BO32896.complete Sequence
4243 bp assembled on 2012-07-30
GenBank Submission: KX798493
> BO32896.complete
GAAGTTATCAGTCGACATGAGCGTTTTCGATGACTTCCAGCGTCTGTGGA
TGCAGCGATTTCCGCAAAGCTCTCTATCCGATGCATGGGAACAAGATGTT
CGGGCTAGTCTCGAGCGACACAAAGTGCGCATTAATGAGCTAAGCAAGGA
GCTTGAGCAGGAGACGCTCTATGTGGAGTATCTAGAGCGTCTGCTGTCCG
ACGTGGAACGGTATCGCGTTTCTGGCGGGGATCCAAAGGCACTCTTTGAG
GCTGCTAGCGGTAGTTGTGCTAGCAGCAATAACAGCAACTGCAGCAGCAC
CACCAATGGAGCTACACAAGAAGAAAGCAACACTAATCTGGACAAAGATT
TTAAATCTAGTTTAAATCTGCGCGAGTCTCCTTCTTCCACTGGCGCCAAG
GACAAGGATCGCCTGTCGCTCAACCCAGACAACAAATACACAACACACAC
AAATGCCGTTATAGGTGGGATCGGATCGGAAAAGGTGAGCGGTCCACTTC
ACTCCACTCAGATCACGGCGGACGGCAAACGAACAGGGGAGCTGTATTTA
AAGCGGGAAGAAGACAAATGCAAGGATAGTAATAGTGAGGACACCGATGG
GGCCCTGCAGCAGTGCATCACGGAATTGGCGGCGTCTTTAAAAGCCCAGC
CGGATAACGTGGCAGGAGGGCGTCTAGAAAACGATGTCGATATCGATAAA
CCGCTGCGCAAGTCGACGTCACAATACGTTACTGTCATTCAGGTCAAAGA
GGCCAAAGACAAAGAAAGCGCTGATGGAACTACCTCGTCATCGGGGATCG
GTGAACCGCAGCAGCAACCCACTCCACCATCCACATTTTCTCGATATTCG
GAGGCCACCGCTCCACCGCTTTCGCCATCGCTCACATCGTACGCTGCCCA
CGTAGAGGCCAAGAAGAAAATGCCACCCAGACCTCCGCCAAAGAATATTC
GGCGAGTTGAGCCCCCTACCATTCCCAGCCAGCAGCTATCGTCTTCGCCC
AAAAGGGAGACATATATGATCAACACGATGCCAAGCAGTTCAAGCGGCAG
TCTCTGCATTGACAGCCTGGGCAATTCGCTGGAGCGGAACATCAAGCCGT
CTGATATACTACGTCAGAAATCATCTGATAATTTGGATTCCAAGTACTCG
GCAAAACGGAAAACCACACCGGAGCTTAGTAAATTTGTGAACGTAAACAA
TCCTGAATTAATGGAGGAGCTCGGTCGTAAGATGGTAAGCAAGGCAGACA
GCCTGGAACAAACGAGGAGGAACGACTCGTCGCCTTCTGGCTGTGGTAGC
CTAGGACGCACTTCCTCCACGCCTGGGCGATCGTTGACTCCTGGACGAAC
CGGAGTTGGTGCCTCGCCAACTGGTAGTCTAAGTAAAACCGGAAAACTGG
CAATGGCGGACAGCAGCTCCACTAGCAGTCTAGAGAGGAGATCGTGCCTG
CAGGCTGTCGATGCGGACATTGGAACGGAATCGCGGGAATCGGGTGCCAA
CCAGCGTAGTGTAGGGTCCAAGGAGTCGCTGACATCACAAGGCATATCGG
AGGTGATCAAGAGCTACGAAAGCGTGTCTTCGCTAAGTTCGGAAAGTGCA
AAGGCGGTGGCTTCCCAACAGTCGGCGGCAGCGGGCGGAGCTTTAGCGGA
GTGTGAACCGTACTATGATAGCGTACCGCTCGACAACGGCGACGGAGAAT
ACGTTTTTATTAAGCCCGGCCGCACCGGATCCTCATCCAGTCGCGATGAT
TTGTCGACGCCTGGGAGCAGCATTTTGCCTTTGCCTAATGTAGCGGATCC
CGAATCTCCAGGCAGGACCTCTAACTACGTCAACATCGATTTCTTCCTTC
AGCAAGGAATTGAGACGCGCTCCAGTTCGCTAGACAGTGACGGGGAGTAC
GAGGGTCCGCCCATATTACGCACCATTTCGCACGACGATCAAACCACAAC
ACAAACTACTCCGGGAGCAATTCGCAAGAACTTAGTTTCGGCGATACTTG
TTTGTGGAAATGCGCGCGGTGCTAAAATACGTTCCATACTTAGCTCAATT
ATTCAAAGTGAGACTATCTACGTGGAATGCCTCAATAAAATGATGCAGTA
CAAGAAGGCCATCCACGCAACCCTAACTACTTCGCAGCCTGTGATCAGGG
AGGAGGAGGAGAACACAATTTTCTTTAAAATTGATGAGCTTTACGATCTG
CATACCGGTTTCTTATCTGATTTAAAGACTATTGTGTCTCACGAGGGTGG
TGATGTGCTGATCGGTGAGCCGTTTCGTCGACTGGCGGAGATGTTTGACT
TATACAGTGCCTTTTTGCACAACTACAAAAATGCTATTGAGACTGTGAAG
AAGTGCAGTGCCAATAACCCCCAGTTTAAAAAGATCGTCTCCACCATTGT
