BO32713.complete Sequence
2422 bp assembled on 2012-07-27
GenBank Submission: KX799130
> BO32713.complete
GAAGTTATCAGTCGACATGGACCTGAACACTCTGCTGCAGCGCGCCCAGA
ACCTGAACAATGACGCGAAGGCAGAGTGCGAGCTGCCCGCCGTGGAGCGG
ACGCTTCAGCAGGTCCTGCGGGCCACCACGGAGCTCCACTCCCGCGTCAC
CCAAACCGGCTGCAAAGAGATCCAGGCTCACATACTGCTGGGCTCCAAGG
GCGTGGACCTGCCCAAGCTGAACCAGAAGCTGGAGGCGCTGAGTGCCCGG
AAAACCTTCGAGCCGCTAGACGTAAAGGCGGACACGGATGTGCGCACATT
CCTGAAGAACGAACGCGAGAATGCAATTCTCTCGGTGATCGAGGACACGA
AAAAGAATATCAGCGACTCTGCGAACAAGCAGAGGTGGGCCAGTATGAAC
AAAGTATGGAACGAGGAGAAGACCCGCCTGCTGGACGCCTTAATTGCGCC
GTCACAGAACTTTATCGACCTACAACGGCTGCCGGAACCCACCATCGTAA
ATCCGCTTTGTCAGCCACGTTCCTGCCTCGATCCGCTGGAACTAGTGTAT
GCGCAAGAGTTGCGGCATTACAATGAACTGCTGCTTAAGAGCAGCCATCG
ACCCAATCTCGTCCAAAAGTTCGCTCATCTGTCCCAGAGCTTCGGAGATT
GCCGGCTTACGGACATGTGGACCCTGCTGGCTTGCGTCACCCAAATCAGC
GAGCCGCTGCGCAGTGACCCCATCAAGAGCCGACAGCAAAGACCGGAGTT
TGTTACCTATGCTAAATCGTACCTAGAACGGCGCTATCGTGTGTTCATGT
GCTCCCAAGTCGGTGGATCCTATGCCAACAACAGCTATCAGTTGGTTGTG
GCCTATGTAAACCACCGGTTCAGAGCACAGCAGACCATCGGACTTGTGGA
CACCGTCCGCGAAATACCCTTATGGCCGCTGGTTTACTACGGATTGCGCT
GCGGAGCGGTTAAGGTGGCGGTTGAGTTCCTGCGCGAAGCGGGCAGTAGC
CACGATGAGTTTGCCCAGCTCGTTGCAGATCGCAATGCCGGCGAAACCAA
TTCCAAAATAGAAAACCAACTGCGACTGCAGTACGCCAACAAAATACGCA
ACTCCACCGATGCCTATAAGAAGGCCGTTTACTGCATCCTTTTGGGCTGC
GATGTCAATGAAGTACACGGAGAAGTGGCCAAGACCATAGACGACTTCCT
TTGGATGCGGCTGGCCATGATACAGCCCGGTGACGCTGACAACTATGGTA
AACTGCAGTCAATGATTTTGGAACAGTATGGTGAAAAGTACTTCAATGCT
AGGCAGCAGCCGTATCTCTACTTCGAGACCCTTGCATTAACCGGCCAGTT
TGAAGCCGCCATCGAGTTCCTGGCGCGCCAAGATGAAAATCGGGCACATG
CAGTTCACATGGCCATAGCGCTGTTTGAGCTAGGACTTCTAGGCAGTGCG
CGCAGTGTGTCGCAGCCCCTGCTTTCGATCGATATTAAAGATCCGCAGCC
ACTGAGGCGCTTGAACCTAACTCGGCTTATCCGACAGTATGTGCAGCGAT
TTGAGCGGACAGACACCTCGGAGGCGCTGCATTACTACTACACACTGCGC
TGTCTGAAGGATTCCAAGGGCCGGAACATGTTTATGGCCTGTGTGTGCGA
TCTTGTGGTGGACAGCGGAGTCTTTGATACCACCATTTTCGATCTGATAT
TCGGCAAGCGGCAGTCGAGTGACCAAAACGATGTTAACAGTGGACTCTTC
CGCCAGTTCGAATGCCCGGAGTTCGACACGCGCACCATGGCCGCTCAGGT
GGGCGACGAACTGGCTGCGCTGGGTAACTTTGAGATGTCGGCGCGGCTGT
ACGAAATGGCGGGCAAGTACAACCTGGCCGTGAAGCACATCTGCATTCTG
ATGGCCCAGGTGGTGCACCTGCCCACGCTAGGTGGATCGTTAAGGGAACG
CCTTGGCCAAGACGCTCAGAGATTCAACCAGCTGCTGGCTAGCGACAGCA
TCGATGTGGAACCCAAGATGAAGAGCAGCTTTGTGCTGCTGCAGGATCTG
CTTATCTTCTTCAACTTCTATCATGACGGAAAATTTAATGCAGCGTTGGA
TCTGCTCAGGCAAACCCAGTTGGTGCCCAATACGTTGGACGATGTCGATG
TTGTACTGGGCAATGTGAAGCAACTTAGCGGCGAGGTAATCAAGGTCCTG
CCCGACGTTATAGTGGCCGCCATGGAGATCGCCCAGAAGCAGTACAAGCA
GCTGAAGGCAGGATCAGGCAGCTCGCTGGAACAGACCCAGATGCAGCAAC
TCCGGCAGCGAGCCAAAGCCCTGTCCAACATGGCAGCAACTATGCCGTAT
CGCCTGCCCAACGACACGAACAAGCGACTGATTGAACTCGAACTGGATAT
GCACGCAAGCTTTCTAGACCAT
BO32713.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:49:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nup93-2-RA | 2391 | CG7262-PA | 1..2388 | 17..2404 | 11940 | 100 | Plus |
| Nup93-1-RA | 2472 | CG11092-PA | 94..335 | 110..351 | 400 | 77.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:49:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nup93-2-RA | 2497 | CG7262-RA | 86..2473 | 17..2404 | 11940 | 100 | Plus |
