BO32752.complete Sequence
3751 bp assembled on 2012-09-12
GenBank Submission: KX795758
> BO32752.complete
GAAGTTATCAGTCGACATGGACCCGTTTACTCAGCACATGCTCGAGAAGG
CGGAACAGCGCAGTCGCGCCCTTGGCATCAGCAATGCCAGCAAATTTCCG
CTCGTCGAGTGCAGCGTTCCAAGCTCCTCCGCCACCTCCGCATCCGGCGG
GGATGCTGGGGTCCTGGCACCGAGGAGCCGGTCGCCTGGAGGCCAGAGCG
CGGCTAGCGGCGGCGGCAAGGTCGTTACGTTGGGAAAGGCCACGCTGGAG
GCGTCGCCGGCGAAGCCGCTGCGTCACTATACGGCGGTAAACAAGGAAAA
CTTGGATATGGGCATAGAGATAAACATAACCACGGACAAGCCAATTGGGG
TGCAAGTTGAGATTCAGGAGCAGGAGGTGACAGATGACGAAGAGCAGGCG
GAAGGAGGTGCGCTAAATCCCCTGCTGGAGGCGGAACCAGTAAACCAGCC
CCTAGCCAGGCTAAGGGACACTTCCCGCAGCCGACTGCAACGCATGGGTG
CCCTGTACTCAAACACGGACGATCTATCCTCCCCAATCCACCGAACCGAG
GGGCAGTTCCATGTGACAACGGGTGAGGAAGAGGACTGCGGCAACCGTAG
CAGCAGGCAACCAAAACAACGGTTGGGCAAACTGGCCGCCTTGGCGGATA
CCATCAATCAGTGGGAGGATGACACGTCGCACCACGAAGTGCACAGACTG
CTCGAAGCACCTCCACCGAAACCGCATTTGTCCAGTCGAAGGGCCGAGAA
GGGTCCAGCTCCACTGCCACCCAAGAAGGATGAAGTCGACGAGGCAAGCA
GGACCAAGCAGCTGAAGTGGGATCCCAAGGTATTGAGCTCTCTGGAGGCA
CAAGGTTTTCAGCGCCGCGAATCATCGACCATTAAACACACATATGATTA
TGCCAAACAGGAAGAGGCGGCCCCAGCCTCCAAAGTGGAAGATGCGGTAT
TAACTGCCAAGCCGCCAGTGCCGCAGAAATCAACGACGGTCAGCCAGGTC
GCCAAGAACTTTGCATCTTCCGCCCCAGCGCCTAAGCCCGCACCAGCGCC
TGCTGTTAGTGTGAAGTCCGGCTTGGTTTCCGGACGGGCGGCTCTCTTTG
AAAACAAGGGAACCGGAGGACAGTCGCAAGGCCTACGCAACCAGAAGGAT
CCTTGTGAGCTGTCGCTGAAGGAGCGGATGAAGCTGTTCGAAACGGGCAA
CAACAAAGCGATGTTGCCGATGGCGCCAATAGGATCTGCTCCCAGTATTA
CCCAAATCCGAGCGGAAGAGGTGAAACAACATTTAGCTGCAATGCATCCG
GTGACTGCTGCCGCAGCTACTACCGTGGTTGCAGCAACCAAGCCGAAACA
GGAAAACAAGCTGCGTGACAAGGTGGCCGCTTTGGTGGCAAATGCGCAAT
CAAGTGCAGAGACGCGTATCAAGGACATTGATCGCCAAAGGCAGGAAGAC
ATGCAGATTATTTCTAATCGCTTTAACAAACAAAAGGAGCTCTTTGACAA
TCAACCATCCGATAGTTCTGTGGCTGCTCAAGCTCGACCTCCCGCGCCAG
CTCCCAGCAGAGTAGTGCGGCCCATGCCACCGCCTCCACCACCGCCCATC
GCTGCTCTCTCGCCCGGACTGGCCAGCAGCAAGAGGCGATCACCTGGTGA
TGCGCCCACCACTGACGAGGATTCGAAGCGAGCCCGCAAATCGCATTCGG
ATCGTCTGTATCCCGCCCTGTCCGACCTCGACTCCAGCGGTGACAACTGC
TGCGCCGCCGAAACTGCCTCCGCTACGGATGACAGCCATCAACAGGACGA
GGAGGAAACCGAAAGTTGCATGGATGAGTCCGACGACCAGTCACAGACTG
AGGACAGTAGCGCCGGCATGTGCAATGGCAGTCTTGGCCGCGAGATAATG
AGCGCAGTGCAGCGCAACGAAGTGGAGATGCAGCAGCAGCAGACGGGCAA
GAAGACTGTGCGCTATGCGGACCAGGACATGTATTACGATGACAGCTCTC
TGAACTCGTCGCAGGTCTCAGCGGGCATCGATGATTATCTGGATGAAGCA
CTTGTCGAGGACTACGGCAGCACTCAGGATGACCAGAGCGACAGCGGGGA
CGAGCAAAATGCCAGTCGGCTGTCCTTGGGCAGCAAAGGAACGACGGCCT
CAAACAGCTTTTCCTTCCGAAAAAATCCTGCCTCTATTTGCACGCCTATC
