BO32723.complete Sequence
3853 bp assembled on 2012-07-27
GenBank Submission: KX799066
> BO32723.complete
GAAGTTATCAGTCGACATGGCTGGAAGAATTACAATCAACGGCACCAGCC
ACGAAGTCAACCTGTCTGCCCTGCCGGCGGATATCTCGCTGAACACTTTC
ATCCGAGAGTATGCCGGATTAACGGGCACGAAGTTCATGTGCCAGGAGGG
CGGATGCGGCGTCTGCGTCTGCACCCTGACTGGGATTCATCCGGAGACCG
GAGAGCTGCGCACCTGGGCGGTCAACTCGTGCCTCACGCTGCTGAATACG
TGCTTGGGCCTGGAGGTGACCACTTCGGAGGGATTGGGCAACAAGCGGGT
CGGCTACCATGCCATCCAGCAGCGACTGGCCAAGATGAACGGCACCCAGT
GCGGCTACTGCTCGCCGGGAATCGTGATGAACATGTACGGCCTGCTGAAG
TCCAAGGGCGGCAAGGTCACAATGGAGGAGGTGGAGAACTCCTTTGGAGG
CAACATCTGTCGCTGCACTGGCTATCGTCCCATTCTTGACGCCATGAAAT
CCTTTGCCGTGGACAGCAACATCCAGGTACCAGCTGAGTGCATTGACATT
GAAGACCTGAGCACCAAAAAGTGTCCCAAGACCGGCCAAACCTGCTCCGG
CAGCTGCAAGAAGCAGCAGCCCAAGGGCAGCCAACTGTATCCGGATGGCA
GCCGCTGGAGTTGGCCAGTGAGTCTGGGTGACCTCTTTGCCGCTCTGCAG
GGAGCAGTCAAAGAGAAGCTGCCCTACATGCTGGTGGCTGGAAATACGGC
CCACGGCGTCTACAGACGTAGTCCGGACATAAAGGCATTCATCGATGTTT
CCGGCTTGGCGGAGCTCAAGGGTCATAAGCTGAGCGCAGATAACTCATCC
CTAACTCTCGGTGGAAATCTGAGTCTCAGTGAAACCATGGAGCTGTGTCG
CCAGTTGGAGAACACGAAGGGCTTCGAGTATTTGTCTCAGGTGTGGCAAC
ACCTCGATTGGATCGCTAATGTTCCAGTGCGCAATGCTGGCACCTTGGCG
GGCAATCTGTCCATCAAGCATGCCCACCCGGAGTTCCCCTCGGATGTGTT
CATCGTCCTGGAGGCCCTAGATGCTCAAGTGATTGTCCAGGAGGCGGTGG
ACAAGCAGCAGACTGTCAGCCTGGCCAGCTATCTGGGCTCTTCCATGGAG
GGAAAGATTATCCGTGGTCTGGTGCTGCGCGCGTATCCCAAGGAGCGGTT
TGCATTTGACTCCTACAAGATTATGCCCCGTGCGCAGAATGCCCATGCCT
ATGTGAACGCTGCTTTCCTCGTGGAGTTCACGGCAGACGCCAAGGTGAAA
TCAGCTCGCATTTGCTTCGGTGGCATCCATCCCGAATTCGTGCATGCCAC
AGCGATTGAAAACTTGATTCGGGACAAGAATCCCTTCGAGAACGGATTGG
TGGAGAAGGCCTTCGGGCAGCTGTCCACCCTGCTTCAGCCAGATGCCGTT
CTTCCGGATGCTTCACCCGTCTACCGACGCAAGTTGGCCTGTGGTCTTTT
CTACAAGTTCCTCTTGAAGATAGCGGCTCAGCGAAAGCAGGGTTTGGGCA
GTCGATTCGTCACAGGCGGTTCTCTCCTGAAACGTCCCGTTTCAAGTGGC
CAGCAGAGTTTTGAGACCTTCCAGGAGCACTACCCGGTGACCAAGGCAAC
AGAGAAGCATGAGGGTCTGATCCAGTGCTCTGGCGAAGCCACCTACTCCA
ACGATCTGCCCACCCAGCACAACCAGTTGTGGGCTGCGTTTGTCATCGCG
AAGAAGGTGGGCGCAAAAGTCACCAAGGTGGATACGCAACCGGCTCTGGA
TCTACCCGGGGTGGTGGCGTACCTCGATGCCAAGGACATTCCGGGACCGA
ACTACGTTGGGCCCAAAATCCGGGACCAGTTTTTCTTCCCCAAGGATGAG
GAACTATTCGCCACGGGAGAGATTAAGTTTTATGGTCAGCCCGTGGGCAT
AATCCTAGCCAACTCCAATTCGCTGGCCAATCGGGCAGCAGAGCTGGTGA
AACTGACCTACGAGGGCGGAGCGGAAGAAATACTACCCTCCTTGAAGGCA