GCTTAATCTGCAGACGGAACAATCGCTAACTCTCGAGGATCTATTGCACA
AACCTGTTGCGAGGGTACAAATCAACGCATTGGTCTTCAACGATTTGCTA
CGCGAAACCCCAAATGCGCATCCGGATCACCAGCCATTAAGGCAGGCGCA
AAAGATTATTCAGATGTTCCTCAATCAGTTCAATGTGGTCAATCAGCGGT
TGCCCATTGAATCGAATCGAAATTTAAGACGCATGGTGCGTAATTCTTTT
ATTGTAGAACTTGTCGATGGACATCGTAAGCTGCGGCATCTCTTTCTTTT
TAATGATGTCATCGCATGTGCCAAATACAAAGCATTAGGCCGCGATCGTA
TCGACTATGAGCTCAAATGGTTCATTCCGCTAAAAGACGTATCCATTTAC
GAGGAAGCAGATCCGGCGGTCGAGCTTAAGGAATCTAGTCCAGCAAACAT
TTCGCAAGTAAAACGCAATTTGCGATCCGTTCGAGATCAATTGGCCATGG
AGGTGGCTAACAGTGGAAGTGGAGCCTTCCGTTCCGGTGATAAGTATCGC
CGCAAGCTGGCGGATCTGGAATCACAGCTGGTGCTGGCAACGCCCAATTT
AGTGTTGCGCCTGGGGAACAAGGCAAATAATAAAACCATAACCTTCTTTC
TTAGCTCGGATTTTGAGAGGACGCAGTGGATCGACTCAATCTTATCCCTT
AAGCAAAAATGCAACCTGCCTGGAGCAAATACTATTAATTCCCTGGAGGT
TACCGCCTTCATTGTAGCCATGCAGAAGGGCATGAAAACCGAAATGGGTT
CATATCTTATGCGTAACACTAACGACGAGAGCCTGTTGGTTGGGGACCTG
TACATGGGAGTTCATGGATTGGAAGGACTGGAGCAAGCGAACGACCTGTA
CATCTGCGTCGAGGTGGACTCCTATGGCCACTATTTTCGCAAGGCCACCA
CCAAGAAGATATGTCGCAGTCAAACGCCGCTCTGGAACGAAAGCTTTATG
CTGGAACTGGAGGGCAGCCAGAATGTACGCATTCTTCTTTATGAGGCTAA
GGAGCGACCGCTTCTTAAAGCCAAGCACATACTTAAGTTGAGTTTAAGTT
GGCTGACAGAAACAACGCAGCCGAAGTCAATTAAACTTACTGAGACCTTA
GAGCTCGGCTGTAGCTTCCGTTTTATACCAGGCGAGCTCTTCCGCGGCAG
CACAAAGCCAGGAGCCCTCTTCGGTGCCAAAATGAGTCAAGTATTAAAAC
GTGAAAAACGCGACATTCCGTTCATCATAGGCGCCTGCATTCGGGAGGTA
GAGCGGCGTGGGATGCTGGAGGTTGGCTGCTACCGCGTCAGCGGTTCCGC
TTCTGATTTGGCGAAGCTGAAGAAGGCCTTTGAGTCTGATGCCTATGAGG
CGGAGCAGTTGCTACGCGAGGTGGACATCCATTCGGTCACTGGCATTCTG
AAAACTTTTTTAAGGGAGCTCCCCGAGGCCCTTTTCACGGATCAACTTTA
TCCACGATTTTTCGACACATTCAGCGCCTTTAGCAACAACAACGAATCCA
CACGAATCAACGAGCTTCTAAAAGTTTTTGAGGAGTTGCCACAGGCCAAC
AAAGCCTCCATTACTTCGATATTAGATCATTTAATAAGAGTCCACGAAAA
GGAGACAGATAACAAGATGTCGTTGCACAATCTGGCCATGGTGTTTGGAC
CAACCTTGCTAAGGCCGGGCCAAACGCAGGTGAAGCAGAAGGATCCACTG
GCAGCCAGCACAGTCGACGTTATGGCTCAGGCAGGAATCCTATACTGCTT
TCTTCAGGCACGGATCAAGAAGGATGCAAGCTTTCTAGACCAT
BO32896.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:53:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RhoGAP1A-RB | 4212 | CG40494-PB | 1..4209 | 17..4225 | 21045 | 100 | Plus |
| RhoGAP1A-RA | 4212 | CG40494-PA | 1..4209 | 17..4225 | 21045 | 100 | Plus |
| RhoGAP1A-RE | 4215 | CG40494-PE | 1..4212 | 17..4225 | 20980 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:53:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RhoGAP1A-RB | 5012 | CG00000-RB | 303..4513 | 15..4225 | 21055 | 100 | Plus |
| RhoGAP1A-RA | 5082 | CG00000-RA | 303..4513 | 15..4225 | 21055 | 100 | Plus |