GAAGAGCACCATGAGATGGAGATGGACCTGCAGACGCCACTGCTCAGTGG
TGCCCAGCCGGTCAAGTCTGAATTGAGTGTCAACCAGGACAACGACAACC
TGGTTACCCTGGTGCACACGGTCAGCTTCTATCGCCGCCAACAGAGCGCT
AACAGCTCCAATTCCACACCGGTTCGCAAGATCTGTCGAGAGCAGCAGGT
CATGCGATCAGCCCTAGCAGGCGATTGTCATGCCAAGCACAGACTGGAGT
ACGACTCTCCTCAGCAGTCTGATTATGTCGCAGCAGCAACTGACATAGCT
GATCAGACCGACGAGGACGATGAAGAGATGCAGAATGCGCGGGAAGTAAA
CGATGCATCGCAGGCACAAGACAAGATCAAAAAGCTGTTGAGCGAGGTGT
GCAAGCAGCAGCAGGTGATAGGACAAGCCAGTCAGGCCCTCAACCTTTGT
GCTGCCACCGTAGAATTCTCCGGCTCCACAGAGTCCGTGGAGGGAGAGCG
ATATCTCCTTCTTGCAACCCATCGACGCCAGGCGTGTTTGGATGAAGTCC
AGCGTTTAAGAGTTGAGAACAGTATTCGTCCGGTGGGTGCACCAAAAGAA
AAGGGCCTACTGACGGTCAAGGACATAACCATTCCACTGCGACAGGAGTA
CGTGCGTAAAATGGCCTCGAACAACATTAACGGCCATCATCTTGTGTGCC
TCCTGAAGTACAATGAGCACGTGCTGGCCACCAAGACAGTACCCACGATG
CCAGGGCTGCTGTCTGTCAAGTTTCCCGATGTCCTGCAACTAAACAATGT
ATATGCTGACTTCAGGATCACGCTAGAAATCTATGGCATGTTGGCCCAAC
GCGATCAGCTGCCTCACGAGCTGAAATACCACATCAACTTGAACAAGAAG
GGTGGCATCAAGACGCCAAAGAAGAAGGGCGGCGAGAATCGACTGGTGAT
GCCGCCAGTACAAAGTCCGGCGGGACCGCATGTGGTACGGACACCGCAGC
TGGTGCAATACGGCTTTGCCATTTTCTCGCTGCGTGAAATTCAACGCACC
ACATGGACGCTGACCCAGGTGCTGGGCGTCAGTCCACTGGAGGGTGTGGT
TCACATGAAAGTCAATTGCGAACTATCCGTAAGCGTGGAGTACAAGGGAT
TCCTTACCATGTTCGAAGACATCTCCGGTTTCGGGGCATGGCATCGTCGT
TGGTGCTATCTGAATGGCTCCGTGATCAACTACTGGAAGTACCCGGATGA
TGAGAAGCGCAAGACGCCAATGGGTAGTATAGATCTGAATTCCTGCACTT
CGCAGAAGGTGACCACGGCACCGCGCGACATTTGCGCCCGTCTCAACACC
ATGCTGCTGGAGTGCGAACGGCCGGCGCTGGAGACAGACCAAGAGTCCTT
GATAATCGTACCCAACGGACGTACCACCACGGTGCGCCATCTGCTCTCAG
CCGACACAAAGGAGGAGCGCGAGGAGTGGTGCGCCTACCTTAACAAGGCA
CTGACACTGCTGCGCGCCTGGGGAACCACCCACGCAAGCTTTCTAGACCA
T
BO32752.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:06:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| scra-RB | 3720 | CG2092-PB | 1..3717 | 17..3733 | 18585 | 100 | Plus |
| scra-RA | 3639 | CG2092-PA | 812..3636 | 909..3733 | 14125 | 100 | Plus |
| scra-RC | 1851 | CG2092-PC | 1..1803 | 17..1819 | 9000 | 99.9 | Plus |
| scra-RA | 3639 | CG2092-PA | 1..814 | 17..830 | 4070 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:06:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| scra-RB | 4311 | CG2092-RB | 326..4042 | 17..3733 | 18585 | 100 | Plus |
| scra-RA | 4147 | CG2092-RA | 1054..3878 | 909..3733 | 14125 | 100 | Plus |
| scra-RC | 2260 | CG2092-RC | 326..2128 | 17..1819 | 9000 | 99.9 | Plus |
