKEARFLAEEADKKYDEVARKLAMVEA
DLERAEERAEQGENKIVELEEELRVVGNNLKSLEVSEEKANQREEEYKNQ
IKTLNTRLKEAEARAEFAERSVQKLQKEVDRLEDDLVLEKERYKDIGDDL
DTAFVELILKEASFLDH
BO32561.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:36:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tm1-PE | 711 | CG4898-PE | 1..711 | 1..711 | 3527 | 100 | Plus |
Tm1-PH | 678 | CG4898-PH | 37..632 | 36..620 | 2420 | 84.6 | Plus |
Tm1-PC | 441 | CG4898-PC | 1..395 | 226..620 | 1828 | 93.7 | Plus |
Tm1-PI | 441 | CG4898-PI | 1..395 | 226..620 | 1828 | 93.7 | Plus |
Tm1-PO | 285 | CG4898-PO | 75..285 | 501..711 | 992 | 98.1 | Plus |