GTGCTAGACAAAGTTGGATCCGAAGCTGGCAATAACAAGCGGTTGGAGCA
GCCCATCAAGTCCACCATCGATGTCCTCCAGCTGGAGGAACCCTTTGATG
TGAGCTCCTCCGGCCAACTGGATATGGGACTCCAGTACCACTACTACATG
GAACCGCAGACAACAGTGGTTCTGCCCTTCGAGGGCGGCTTGCAGGTGTA
CGCTGCCACCCAGTGGATGGACCTAACCCAGGACACCATCGCCAATGTGC
TGAACCTCAAGTCCAACGATGTTCAGGTAAAGACGCGTCGTATTGGAGGA
GGATATGGAGGCAAAGCCACACGATGCAATCTGGCTGCTGCCGCTGCTGC
TCTGGCTGCTCACAAGCTGAACAGACCCATTAGATTCGTCCAGTCCTTGG
AGTCCATCATGACCAGTCTGGGCAAACGCTGGGCCTTCCATTGCGACTAC
GACTTTTTCGTTCAGAAATCCGGAAAGATCTCCGGTATCGTTAGTCGATT
CTACGAGGATGCTGGATATCTGGCCAACGAATCACCCATTGGTCATACCG
TTTTGCTATCCAAGAATTGCTACGAGTTCAGCGACAACTACAAACTGGAT
GGCTACCTAGTCTGCACGGATTCGCCATCGAATACTCCGTGCCGTGCTCC
TGGCTCCGTGGAGGGTATTGCAATGATGGAAAATATCATCGAGCACATCG
CCTTCGAGACTGGAGTGGATCCGGCTGACGTGCGATTCGCCAATTTGCTA
CCCGCCCATAAAATGGGCGACATGATGCCGCGATTCCTGGAAAGTACCAA
GTACAGGGAACGGAAGGCGGAGGCTATAGCCCACAACAAGGAGAACCGCT
GGCACAAGCGCGGATTGGGTTTGTGTATCATGGAGTACCAGATCGGTTAC
TTCGGACAATACCCCGCTACGGTGGCTATCTACCACAGCGATGGCACCGT
GGTGGTTTCCCATGGAGGCATTGAAATGGGTCAAGGCATGAACACCAAGA
TCTCGCAGGTGGCGGCCCACACCCTAGGCATTCCGATGGAACAGGTACGC
ATCGAGGCCAGCGATACCATCAACGGAGCCAACTCCATGGTCACTGGAGG
GGCTGTGGGCAGTGAAACCCTCTGCTTTGCAGTCCGCAAGGCGTGCGAGA
CTCTAAATGAACGATTGAAGCCCGTGCGCGAGGAGGTGAAGCCCGAGAAT
TGGCAGGACCTCATCCAGGAGGCCTACAACCGCAAGATCAATCTGATCGC
CAGCGATCAGTGCAAGCAGGGCGACATGGATCCGTACTCCGTATGCGGTC
TCTGCCTCACCGAGGTGGAGTTGGATGTCCTCACCGGTAACTACATTGTG
GGCCGAGTGGACATCCTGGAGGACACTGGTGAGAGTCTGAATCCCAATGT
GGATATTGGCCAGATCGAGGGTGCATTCATGATGGGCTTGGGCTACTGGA
CCAGCGAGCAAGTGATTGCGGATCCGAAGACGGGCGAGTGTCTCACGAAT
CGTACCTGGACGTATAAGCCACCAGGAGCTAAGGACATACCCACTGATCT
GCGCATCGAGCTGCTCCCCAAGAGTCCCAACAAGGCGGGCTTCATGAGAT
CCAAGGCCACCGGAGAGCCAGCCATCTGTTTGTCCATCGCAGTCGCCTTT
GCCCTGCAGCAGGCCCTGCAATCAGCTCGCGATGACGCCGGCGTGCCCAA
GTCTTGGGTGACCCTCACCGCCCCGATGACCCCCGAGCACCTGGTCCTCC
ACTCGGGCACCGAGCCCAGCCAGTTCAAGCTGAACGCAAGCTTTCTAGAC
CAT
BO32723.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:49:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AOX1-RA | 3822 | CG18522-PA | 1..3819 | 17..3835 | 19095 | 100 | Plus |
| AOX3-RA | 3765 | CG6045-PA | 174..561 | 208..595 | 710 | 78.9 | Plus |
| AOX4-RA | 3771 | CG18516-PA | 176..484 | 210..518 | 630 | 80.3 | Plus |
| AOX3-RA | 3765 | CG6045-PA | 2890..3131 | 2960..3201 | 325 | 75.6 | Plus |