| scra-RA | 4147 | CG2092-RA | 243..1056 | 17..830 | 4070 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:06:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7590945..7591873 | 349..1277 | 4645 | 100 | Plus |
| 2R | 25286936 | 2R | 7594256..7594973 | 3016..3733 | 3590 | 100 | Plus |
| 2R | 25286936 | 2R | 7591938..7592303 | 1278..1643 | 1830 | 100 | Plus |
| 2R | 25286936 | 2R | 7593418..7593781 | 2354..2717 | 1820 | 100 | Plus |
| 2R | 25286936 | 2R | 7590565..7590884 | 32..351 | 1600 | 100 | Plus |
| 2R | 25286936 | 2R | 7593888..7594193 | 2711..3016 | 1515 | 99.7 | Plus |
| 2R | 25286936 | 2R | 7593139..7593360 | 2132..2353 | 1110 | 100 | Plus |
| 2R | 25286936 | 2R | 7592899..7593077 | 1953..2131 | 895 | 100 | Plus |
| 2R | 25286936 | 2R | 7592358..7592537 | 1640..1819 | 870 | 98.9 | Plus |
| 2R | 25286936 | 2R | 7592693..7592833 | 1814..1954 | 705 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 13:06:11 has no hits.
BO32752.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-12 15:45:06 Download gff for
BO32752.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scra-RB | 326..4042 | 17..3735 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:51:00 Download gff for
BO32752.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scra-RB | 326..4042 | 17..3735 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:21:12 Download gff for
BO32752.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scra-RB | 326..4042 | 17..3735 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:21:12 Download gff for
BO32752.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7592362..7592533 | 1644..1815 | 100 | -> | Plus |
| 2R | 7592695..7592833 | 1816..1954 | 100 | -> | Plus |
| 2R | 7592901..7593077 | 1955..2131 | 100 | -> | Plus |
| 2R | 7593139..7593360 | 2132..2353 | 100 | -> | Plus |
| 2R | 7590444..7590461 | 17..34 | 100 | -> | Plus |
| 2R | 7590568..7590882 | 35..349 | 100 | -> | Plus |
| 2R | 7590946..7591873 | 350..1277 | 100 | -> | Plus |
| 2R | 7591938..7592303 | 1278..1643 | 100 | -> | Plus |
| 2R | 7593418..7593781 | 2354..2717 | 100 | -> | Plus |
| 2R | 7593895..7594193 | 2718..3016 | 100 | -> | Plus |
| 2R | 7594257..7594973 | 3017..3735 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:51:00 Download gff for
BO32752.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3480200..3480338 | 1816..1954 | 100 | -> | Plus |
| arm_2R | 3479867..3480038 | 1644..1815 | 100 | -> | Plus |
