BO32917.complete Sequence
5086 bp assembled on 2012-07-30
GenBank Submission: KX796145
> BO32917.complete
GAAGTTATCAGTCGACATGTCGTTTGTGGGCGGGGGCGGGTGCGGTGGCC
AGGACGTGCACAAGTTTGTGGAGGCCCTGCAGGCGGATTTCAAGACCCTC
TCGCTGGAGACCAAGAAGAAGTATCCTCAGATCAAGGAGGCGTGCGAGGA
GGCCATTTCCAAGCTCTGCACAGCTGGCAGCAGCCAGCAAAACTCGGTGT
ACTACACCGTCAACCAGATACTCTATCCGCTGGTGCAGGGATGCGAGACC
AAGGACCTCAAGATCATCAAGTTTTGCTTAGGCATGATGCAGCGGCTCAT
CACCCAGCAGGTGGTGGACCAGAAGGGCGCCCTATACATCACCAACGCAC
TGTGGACCCTAATGGAGAACAACATCGAGGAAGTCAAAGTGCTGCAAACA
GTAACTCTTTTGCTGACCACCAATACGGTGGTGCACGGCGACACATTGGC
CAAGGCCTTAGTTCTGTGCTTTCGCCTGCACTACGCCAAAAATCCCACAA
TTGTGAATACGGCCGGTGCCACCATCCGGCAGCTGGTGTCCCTGGTGTTT
GAGCGAGTGTACCTGGAGAAAGACTCGGTTTCCAGCCTCCAGCAGCAACA
GTCCAGTGGTTCGCCAGCTGAGGGAGAGGGCGGAAATCAGGATGTGCAGA
CCTTTGCTTCGGATGCATTCCTGCTATTTCAGGATCTTGTGCAGTTGGTA
AACGCGGATCAGCCCTACTGGCTGTTGGGCATGACCGAAATGACGCGCAC
CTTTGGTCTGGAGTTACTTGAGGCCGTGCTGACCAACTTCAGTGCCGTGT
TTCACGAGAGTAACGACTTTCGACTGCTACTTAAGGAACGAGTCTGTGCC
TTGGTCATAAAGCTCTTCTCGCCAAACGTCAAGCATCGCCAGCTGCCTGC
ACCAAGCAATGGAAACGCTCCTGTGCCGGCCGAGAAACCCTATTTCCCAA
TTAGCATGCGTTTGCTGCGCCTCGTGGCTATACTTATACAAAAATACCAC
ACTATACTGGTAACAGAGTGTGAGATCTTTCTGTCGCTGATTATCAAGTT
CTTGGATCCGGATAAGCCAGCTTGGCAGCGAGCCCTGGCCCTCGAGGTTA
TCCATAAGCTGGTGACGCGCTCTTCACTGATTGCATTCTTCTGCAAGTCG
TACGACTTAAAAAATCATGCAACCAATATTGTGCATGACATGATTGCTGC
CATGGGCAGCTACATTCGATATTCCCTGATCAATGCATCGGCCATGCTGA
ATGGCCAGCAGAATGGAGTCGCCAATTCACTGACAGCCATGTCGGGAAGC
AATCAATGTGGCTTCATGTTTCGAGGTGCTTACCTTCCCTTGGTAGCCAC
ATATGCGCCAGGCGTCTCAAAGGCCGTTTACTTGGAAATGTTGGATAAGA
TAGATGCATCGAATATTCCCGACAGTTATGGCATCTCGGTTGGGCATGCT
ATTCTACTGGATATGACTCGATCGATTGGAGGTGTCATTCAGCGAACCCC
GGAGCTTCATCCCAGCCACAATACGGCAGTGATCACTGAGGAGGAGCACA
AGCCACTGTGCCTCCAACTGGTGAATTCCAGCTGGTCTGCCCTGCTCAGC
GCTTTTATTCCGTTGGTTGAGACGTCGATTGACGAGGCCACCACGGAGAA
CATCCTCAAGGCTATGCAAAATTATGCAGCTCTGTGCGGAATGCTGGAGC
AACTGCAGCCCCGAGACGCCTTTATAATGGCCATGTGCCGCGCCTCCTTT
CCGCCCCACTATGCCATGTCCATATTTGCCAATACCACACAGTCGGATGG
TGACTTGAGATGTCACACGCGCAGTGGTAGTCAAGATCTAAGCAGCCAGT
TCATCAATAGCTGTAGTGGCGATGCAGGAGACTTCCGACCCCAGATCGTA
GCGGTGGGTACACCACTGCCATCGGCATCGCTGCCCCACAGCGTGATGCA
AGCGCCCGTGATGCTGACTAACAAGAATCTACAGTGTATGCGAGCTATTC
TTTTCCTAGCGCACAACAATGGTGGGATTTTGGGTACCTCCTGGCATATT
GTGCTGCAGACGCTGCAGCATCTAGTGTGGATCTTGGGGCTGAAACCTTC
TACCGGAGGCAGTCTTCAGGCCATGCCAAAGCCAGCTGTAGAGGCTAATG
TGGGAATTCAAACGGCAGTGATGGCTGATCTTCCGGTCCTGTCACAAATG
CTTAGCCAGCTGTTCGAGTCCAGTCAATATCTGGACGATGTAGCGCTGCA
TCATTTAATCGATGCATTGTGCAAGCTCTCCCACGAGGCCATGGAACTTG
CTTATGCCAATCGGGAACCATCGCTTTTTGCGGTAGCCAAACTGCTAGAG
ACTGGCCTAGTAAACATGCCCCGCATAAAGGTATTGTGGCGACCACTTAC
AAATCACCTGCTGGAGGTGTGCCAACATCGACATATTCGAATGCGGGAGT
GGGGCGTGGAAGCCATTACCTACCTGGTGAAGTCTGCCCTACAGTTCAAG