| CG14860-RB | 1603 | CG14860-RB | 884..1549 | 2404..1739 | 3330 | 100 | Minus |
| Nup93-1-RA | 2786 | CG11092-RA | 195..436 | 110..351 | 400 | 77.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:49:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14896453..14897834 | 1740..359 | 6910 | 100 | Minus |
| 3R | 32079331 | 3R | 14895727..14896392 | 2404..1739 | 3330 | 100 | Minus |
| 3R | 32079331 | 3R | 14897888..14898068 | 358..178 | 905 | 100 | Minus |
| 3R | 32079331 | 3R | 14898127..14898287 | 177..17 | 805 | 100 | Minus |
| X | 23542271 | X | 13823152..13823324 | 179..351 | 310 | 78.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 11:49:35 has no hits.
BO32713.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-27 17:05:57 Download gff for
BO32713.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7262-RA | 82..2469 | 17..2406 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:14 Download gff for
BO32713.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup93-2-RA | 82..2469 | 17..2406 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:52:03 Download gff for
BO32713.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup93-2-RA | 86..2473 | 17..2406 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:52:03 Download gff for
BO32713.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14898127..14898287 | 17..177 | 100 | | Minus |
| 3R | 14896453..14897834 | 359..1740 | 100 | <- | Minus |
| 3R | 14897888..14898068 | 178..358 | 100 | <- | Minus |
| 3R | 14895725..14896390 | 1741..2406 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:14 Download gff for
BO32713.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10721447..10722112 | 1741..2406 | 99 | <- | Minus |
| arm_3R | 10722175..10723556 | 359..1740 | 100 | <- | Minus |
| arm_3R | 10723610..10723790 | 178..358 | 100 | <- | Minus |
| arm_3R | 10723849..10724009 | 17..177 | 100 | | Minus |
BO32713.pep Sequence
Translation from 16 to 2422
> BO32713.pep
MDLNTLLQRAQNLNNDAKAECELPAVERTLQQVLRATTELHSRVTQTGCK
EIQAHILLGSKGVDLPKLNQKLEALSARKTFEPLDVKADTDVRTFLKNER
ENAILSVIEDTKKNISDSANKQRWASMNKVWNEEKTRLLDALIAPSQNFI
DLQRLPEPTIVNPLCQPRSCLDPLELVYAQELRHYNELLLKSSHRPNLVQ
KFAHLSQSFGDCRLTDMWTLLACVTQISEPLRSDPIKSRQQRPEFVTYAK
SYLERRYRVFMCSQVGGSYANNSYQLVVAYVNHRFRAQQTIGLVDTVREI
PLWPLVYYGLRCGAVKVAVEFLREAGSSHDEFAQLVADRNAGETNSKIEN
QLRLQYANKIRNSTDAYKKAVYCILLGCDVNEVHGEVAKTIDDFLWMRLA
MIQPGDADNYGKLQSMILEQYGEKYFNARQQPYLYFETLALTGQFEAAIE
FLARQDENRAHAVHMAIALFELGLLGSARSVSQPLLSIDIKDPQPLRRLN
LTRLIRQYVQRFERTDTSEALHYYYTLRCLKDSKGRNMFMACVCDLVVDS
GVFDTTIFDLIFGKRQSSDQNDVNSGLFRQFECPEFDTRTMAAQVGDELA
ALGNFEMSARLYEMAGKYNLAVKHICILMAQVVHLPTLGGSLRERLGQDA
QRFNQLLASDSIDVEPKMKSSFVLLQDLLIFFNFYHDGKFNAALDLLRQT
QLVPNTLDDVDVVLGNVKQLSGEVIKVLPDVIVAAMEIAQKQYKQLKAGS
GSSLEQTQMQQLRQRAKALSNMAATMPYRLPNDTNKRLIELELDMHASFL
DH
BO32713.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:12:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nup93-2-PA | 796 | CG7262-PA | 1..796 | 1..796 | 4078 | 100 | Plus |
| Nup93-1-PA | 823 | CG11092-PA | 1..823 | 1..796 | 1725 | 44.5 | Plus |