| RhoGAP1A-RE | 5089 | CG40494-RE | 307..4520 | 15..4225 | 20990 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:53:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 137250..138260 | 2093..3103 | 5055 | 100 | Plus |
| X | 23542271 | X | 133500..134127 | 928..1555 | 3140 | 100 | Plus |
| X | 23542271 | X | 132807..133384 | 353..930 | 2890 | 100 | Plus |
| X | 23542271 | X | 138320..138705 | 3102..3487 | 1930 | 100 | Plus |
| X | 23542271 | X | 129080..129417 | 15..352 | 1690 | 100 | Plus |
| X | 23542271 | X | 134268..134565 | 1555..1852 | 1490 | 100 | Plus |
| X | 23542271 | X | 139274..139524 | 3788..4038 | 1255 | 100 | Plus |
| X | 23542271 | X | 139583..139771 | 4037..4225 | 945 | 100 | Plus |
| X | 23542271 | X | 138768..138930 | 3486..3648 | 815 | 100 | Plus |
| X | 23542271 | X | 139067..139206 | 3649..3788 | 700 | 100 | Plus |
| X | 23542271 | X | 134634..134760 | 1852..1978 | 635 | 100 | Plus |
| X | 23542271 | X | 136635..136733 | 2000..2098 | 495 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 11:53:48 has no hits.
BO32896.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-30 09:39:44 Download gff for
BO32896.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGAP1A-RB | 305..4513 | 17..4227 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:31 Download gff for
BO32896.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGAP1A-RA | 305..4513 | 17..4227 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:53:04 Download gff for
BO32896.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGAP1A-RA | 305..4513 | 17..4227 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:53:04 Download gff for
BO32896.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 129082..129417 | 17..352 | 100 | -> | Plus |
| X | 132807..133384 | 353..930 | 100 | -> | Plus |
| X | 133503..134127 | 931..1555 | 100 | -> | Plus |
| X | 134269..134564 | 1556..1851 | 100 | -> | Plus |
| X | 134634..134760 | 1852..1978 | 100 | -> | Plus |
| X | 136055..136075 | 1979..1999 | 100 | -> | Plus |
| X | 136635..136733 | 2000..2098 | 100 | -> | Plus |
| X | 137256..138260 | 2099..3103 | 100 | -> | Plus |
| X | 138322..138705 | 3104..3487 | 100 | -> | Plus |
| X | 138770..138930 | 3488..3648 | 100 | -> | Plus |
| X | 139067..139206 | 3649..3788 | 100 | -> | Plus |
| X | 139275..139524 | 3789..4038 | 100 | -> | Plus |
| X | 139585..139771 | 4039..4227 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:31 Download gff for
BO32896.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 35662..35911 | 3789..4038 | 100 | -> | Plus |
| arm_X | 25469..25804 | 17..352 | 100 | -> | Plus |
| arm_X | 29194..29771 | 353..930 | 100 | -> | Plus |
