BO32726.complete Sequence
2512 bp assembled on 2012-07-27
GenBank Submission: KX797300
> BO32726.complete
GAAGTTATCAGTCGACATGGACAAGTTTCTGTTGCGCAATCCCACGTGGA
AGACGAAGACGTACGGATCGGTCGTGGCCAGTTCCGCCGCAGCTGCCAAG
AAAACAGCGGCGTCATCGACCCGCCGACCGTTGCACGATTCAAATCTGGG
CGACTTCAGGTCCAAAGCAGCGGCACCGTCTCCCAAATCTCTATCCCAGG
CCCCGGCAGATGACCAGGCGGCCAGGGATCGGCTGATGCTCAAGCCGGCA
TTAGCCGTCTCCAAAGCGATCAGCCAGCACCGCTCCGAGTTCCACCAGGA
CGAGAACGAGGCGGGAGCAGAAGGATCTGCAGCAAAACCAGATCCACCCA
TCGGAGCAGCCACGCCAACCAGGCAGGAAGGACACTGGGCCCGACTGCAG
CAAGATCTCAACAGCCCCAACGCTGCACTCCGATTACGCGCCATTCGTGC
ATTAAAAAGCCCCACCAAGTCGGCATACAATACCTTCGATGTGCCTTTAG
CCGAACAAAGCATCATCACGATGGAAGAACGCAATCCCCAGGAGCCGCCC
TCCCTCCCCGAGTTGCTCAAGGACATAGTCGTATATGTGGAGGTGCGAAC
TGGAAACGACAATCGCTCTGAGGGCGTAAAATCAATTATTGCCAAGATGG
GAGCCCAGGTCAAAGATCGCCTAACGCGAACCACCACACACGTTGTCTTC
AAGGATGGCCTGCTCTCCACCTATAAAAAGGCCACCGAGTGGAATATACC
AGTCGTTTCCATTCTGTGGATTGAAGCTTGCAAGGTGCAGCTGAAAATAT
GCGATCCCAAGCAATTTCCAATCAGCAATATACGCATGTACGAGTATCCC
GAGCTCTTTGGCAAAATGCCGCGCGTTAAGTTCATGCAGCCGGACTCCGA
GTTGAATCAGCGACCCCGCAAACGCCAAGGAACACCCACATCCTCCAAGG
ACAACGAGCCAGGATCGACTAACAAACGAGCCCAGACCGGAACTCCAACA
ACCACCACACCAAAGAATGACATCAGCCGCTTTTTCAGAGCCATTAACCA
CAATAAGCCATCGGATGATGAGGCAATAGAGTCGCCAGCCACCAAACTAC
TCAACAGGATAAGCAGTGGATGCTACACTCCTTTGCCGGCCGGTGGCACT
CCCCAGCTGATGGGAACCAATGGTAGTGGAGATGCGGTGGCCCAAAAGGT
GCAGGCCCAAAAGAGTTTGCAATTTGGAGAGCAGACGGACAGCAATACCC
CCCAGGCAAAACCATCGAGCACTTCACGCCCACGGCGGAGCACAGTGGAT
CCACCGCCGGTAATGACGCCACCAGTGCGCACCACTCGCCGTCGTAGCTG
CGTAGCTGAAATCAGCAGTCCTGCTGCAACGGATACGAGAATGACCCGCC
GCAGAAGTTCGCTACTCACTTCCACGGTTATTCACGAGGCCGATCCAACT
CAAACCGCAGTTGCGGAACCCAGAATGACTCGTCGCAGGAGCTCATTGCT
AGGGATTGCCAAACAAGCAGAAGAAACCGCCCAAAGGCAAACCATTCAAC
CCATAACGGAGGAGCTGGCTCCCGTTGAAGAGAACAGGAATTCTATAATT
ATGGCCGAGACCAATATAATCAACAACACCAATTGTCTTGAGCAATCAAT
TGAGATAACTGCCGTGGAGGCAGAAGCTTCTTTTAAAGCGGACAGACGTG
GCACGCTCTATGCCTCAGAATTGATGGACATAAGTTCTCCTCGTCGGCGC
AGCGTGGCCAAGTCGAGCTTAGAGTTGAGGCAGGAAAACTTAGCTCCGAG
GGCCAGGCAGTCGCTCAGCAACGTGACTACTCAGACGTCCTTTTTAGACG
TTGAGCAGCAAGTGACGCCGCTGTTCAGCTCCACACGACTGCCCACAGGC
CAGACTACAGGAAATCGCAGGCGAACTATTTTTAACATGGACATGGACGT
GATCAACGAGAGCATCGAAAGAATGAACCAGTCACATCGAATGTCCCTAG
CCTTGGCCAATAAGGCGGAGCTGGGCGAGTCTTGCCAAGTCCATGAACAA
GAGCCACCGCAAGCAGAGCCAGTCCCATCACAAGAGCCCAAAAGGCGGCG
CCTTTTCAATCCAAACGACGAGGTGGTCATTTCGCCAGCGATGAGCAACA
GAAAGAGTCGTTTGAGCATAACCGGATCCGGATCATCGAGCTCGGTGCAG
AAGCGTCGACGCTCGCTAGCCACTCCCGCAAAGTCTTCATCATCAGAGTT
GTGTGCCACGACTCCTCTTTCCAAAGCCGTCACAAACAAGGAGGCAGAAA
AGTCCAAGAGCAATACAGAAATATCTGAGGCTTCGTTGGATGCCGTTCCG
GAAGTGAAGAAATCTACATCAAACGCCGGGGAAGAGAATGAGAAACCAAA
GGGCAAATCACGTACACGGATTCGCACGCTAGTCCACACCAACATGCACC
AGGAGCAGATCAACGTCATCCGCAAGGTTGGTAATACGACGGAGGCAAGC
TTTCTAGACCAT
BO32726.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:49:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MCPH1-RB | 2481 | CG42572-PB | 1..2478 | 17..2494 | 12390 | 100 | Plus |
| MCPH1-RD | 3087 | CG42572-PD | 1..2461 | 17..2477 | 12305 | 100 | Plus |
| MCPH1-RA | 2340 | CG42572-PA | 51..2337 | 208..2494 | 11435 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:49:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MCPH1-RB | 2872 | CG42572-RB | 145..2623 | 16..2494 | 12395 | 100 | Plus |
| MCPH1-RD | 3360 | CG42572-RD | 145..2606 | 16..2477 | 12310 | 100 | Plus |
| MCPH1-RA | 2661 | CG42572-RA | 126..2412 | 208..2494 | 11435 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:49:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11897091..11898479 | 2494..1106 | 6945 | 100 | Minus |
| 2R | 25286936 | 2R | 11903165..11903413 | 456..208 | 1245 | 100 | Minus |
| 2R | 25286936 | 2R | 11902619..11902840 | 678..457 | 1110 | 100 | Minus |
| 2R | 25286936 | 2R | 11902358..11902551 | 871..678 | 970 | 100 | Minus |
| 2R | 25286936 | 2R | 11903581..11903774 | 209..16 | 970 | 100 | Minus |
| 2R | 25286936 | 2R | 11898919..11899063 | 1015..871 | 725 | 100 | Minus |
| 2R | 25286936 | 2R | 11898546..11898640 | 1108..1014 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 11:49:48 has no hits.
