BO32709.complete Sequence
670 bp assembled on 2012-09-04
GenBank Submission: KX797457
> BO32709.complete
GAAGTTATCAGTCGACATGTTCAACAATATTTTCGGAAAGAAACCCACCG
TGAAGGAGCAGCAGCGGGAGAATGACCGATCGCTGCGCAAGGCCACCAGG
GACATCGAACGGGAGCGCAGGAAAATGGAGGAGGAGGAGCGCAAGCTGGA
GCTGGAGATCCGACGGAATGCCGCCGCTGGGAACAACGATGCCTGCCGCA
TTCTGGCCAAGCAGCTGGTGGAGATCAGGAAGCAGAAATCACGCACATAC
GCAGCAGCGGGCAAGATTCAGTCCATTGGCTACCAGAACAAGAACATGGG
CGCCAATATCGCCCTAAGCGAAGCCATGGGCACCACGGCCAAGACGATGG
GTGAAATGAATAAGGTGATGCGACCGGAGGCCATCGGGGAAACAGTGCGC
CAGTTCCAGGCGGCCAACATGAAGATGGAAATGACCGACGAGATGATCAA
CGACACGCTGGACGACATGCTGAATGAGTCCGGCGACGAGGAGGAGTCCA
ATGCCGTAGTCAACAAGGTGCTCGACGAGATCGGCATCGAGATCTCCGGC
AAGATGTCCAGCATCCCGGCCACGGGATCCTCAGACTTTGAGACGAGTGG
CAAGCGCACCGAGAAGGACATTGCCGATCAACTGGCCAAGCTGCGCTCCT
CTGCAAGCTTTCTAGACCAT
BO32709.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:55:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CHMP2B-RA | 639 | CG4618-PA | 1..636 | 17..652 | 3180 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:55:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CHMP2B-RA | 855 | CG4618-RA | 127..762 | 17..652 | 3180 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:55:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5139745..5140380 | 17..652 | 3180 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:55:33 has no hits.
BO32709.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-04 11:55:42 Download gff for
BO32709.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CHMP2B-RA | 78..708 | 22..654 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:48:18 Download gff for
BO32709.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CHMP2B-RA | 132..762 | 22..654 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:16:59 Download gff for
BO32709.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CHMP2B-RA | 132..762 | 22..654 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:16:59 Download gff for
BO32709.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5139750..5140380 | 22..654 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:48:18 Download gff for
BO32709.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5132850..5133480 | 22..654 | 99 | | Plus |
BO32709.pep Sequence
Translation from 16 to 670
> BO32709.pep
MFNNIFGKKPTVKEQQRENDRSLRKATRDIERERRKMEEEERKLELEIRR
NAAAGNNDACRILAKQLVEIRKQKSRTYAAAGKIQSIGYQNKNMGANIAL
SEAMGTTAKTMGEMNKVMRPEAIGETVRQFQAANMKMEMTDEMINDTLDD
MLNESGDEEESNAVVNKVLDEIGIEISGKMSSIPATGSSDFETSGKRTEK
DIADQLAKLRSSASFLDH
BO32709.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:27:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CHMP2B-PA | 212 | CG4618-PA | 1..212 | 1..212 | 1051 | 100 | Plus |
| Vps2-PA | 256 | CG14542-PA | 4..199 | 5..200 | 349 | 34.7 | Plus |
| Vps24-PA | 223 | CG9779-PA | 3..206 | 5..205 | 227 | 28 | Plus |
| Chmp1-PB | 203 | CG4108-PB | 12..202 | 22..212 | 160 | 19.9 | Plus |
| Chmp1-PA | 203 | CG4108-PA | 12..202 | 22..212 | 160 | 19.9 | Plus |