| arm_2R | 3477949..3477966 | 17..34 | 100 | -> | Plus |
| arm_2R | 3478073..3478387 | 35..349 | 100 | -> | Plus |
| arm_2R | 3478451..3479378 | 350..1277 | 100 | -> | Plus |
| arm_2R | 3479443..3479808 | 1278..1643 | 100 | -> | Plus |
| arm_2R | 3480406..3480582 | 1955..2131 | 100 | -> | Plus |
| arm_2R | 3480644..3480865 | 2132..2353 | 100 | -> | Plus |
| arm_2R | 3480923..3481286 | 2354..2717 | 100 | -> | Plus |
| arm_2R | 3481400..3481698 | 2718..3016 | 100 | -> | Plus |
| arm_2R | 3481762..3482478 | 3017..3735 | 99 | | Plus |
BO32752.pep Sequence
Translation from 16 to 3751
> BO32752.pep
MDPFTQHMLEKAEQRSRALGISNASKFPLVECSVPSSSATSASGGDAGVL
APRSRSPGGQSAASGGGKVVTLGKATLEASPAKPLRHYTAVNKENLDMGI
EINITTDKPIGVQVEIQEQEVTDDEEQAEGGALNPLLEAEPVNQPLARLR
DTSRSRLQRMGALYSNTDDLSSPIHRTEGQFHVTTGEEEDCGNRSSRQPK
QRLGKLAALADTINQWEDDTSHHEVHRLLEAPPPKPHLSSRRAEKGPAPL
PPKKDEVDEASRTKQLKWDPKVLSSLEAQGFQRRESSTIKHTYDYAKQEE
AAPASKVEDAVLTAKPPVPQKSTTVSQVAKNFASSAPAPKPAPAPAVSVK
SGLVSGRAALFENKGTGGQSQGLRNQKDPCELSLKERMKLFETGNNKAML
PMAPIGSAPSITQIRAEEVKQHLAAMHPVTAAAATTVVAATKPKQENKLR
DKVAALVANAQSSAETRIKDIDRQRQEDMQIISNRFNKQKELFDNQPSDS
SVAAQARPPAPAPSRVVRPMPPPPPPPIAALSPGLASSKRRSPGDAPTTD
EDSKRARKSHSDRLYPALSDLDSSGDNCCAAETASATDDSHQQDEEETES
CMDESDDQSQTEDSSAGMCNGSLGREIMSAVQRNEVEMQQQQTGKKTVRY
ADQDMYYDDSSLNSSQVSAGIDDYLDEALVEDYGSTQDDQSDSGDEQNAS
RLSLGSKGTTASNSFSFRKNPASICTPIEEHHEMEMDLQTPLLSGAQPVK
SELSVNQDNDNLVTLVHTVSFYRRQQSANSSNSTPVRKICREQQVMRSAL
AGDCHAKHRLEYDSPQQSDYVAAATDIADQTDEDDEEMQNAREVNDASQA
QDKIKKLLSEVCKQQQVIGQASQALNLCAATVEFSGSTESVEGERYLLLA
THRRQACLDEVQRLRVENSIRPVGAPKEKGLLTVKDITIPLRQEYVRKMA
SNNINGHHLVCLLKYNEHVLATKTVPTMPGLLSVKFPDVLQLNNVYADFR
ITLEIYGMLAQRDQLPHELKYHINLNKKGGIKTPKKKGGENRLVMPPVQS
PAGPHVVRTPQLVQYGFAIFSLREIQRTTWTLTQVLGVSPLEGVVHMKVN
CELSVSVEYKGFLTMFEDISGFGAWHRRWCYLNGSVINYWKYPDDEKRKT
PMGSIDLNSCTSQKVTTAPRDICARLNTMLLECERPALETDQESLIIVPN
GRTTTVRHLLSADTKEEREEWCAYLNKALTLLRAWGTTHASFLDH
BO32752.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:32:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| scra-PB | 1239 | CG2092-PB | 1..1239 | 1..1239 | 6383 | 100 | Plus |
| scra-PA | 1212 | CG2092-PA | 1..1212 | 1..1239 | 6210 | 97.8 | Plus |
| scra-PC | 616 | CG2092-PC | 1..604 | 1..604 | 3066 | 99.3 | Plus |
| CG30183-PC | 1555 | CG30183-PC | 781..1551 | 428..1235 | 203 | 20.5 | Plus |
| CG30183-PA | 1555 | CG30183-PA | 781..1551 | 428..1235 | 203 | 20.5 | Plus |