CACAAAACGCCCCTCAAGGAGAACATGGAACTACAAACAATGCTGCTGAG
TCCACTCTCTGAGTTGTCTACTGTCCTGCACGCAGATGTACGTCAGCGAC
AGCTGGATTGCGTCCTTCAGATCCTAAACACTGCAGGGGAAATCCTCTCG
TTTGGCTGGCCAGCCATTATTGAGATCATTGGTGCTGTAAACGAGCACCA
TGGCGAGCCGTTAATTCGCACAGCATTCCAATGCCTGCAGTTGGTTATCA
CAGATTTCCTGACCGTAATGCCATGGCGGTGTCTGCCGCTGTGCATCAGC
ACTGCTGCTAAGTTCGGCTCCCAGACCCAGGAATTGAACATTTCTTTGAC
GGCTATCGGTCTCATGTGGAATATTTCAGACTTCTTTAATCAAAACCAAG
ACAAGCTAATGTCCACTCAGCTGCAGGATGTGTCCATTCTGCCCGACTTC
CCAGGCACAGTGAAGATGCCGCAGTTCGATAAGTTGTGGATGTGCTTGTA
CGCCAAGCTGGGCGAGCTGTGTGTGGATCTGCGTCCGGCGGTGCGTAAAT
CGGCCGGCCAGACGCTCTTCTCCACCATCTCCGCCCACGGCAGCCTGCTT
AATCCGCCCACGTGGCAGGCGCTGGTCTGGCAGGTTCTCTTCCCGCTGCT
GGACAACGTGCGTGCTCTGAGCAGCTCGGCCAGCAACGAGAAGGTGGACG
CCAGTGGCAACATTCTTATCCATCACTCGCGCAACACCGCCCAAAAGCAG
TGGGCAGAAACGCAGGTGCTGACTCTATCGGGCGTCTGCAGGGTGTTCAA
TACAAAACGGGAGCTGCTTCAGATGCTGGGTGATTTTGAGCGAGCCTGGT
CACTAATTCTAGAGTTCATCCAGAATGCTGCGTTGAGCAAAAATGGTGAA
GTTTCACTTGCTGCTCTGAAGTCTCTACAGGAGATCATGTACCACAACAC
AGCAGAGCGAACAGAGAGGGCATTGAAGGATCCTCAGACGGCACAGGAGC
AGGACGAGGAAATTTGGACTATTGCTTGGAACATTTGGCTTAGCATTGGC
ATGGAGAGCACCAAAATGTCCACATCGACGTCAGCGAAGTTGCAGCAGCA
AAATAGCAATGGCGCCGAAACTCAGGAGGACTTTTACATTCCCAGTCAGG
CCTTCCTCACCGCCCTGATCCAAATCTTTCCCGCCATTTTTCAGCACATT
CAAGTCAAATTTACTGCCGCAGACTTTGACAAATTCTGTACGGTACTGAC
GAACGCTGTGTGCATTCCCGTCCAGACCGATGCGGTTCCCTACATCATGT
CCACTGTGTCGGACACCCTGCTGACGCCGCTACACGATGGCATTCTCGAT
TGCATGGAACTAATACAGAAGGAGGCGACAAAACCCGATTCCCACATCAG
CCAGCTTATCCCTGCCATTTTCCGGCAGTTGCTGATCTTTAGTAAATTCG
CTTGCGCACCGCCCACATTTCAGCAGAGTGTGGAGCACAAGTATGCGAAG
TCCTCGGGACACTATGCCAACAATGCCTCCGTTGAGGTGGTCAGCATGAA
CTACATACCTTTCGGTGAGAAGTCAATCAGTATTTGCGTGAAGCTTTACC
AGACCACGGCCACCGAGGATTCGGTTGTGCAGGAGCAGATTCTGCATGAC
ATCGTCAAGGCTCTGCGCACGCCGCTGGCGATGAAGTACAAATGCCTTTC
CTCCAGCACATGGAAGCTGGCCATTTCCAGTCTGATTAGCGTGCTGCATA
CTGGTCTCAAGGTGGCGCGAGCTAAGCCGCAACATTTCGCAAGCTTGTGG
GACGATTTGGCCGATACCCTGGACAAGTTCCTGTTTCCGGCGAGTGTGTG
CACCATCGAGGATCGCGGTCTCGAGGAGATCGTGCTGGATGAAACGATCG
ATTGTCAGGTTATTGAGCTGCTGAGGGACGAGGTGTTGCCTCACTCGCAC
GAAATGCCACACCAGTTTATCATGCAGATCGTAGTGCTGCTGAACAAGGG
ATCTATACACTCCGCCTCAGACACGAACATTTGCTACGAATCCGACTGGA
AGCTGCGTGAGATTTTTGCCAAAACGTGTTTCGAGACCCTTCTGCAGTTC
TCGCTGCTAGAGGACCATGCCAACACCAACAACAATCGTCTCAACGCCAA
TGTGTTGACTGCTGGGGCCGCGGGAGCAGGTGGCAAGGACTTTGCCGGCA
GACTAGCAGTCACCGCCCTGTTGCATCGATTCCAAGAGGTGCTCAAACGG
TTTAACGACGATGAGAGACAAAGCGGAAAGTGTCCGCTTCCAAGGTTCCG
GCTATCAGAGATATCGTTTGTGCTAAAAGCCATTGCAACACTTGTGGTAT
CCATGAAAAAAGCGCCAGCATCAAAGGTCAACAAGCCGGCTTGGGATCAG
TTGATTGGCCTGTATCCATACCTGGTGGACTGCACCACAACAACGTCGCC
GGAAGTGTCAAGATCACTACGAGAAGCACTGCTCCAGTACACGGACTTGC
TGCAGGCGCCACGATCCTGCTCAGCGGCCACCTCAAACGACAATGTAATA
CAATCGAATGGACAAGAGGCAAGCTTTCTAGACCAT