| AOX3-RA | 3765 | CG6045-PA | 1152..1304 | 1207..1359 | 300 | 79.7 | Plus |
| AOX3-RA | 3765 | CG6045-PA | 54..156 | 70..172 | 230 | 81.6 | Plus |
| AOX3-RA | 3765 | CG6045-PA | 2619..2687 | 2689..2757 | 195 | 85.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:49:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AOX1-RA | 4228 | CG18522-RA | 218..4036 | 17..3835 | 19095 | 100 | Plus |
| AOX3-RA | 4163 | CG6045-RA | 450..837 | 208..595 | 710 | 78.9 | Plus |
| AOX4-RA | 3832 | CG18516-RA | 237..545 | 210..518 | 630 | 80.3 | Plus |
| AOX3-RA | 4163 | CG6045-RA | 3166..3407 | 2960..3201 | 325 | 75.6 | Plus |
| AOX3-RA | 4163 | CG6045-RA | 1428..1580 | 1207..1359 | 300 | 79.7 | Plus |
| AOX3-RA | 4163 | CG6045-RA | 330..432 | 70..172 | 230 | 81.6 | Plus |
| AOX3-RA | 4163 | CG6045-RA | 2895..2963 | 2689..2757 | 195 | 85.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:49:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15533246..15535064 | 3036..1218 | 9095 | 100 | Minus |
| 3R | 32079331 | 3R | 15535627..15536558 | 986..55 | 4660 | 100 | Minus |
| 3R | 32079331 | 3R | 15532568..15533190 | 3656..3034 | 3115 | 100 | Minus |
| 3R | 32079331 | 3R | 15535285..15535518 | 1219..986 | 1170 | 100 | Minus |
| 3R | 32079331 | 3R | 15532329..15532508 | 3835..3656 | 900 | 100 | Minus |
| 3R | 32079331 | 3R | 15546304..15546670 | 595..229 | 650 | 78.5 | Minus |
| 3R | 32079331 | 3R | 15552140..15552356 | 518..302 | 605 | 85.3 | Minus |
| 3R | 32079331 | 3R | 15541759..15542001 | 520..278 | 420 | 78.2 | Minus |
| 3R | 32079331 | 3R | 15545449..15545590 | 1359..1218 | 275 | 79.6 | Minus |
| 3R | 32079331 | 3R | 15543504..15543593 | 3201..3112 | 240 | 84.4 | Minus |
| 3R | 32079331 | 3R | 15546768..15546870 | 172..70 | 230 | 81.6 | Minus |
| 3R | 32079331 | 3R | 15549766..15549834 | 2757..2689 | 210 | 87 | Minus |
| 3R | 32079331 | 3R | 15537036..15537075 | 56..17 | 200 | 100 | Minus |
| 3R | 32079331 | 3R | 15538009..15538276 | 3669..3402 | 200 | 71.6 | Minus |
| 3R | 32079331 | 3R | 15538542..15538682 | 3139..2999 | 195 | 75.9 | Minus |
| 3R | 32079331 | 3R | 15544007..15544075 | 2757..2689 | 195 | 85.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 11:49:29 has no hits.
