BO32733.complete Sequence
2557 bp assembled on 2012-07-27
GenBank Submission: KX798134
> BO32733.complete
GAAGTTATCAGTCGACATGCCAAACCAGATGAGAGTGCTGGACTTTGGCG
ATGGATCGGTGCCCATCCAGCTGGACTATCCAGATTCGAAGATCTTCAGC
AAGTGCAGTAGCTACGGCGATCGTGTTCCGGGTACCCATTGGAACGAAAT
CACAGTGCACCATAAGGGCCGCCTGGAATACTCGCCAAATCCGGAGCAGA
TAATCCTGGATGCCTTATACCAGGCGATAGACGGTGCGGACTTCTTTCCG
GTGTTCTACCAGCGTGGGAAGAACATGGATACCATGCTGGTCAGGAACTG
CAAGGCGGCCATTGATAAGCTCTTCAAACAGCGGCTGTCCATTAATCTGA
AAGGAGGCGCCTCCATACCCATCAGTATTCAACTGGGCGTAGCCCAGTAC
CAAAGGCACCAGATAACTCCAACGTTCCACATCGCACGGGTGGTCACCAG
ACTGATGAAACAATTGATTCAAAGGGACGGTGTGGATGGGCTACTTAATC
TGGACAACTTTGGGAGTCATCCGGAGTTTAAAAACCTTGTGGTAAGCCTG
GGCAATCCGAGCATCCTGATGAACGTGTGCCAGGTAATACACAATGATGA
CAATGAACGCTTTCGGCTGAACGGATTTATATTGTCTAACAACCGCATTC
GGGATATACGGCCCTTGACGCTACTCGCCAATGTGGACTACGCCCTGCTC
GACTTAAGGGGTAACAAGATTAAGTCAGCCGAACGTTTGTGCCGCGCTCT
AGAACAATTCCGGGCCAGAGAACTGCTTTTGGAGAACAACCCCATTGTAA
AGATATCCAACTTTCCGGCGAACATTAAATCGCTGGAGAGTAACTTCGAG
TTGGTGGATGGAAAGCCTTTCAACATGCTGCACAAGATCTTTTCTCCTCT
GGATGTGGAGATCGATTTGGAAGTGGATGGTGCGCGGATTGATACAAATA
ACATGTGGAAGTTGCCCGAGTTTGAGAACAGCCAGCATTGGCATGCCTTT
ATGATACCCGATCCCAGTCATGAATTTAACCAGGAGGTGTTCTTTGACTT
CTTCTTTATTAGGCTCGATCCGACCCTGAGCAACTTTTATCCCTGCTACT
ACAAGTACATTAACACGGAGCACGTTTTCCTCGTGCGCAATTGCTTTGAT
CAGATTGCACACCTGGTAAACAATTGCAACCTCGAGATGACAATTCCGAC
CGGTGATCGGATTTTTCGTTACTATCTGCGTATGAATGTGAGCACTGTCA
AGCAGCATCATGTCGATCCGGAGGAGTGCATACAGAAAGCTGTCTCGCAA
TGTTATGTGGCACAGAACCGAATGCTTAACCTCGAACGGTTTCACTCCAG
AGAATGTCTAAAGGATGTGATGGTGTCACTAAGCTCGCCAAAGATTTTAA
CCTACGTACTGTCGGTAGCGTCGCGGAAGTTCATGACCACCTGTTCAGAG
ATCCGTTTGTGCCACAACAAGGTCCTTGTTCTGGATGGAGCCCATGTCCT
TGGTATGATGGGGTGCCTGAGAGCGGTGGATCTCAGTCACAACTGGGTGC
AGGATCTGTCAAGCATCCACAGTCTGGGCAACCTACCTCTGAAGTCCCTG
GTACTTCACGGAAATAAACTCTGCCGCAACTACAGACTGCCCAGCGAATA
TGTCAGGGCGGTGAAGGAGGTGTTTCCACAGTTGACCACCTTGGATGGTG
TGGACCTGCAGACGAATCCTGGCCAGTCGTTGCAGAAGAACTTTCTTTGC
GATACAGGTGCCTACGAGTTGGTGGGTGCCTTTCTTGAAAACTATCTCCG
GGAGTTCGAAAACGATGAGTTTCGCCACAATCTGTACAAGTATTACTCTG
AAAACTCGATTTTTACTCTAACGTGCAACTACAACGTGGTTCAAAATCAC
CAGACTCCAAAGATATTGCAGCGTTTATCAAAGTACAACAGGCATGCACG
AAATCTGCGCAACAAGGACTATTCCAAGGCAAGCGATGGTGTGTTCTTTG
GCTGTACATATATTGTTGAAATACTTTTGCAACTGCCACGAGTCACCCAC
GACTTCCACTCCCTGCAGACGGACGTAATGCACTACAATGGTAAGGGGGC
GGTTATCTATGTTGCTGGTTTGCTACGGGATGAGCCACCTAGCACGAGGA
ACGGCCACGGGAGCAAAACGGACATCGGTGGCGTTCTTTTGGGCTTTAGC
CGACAGTTTGTGGTCACGTTCGATGAGGCGAACTTGGGATTGGGAAAGAG
AGCTCGTCGCCTAAAGATCGCCAACGAACGTCTACACATAACGAATCCAT
CGAAAACTGCAATACGAAATGCTTTCAGTGTAAATTTTCCGGATCCAAGT
GAACGTCAGGCGGAAGAGGATTCCCTGGATGTGAAGGATCACAAGCTCCT
GCTCTTTCAAGAGGTAACCGGCCTCATTTCCACTTGGGTCACATCGATTG
TGGAGGAAGCCGATTGGGACTTTGAGCGAGCCCTTAAATTGTTTATTCAG
AAGAATGCTGATCACGAAATCCCAGATCTAGCATTCGCCGCAAGCTTTCT
AGACCAT
BO32733.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:50:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nxf2-RB | 2526 | CG4118-PB | 1..2523 | 17..2539 | 12615 | 100 | Plus |
| nxf2-RA | 2526 | CG4118-PA | 1..2523 | 17..2539 | 12615 | 100 | Plus |
| nxf2-RC | 2478 | CG4118-PC | 1088..2475 | 1152..2539 | 6940 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:50:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nxf2-RB | 2771 | CG4118-RB | 98..2620 | 17..2539 | 12615 | 100 | Plus |