BO32726.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-27 17:05:58 Download gff for
BO32726.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MCPH1-RB | 152..2629 | 17..2496 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:17 Download gff for
BO32726.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MCPH1-RB | 146..2623 | 17..2496 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:52:06 Download gff for
BO32726.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MCPH1-RB | 146..2623 | 17..2496 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:52:06 Download gff for
BO32726.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11902619..11902840 | 457..678 | 100 | <- | Minus |
| 2R | 11903165..11903411 | 210..456 | 100 | <- | Minus |
| 2R | 11903581..11903773 | 17..209 | 100 | | Minus |
| 2R | 11897087..11898477 | 1108..2496 | 99 | <- | Minus |
| 2R | 11898547..11898638 | 1016..1107 | 100 | <- | Minus |
| 2R | 11898919..11899062 | 872..1015 | 100 | <- | Minus |
| 2R | 11902358..11902550 | 679..871 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:17 Download gff for
BO32726.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7791086..7791278 | 17..209 | 100 | | Minus |
| arm_2R | 7790124..7790345 | 457..678 | 100 | <- | Minus |
| arm_2R | 7790670..7790916 | 210..456 | 100 | <- | Minus |
| arm_2R | 7784592..7785982 | 1108..2496 | 99 | <- | Minus |
| arm_2R | 7786052..7786143 | 1016..1107 | 100 | <- | Minus |
| arm_2R | 7786424..7786567 | 872..1015 | 100 | <- | Minus |
| arm_2R | 7789863..7790055 | 679..871 | 100 | <- | Minus |
BO32726.pep Sequence
Translation from 16 to 2512
> BO32726.pep
MDKFLLRNPTWKTKTYGSVVASSAAAAKKTAASSTRRPLHDSNLGDFRSK
AAAPSPKSLSQAPADDQAARDRLMLKPALAVSKAISQHRSEFHQDENEAG
AEGSAAKPDPPIGAATPTRQEGHWARLQQDLNSPNAALRLRAIRALKSPT
KSAYNTFDVPLAEQSIITMEERNPQEPPSLPELLKDIVVYVEVRTGNDNR
SEGVKSIIAKMGAQVKDRLTRTTTHVVFKDGLLSTYKKATEWNIPVVSIL
WIEACKVQLKICDPKQFPISNIRMYEYPELFGKMPRVKFMQPDSELNQRP
RKRQGTPTSSKDNEPGSTNKRAQTGTPTTTTPKNDISRFFRAINHNKPSD
DEAIESPATKLLNRISSGCYTPLPAGGTPQLMGTNGSGDAVAQKVQAQKS
LQFGEQTDSNTPQAKPSSTSRPRRSTVDPPPVMTPPVRTTRRRSCVAEIS
SPAATDTRMTRRRSSLLTSTVIHEADPTQTAVAEPRMTRRRSSLLGIAKQ
AEETAQRQTIQPITEELAPVEENRNSIIMAETNIINNTNCLEQSIEITAV
EAEASFKADRRGTLYASELMDISSPRRRSVAKSSLELRQENLAPRARQSL
SNVTTQTSFLDVEQQVTPLFSSTRLPTGQTTGNRRRTIFNMDMDVINESI
ERMNQSHRMSLALANKAELGESCQVHEQEPPQAEPVPSQEPKRRRLFNPN
DEVVISPAMSNRKSRLSITGSGSSSSVQKRRRSLATPAKSSSSELCATTP
LSKAVTNKEAEKSKSNTEISEASLDAVPEVKKSTSNAGEENEKPKGKSRT
RIRTLVHTNMHQEQINVIRKVGNTTEASFLDH
BO32726.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:12:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MCPH1-PB | 826 | CG8981-PB | 1..826 | 1..826 | 4176 | 100 | Plus |
| MCPH1-PD | 1028 | CG42572-PD | 1..820 | 1..820 | 4145 | 100 | Plus |
| MCPH1-PA | 779 | CG8981-PA | 18..779 | 65..826 | 3855 | 100 | Plus |
| MCPH1-PC | 981 | CG42572-PC | 18..773 | 65..820 | 3824 | 100 | Plus |