BO32723.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-27 17:05:56 Download gff for
BO32723.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18522-RA | 214..4032 | 17..3837 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:12 Download gff for
BO32723.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18522-RA | 218..4036 | 17..3837 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:52:01 Download gff for
BO32723.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AOX1-RA | 218..4036 | 17..3837 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:52:01 Download gff for
BO32723.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15532327..15532507 | 3657..3837 | 98 | <- | Minus |
| 3R | 15532568..15533188 | 3036..3656 | 100 | <- | Minus |
| 3R | 15533247..15535062 | 1220..3035 | 100 | <- | Minus |
| 3R | 15535285..15535518 | 986..1219 | 100 | <- | Minus |
| 3R | 15535628..15536556 | 57..985 | 100 | <- | Minus |
| 3R | 15537036..15537075 | 17..56 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:12 Download gff for
BO32723.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11361007..11361240 | 986..1219 | 100 | <- | Minus |
| arm_3R | 11358049..11358229 | 3657..3837 | 98 | <- | Minus |
| arm_3R | 11358290..11358910 | 3036..3656 | 100 | <- | Minus |
| arm_3R | 11358969..11360784 | 1220..3035 | 100 | <- | Minus |
| arm_3R | 11361350..11362278 | 57..985 | 100 | <- | Minus |
| arm_3R | 11362758..11362797 | 17..56 | 100 | | Minus |
BO32723.pep Sequence
Translation from 16 to 3853
> BO32723.pep
MAGRITINGTSHEVNLSALPADISLNTFIREYAGLTGTKFMCQEGGCGVC
VCTLTGIHPETGELRTWAVNSCLTLLNTCLGLEVTTSEGLGNKRVGYHAI
QQRLAKMNGTQCGYCSPGIVMNMYGLLKSKGGKVTMEEVENSFGGNICRC
TGYRPILDAMKSFAVDSNIQVPAECIDIEDLSTKKCPKTGQTCSGSCKKQ
QPKGSQLYPDGSRWSWPVSLGDLFAALQGAVKEKLPYMLVAGNTAHGVYR
RSPDIKAFIDVSGLAELKGHKLSADNSSLTLGGNLSLSETMELCRQLENT
KGFEYLSQVWQHLDWIANVPVRNAGTLAGNLSIKHAHPEFPSDVFIVLEA
LDAQVIVQEAVDKQQTVSLASYLGSSMEGKIIRGLVLRAYPKERFAFDSY
KIMPRAQNAHAYVNAAFLVEFTADAKVKSARICFGGIHPEFVHATAIENL
IRDKNPFENGLVEKAFGQLSTLLQPDAVLPDASPVYRRKLACGLFYKFLL
KIAAQRKQGLGSRFVTGGSLLKRPVSSGQQSFETFQEHYPVTKATEKHEG
LIQCSGEATYSNDLPTQHNQLWAAFVIAKKVGAKVTKVDTQPALDLPGVV
AYLDAKDIPGPNYVGPKIRDQFFFPKDEELFATGEIKFYGQPVGIILANS
NSLANRAAELVKLTYEGGAEEILPSLKAVLDKVGSEAGNNKRLEQPIKST
IDVLQLEEPFDVSSSGQLDMGLQYHYYMEPQTTVVLPFEGGLQVYAATQW
MDLTQDTIANVLNLKSNDVQVKTRRIGGGYGGKATRCNLAAAAAALAAHK
LNRPIRFVQSLESIMTSLGKRWAFHCDYDFFVQKSGKISGIVSRFYEDAG
YLANESPIGHTVLLSKNCYEFSDNYKLDGYLVCTDSPSNTPCRAPGSVEG
IAMMENIIEHIAFETGVDPADVRFANLLPAHKMGDMMPRFLESTKYRERK
AEAIAHNKENRWHKRGLGLCIMEYQIGYFGQYPATVAIYHSDGTVVVSHG
GIEMGQGMNTKISQVAAHTLGIPMEQVRIEASDTINGANSMVTGGAVGSE
TLCFAVRKACETLNERLKPVREEVKPENWQDLIQEAYNRKINLIASDQCK
QGDMDPYSVCGLCLTEVELDVLTGNYIVGRVDILEDTGESLNPNVDIGQI
EGAFMMGLGYWTSEQVIADPKTGECLTNRTWTYKPPGAKDIPTDLRIELL
PKSPNKAGFMRSKATGEPAICLSIAVAFALQQALQSARDDAGVPKSWVTL
TAPMTPEHLVLHSGTEPSQFKLNASFLDH
BO32723.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:12:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AOX1-PA | 1273 | CG18522-PA | 1..1273 | 1..1273 | 6662 | 100 | Plus |
| AOX3-PA | 1254 | CG6045-PA | 1..1253 | 1..1272 | 3884 | 59.5 | Plus |
| AOX4-PA | 1256 | CG18516-PA | 1..1255 | 1..1272 | 3727 | 56.7 | Plus |
| AOX2-PC | 1264 | CG18519-PC | 1..1264 | 1..1272 | 3414 | 52 | Plus |
| ry-PA | 1335 | CG7642-PA | 23..1304 | 22..1255 | 1400 | 31.6 | Plus |