| nxf2-RA | 2863 | CG4118-RA | 190..2712 | 17..2539 | 12615 | 100 | Plus |
| nxf2-RC | 2723 | CG4118-RC | 1185..2572 | 1152..2539 | 6940 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:50:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16577382..16578515 | 2237..1104 | 5670 | 100 | Minus |
| 3L | 28110227 | 3L | 16579136..16579593 | 718..261 | 2290 | 100 | Minus |
| 3L | 28110227 | 3L | 16577010..16577313 | 2539..2236 | 1520 | 100 | Minus |
| 3L | 28110227 | 3L | 16579652..16579897 | 262..17 | 1230 | 100 | Minus |
| X | 23542271 | X | 12411..12622 | 2328..2539 | 940 | 96.2 | Plus |
| X | 23542271 | X | 23558..23769 | 2328..2539 | 940 | 96.2 | Plus |
| X | 23542271 | X | 35064..35275 | 2328..2539 | 940 | 96.2 | Plus |
| X | 23542271 | X | 46735..46946 | 2328..2539 | 940 | 96.2 | Plus |
| 4 | 1348131 | 4 | 1323806..1324017 | 2539..2328 | 940 | 96.2 | Minus |
| 4 | 1348131 | 4 | 1336788..1336999 | 2539..2328 | 940 | 96.2 | Minus |
| Ymm | 880023 | Ymm | 812486..812696 | 2329..2539 | 935 | 96.2 | Plus |
| 3L | 28110227 | 3L | 16578737..16578884 | 1003..856 | 740 | 100 | Minus |
| Ymm | 880023 | Ymm | 811978..812142 | 1926..2090 | 735 | 96.4 | Plus |
| 3L | 28110227 | 3L | 16578945..16579085 | 857..717 | 705 | 100 | Minus |
| Ymm | 880023 | Ymm | 812321..812481 | 1926..2086 | 700 | 95.7 | Plus |
| X | 23542271 | X | 11987..12151 | 1926..2090 | 660 | 93.3 | Plus |
| X | 23542271 | X | 23134..23298 | 1926..2090 | 660 | 93.3 | Plus |
| X | 23542271 | X | 34640..34804 | 1926..2090 | 660 | 93.3 | Plus |
| X | 23542271 | X | 46311..46475 | 1926..2090 | 660 | 93.3 | Plus |
| 4 | 1348131 | 4 | 1324277..1324441 | 2090..1926 | 660 | 93.3 | Minus |
| 4 | 1348131 | 4 | 1337259..1337423 | 2090..1926 | 660 | 93.3 | Minus |
| Ymm | 880023 | Ymm | 549988..550121 | 2539..2406 | 625 | 97.8 | Minus |
| Ymm | 880023 | Ymm | 848005..848139 | 2406..2539 | 580 | 97 | Plus |
| 3L | 28110227 | 3L | 16578576..16578678 | 1105..1003 | 515 | 100 | Minus |
| X | 23542271 | X | 12151..12236 | 2328..2413 | 370 | 95.3 | Plus |
| X | 23542271 | X | 23298..23383 | 2328..2413 | 370 | 95.3 | Plus |
| X | 23542271 | X | 34804..34889 | 2328..2413 | 370 | 95.3 | Plus |
| X | 23542271 | X | 46475..46560 | 2328..2413 | 370 | 95.3 | Plus |
| 4 | 1348131 | 4 | 1324192..1324277 | 2413..2328 | 370 | 95.3 | Minus |
| 4 | 1348131 | 4 | 1337174..1337259 | 2413..2328 | 370 | 95.3 | Minus |
| Ymm | 880023 | Ymm | 812142..812227 | 2328..2413 | 325 | 91.9 | Plus |
| X | 23542271 | X | 46654..46713 | 1929..1988 | 270 | 96.7 | Plus |
| X | 23542271 | X | 12330..12389 | 1929..1988 | 270 | 96.7 | Plus |
| X | 23542271 | X | 23477..23536 | 1929..1988 | 270 | 96.7 | Plus |
| X | 23542271 | X | 34983..35042 | 1929..1988 | 270 | 96.7 | Plus |
| 4 | 1348131 | 4 | 1324039..1324098 | 1988..1929 | 270 | 96.7 | Minus |
| 4 | 1348131 | 4 | 1337021..1337080 | 1988..1929 | 270 | 96.7 | Minus |
Blast to na_te.dros performed 2014-11-28 11:50:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-A | 13424 | TART-A 13424bp | 9091..9726 | 1926..2539 | 1489 | 73.6 | Plus |