| arm_X | 35972..36158 | 4039..4227 | 98 | | Plus |
| arm_X | 29890..30514 | 931..1555 | 100 | -> | Plus |
| arm_X | 30656..30951 | 1556..1851 | 100 | -> | Plus |
| arm_X | 31021..31147 | 1852..1978 | 100 | -> | Plus |
| arm_X | 32442..32462 | 1979..1999 | 100 | -> | Plus |
| arm_X | 33022..33120 | 2000..2098 | 100 | -> | Plus |
| arm_X | 33643..34647 | 2099..3103 | 100 | -> | Plus |
| arm_X | 34709..35092 | 3104..3487 | 100 | -> | Plus |
| arm_X | 35157..35317 | 3488..3648 | 100 | -> | Plus |
| arm_X | 35454..35593 | 3649..3788 | 100 | -> | Plus |
BO32896.pep Sequence
Translation from 16 to 4243
> BO32896.pep
MSVFDDFQRLWMQRFPQSSLSDAWEQDVRASLERHKVRINELSKELEQET
LYVEYLERLLSDVERYRVSGGDPKALFEAASGSCASSNNSNCSSTTNGAT
QEESNTNLDKDFKSSLNLRESPSSTGAKDKDRLSLNPDNKYTTHTNAVIG
GIGSEKVSGPLHSTQITADGKRTGELYLKREEDKCKDSNSEDTDGALQQC
ITELAASLKAQPDNVAGGRLENDVDIDKPLRKSTSQYVTVIQVKEAKDKE
SADGTTSSSGIGEPQQQPTPPSTFSRYSEATAPPLSPSLTSYAAHVEAKK
KMPPRPPPKNIRRVEPPTIPSQQLSSSPKRETYMINTMPSSSSGSLCIDS
LGNSLERNIKPSDILRQKSSDNLDSKYSAKRKTTPELSKFVNVNNPELME
ELGRKMVSKADSLEQTRRNDSSPSGCGSLGRTSSTPGRSLTPGRTGVGAS
PTGSLSKTGKLAMADSSSTSSLERRSCLQAVDADIGTESRESGANQRSVG
SKESLTSQGISEVIKSYESVSSLSSESAKAVASQQSAAAGGALAECEPYY
DSVPLDNGDGEYVFIKPGRTGSSSSRDDLSTPGSSILPLPNVADPESPGR
TSNYVNIDFFLQQGIETRSSSLDSDGEYEGPPILRTISHDDQTTTQTTPG
AIRKNLVSAILVCGNARGAKIRSILSSIIQSETIYVECLNKMMQYKKAIH
ATLTTSQPVIREEEENTIFFKIDELYDLHTGFLSDLKTIVSHEGGDVLIG
EPFRRLAEMFDLYSAFLHNYKNAIETVKKCSANNPQFKKIVSTIVLNLQT
EQSLTLEDLLHKPVARVQINALVFNDLLRETPNAHPDHQPLRQAQKIIQM
FLNQFNVVNQRLPIESNRNLRRMVRNSFIVELVDGHRKLRHLFLFNDVIA
CAKYKALGRDRIDYELKWFIPLKDVSIYEEADPAVELKESSPANISQVKR
NLRSVRDQLAMEVANSGSGAFRSGDKYRRKLADLESQLVLATPNLVLRLG
NKANNKTITFFLSSDFERTQWIDSILSLKQKCNLPGANTINSLEVTAFIV
AMQKGMKTEMGSYLMRNTNDESLLVGDLYMGVHGLEGLEQANDLYICVEV
DSYGHYFRKATTKKICRSQTPLWNESFMLELEGSQNVRILLYEAKERPLL
KAKHILKLSLSWLTETTQPKSIKLTETLELGCSFRFIPGELFRGSTKPGA
LFGAKMSQVLKREKRDIPFIIGACIREVERRGMLEVGCYRVSGSASDLAK
LKKAFESDAYEAEQLLREVDIHSVTGILKTFLRELPEALFTDQLYPRFFD
TFSAFSNNNESTRINELLKVFEELPQANKASITSILDHLIRVHEKETDNK
MSLHNLAMVFGPTLLRPGQTQVKQKDPLAASTVDVMAQAGILYCFLQARI
KKDASFLDH
BO32896.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:16:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RhoGAP1A-PB | 1403 | CG00000-PB | 1..1403 | 1..1403 | 7127 | 100 | Plus |
| RhoGAP1A-PA | 1403 | CG00000-PA | 1..1403 | 1..1403 | 7127 | 100 | Plus |
| RhoGAP1A-PE | 1404 | CG40494-PE | 1..1404 | 1..1403 | 7115 | 99.9 | Plus |
| RhoGAP1A-PD | 1402 | CG40494-PD | 1..1402 | 1..1403 | 7111 | 99.9 | Plus |
| RhoGAP1A-PC | 903 | CG40494-PC | 1..903 | 302..1211 | 4570 | 99.2 | Plus |