| TART-A | 13424 | TART-A 13424bp | 9255..9340 | 2328..2413 | 394 | 95.3 | Plus |
| TART-A | 13424 | TART-A 13424bp | 9431..9493 | 1926..1988 | 288 | 95.2 | Plus |
BO32733.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-27 17:06:00 Download gff for
BO32733.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nxf2-RB | 79..2601 | 17..2541 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:20 Download gff for
BO32733.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nxf2-RA | 190..2712 | 17..2541 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:52:09 Download gff for
BO32733.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nxf2-RA | 190..2712 | 17..2541 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:52:09 Download gff for
BO32733.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16577008..16577312 | 2237..2541 | 99 | <- | Minus |
| 3L | 16577383..16578513 | 1106..2236 | 100 | <- | Minus |
| 3L | 16578576..16578677 | 1004..1105 | 100 | <- | Minus |
| 3L | 16578737..16578883 | 857..1003 | 100 | <- | Minus |
| 3L | 16578946..16579083 | 719..856 | 100 | <- | Minus |
| 3L | 16579136..16579591 | 263..718 | 100 | <- | Minus |
| 3L | 16579652..16579897 | 17..262 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:20 Download gff for
BO32733.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16570108..16570412 | 2237..2541 | 99 | <- | Minus |
| arm_3L | 16570483..16571613 | 1106..2236 | 100 | <- | Minus |
| arm_3L | 16571676..16571777 | 1004..1105 | 100 | <- | Minus |
| arm_3L | 16571837..16571983 | 857..1003 | 100 | <- | Minus |
| arm_3L | 16572046..16572183 | 719..856 | 100 | <- | Minus |
| arm_3L | 16572236..16572691 | 263..718 | 100 | <- | Minus |
| arm_3L | 16572752..16572997 | 17..262 | 100 | | Minus |
BO32733.pep Sequence
Translation from 16 to 2557
> BO32733.pep
MPNQMRVLDFGDGSVPIQLDYPDSKIFSKCSSYGDRVPGTHWNEITVHHK
GRLEYSPNPEQIILDALYQAIDGADFFPVFYQRGKNMDTMLVRNCKAAID
KLFKQRLSINLKGGASIPISIQLGVAQYQRHQITPTFHIARVVTRLMKQL
IQRDGVDGLLNLDNFGSHPEFKNLVVSLGNPSILMNVCQVIHNDDNERFR
LNGFILSNNRIRDIRPLTLLANVDYALLDLRGNKIKSAERLCRALEQFRA
RELLLENNPIVKISNFPANIKSLESNFELVDGKPFNMLHKIFSPLDVEID
LEVDGARIDTNNMWKLPEFENSQHWHAFMIPDPSHEFNQEVFFDFFFIRL
DPTLSNFYPCYYKYINTEHVFLVRNCFDQIAHLVNNCNLEMTIPTGDRIF
RYYLRMNVSTVKQHHVDPEECIQKAVSQCYVAQNRMLNLERFHSRECLKD
VMVSLSSPKILTYVLSVASRKFMTTCSEIRLCHNKVLVLDGAHVLGMMGC
LRAVDLSHNWVQDLSSIHSLGNLPLKSLVLHGNKLCRNYRLPSEYVRAVK
EVFPQLTTLDGVDLQTNPGQSLQKNFLCDTGAYELVGAFLENYLREFEND
EFRHNLYKYYSENSIFTLTCNYNVVQNHQTPKILQRLSKYNRHARNLRNK
DYSKASDGVFFGCTYIVEILLQLPRVTHDFHSLQTDVMHYNGKGAVIYVA
GLLRDEPPSTRNGHGSKTDIGGVLLGFSRQFVVTFDEANLGLGKRARRLK
IANERLHITNPSKTAIRNAFSVNFPDPSERQAEEDSLDVKDHKLLLFQEV
TGLISTWVTSIVEEADWDFERALKLFIQKNADHEIPDLAFAASFLDH
BO32733.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:12:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nxf2-PB | 841 | CG4118-PB | 1..841 | 1..841 | 4437 | 100 | Plus |
| nxf2-PA | 841 | CG4118-PA | 1..841 | 1..841 | 4437 | 100 | Plus |
| nxf2-PC | 825 | CG4118-PC | 1..825 | 1..841 | 4320 | 98.1 | Plus |
| sbr-PA | 672 | CG1664-PA | 109..538 | 321..767 | 212 | 22.6 | Plus |