BO32917.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:54:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mon2-RC | 5055 | CG8683-PC | 1..5052 | 17..5068 | 25260 | 100 | Plus |
mon2-RB | 5055 | CG8683-PB | 1..5052 | 17..5068 | 25260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:54:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mon2-RC | 5479 | CG8683-RC | 196..5248 | 16..5068 | 25265 | 100 | Plus |
mon2-RB | 5806 | CG8683-RB | 196..5248 | 16..5068 | 25265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:54:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8117925..8118851 | 4796..3870 | 4635 | 100 | Minus |
2L | 23513712 | 2L | 8120693..8121409 | 2528..1812 | 3585 | 100 | Minus |
2L | 23513712 | 2L | 8119504..8120158 | 3520..2866 | 3275 | 100 | Minus |
2L | 23513712 | 2L | 8121961..8122541 | 1380..800 | 2875 | 99.7 | Minus |
2L | 23513712 | 2L | 8122709..8123247 | 808..270 | 2695 | 100 | Minus |
2L | 23513712 | 2L | 8121471..8121903 | 1813..1381 | 2165 | 100 | Minus |
2L | 23513712 | 2L | 8120245..8120584 | 2866..2527 | 1700 | 100 | Minus |
2L | 23513712 | 2L | 8117523..8117714 | 5068..4877 | 960 | 100 | Minus |
2L | 23513712 | 2L | 8119220..8119407 | 3708..3521 | 940 | 100 | Minus |
2L | 23513712 | 2L | 8118903..8119070 | 3872..3705 | 825 | 99.4 | Minus |
2L | 23513712 | 2L | 8123304..8123437 | 271..138 | 670 | 100 | Minus |
2L | 23513712 | 2L | 8123691..8123815 | 140..16 | 625 | 100 | Minus |
2L | 23513712 | 2L | 8117779..8117863 | 4877..4793 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 11:54:13 has no hits.
BO32917.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-30 09:39:48 Download gff for
BO32917.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8683-RB | 188..5239 | 17..5070 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:41 Download gff for
BO32917.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mon2-RB | 197..5248 | 17..5070 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:53:16 Download gff for
BO32917.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mon2-RB | 197..5248 | 17..5070 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:53:16 Download gff for
BO32917.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8117520..8117713 | 4878..5070 | 98 | <- | Minus |
2L | 8117779..8117861 | 4795..4877 | 100 | <- | Minus |
2L | 8117927..8118849 | 3872..4794 | 100 | <- | Minus |
2L | 8118904..8119066 | 3709..3871 | 100 | <- | Minus |
2L | 8119220..8119407 | 3521..3708 | 100 | <- | Minus |
2L | 8119504..8120157 | 2867..3520 | 100 | <- | Minus |
2L | 8120245..8120583 | 2528..2866 | 100 | <- | Minus |
2L | 8120694..8121409 | 1812..2527 | 100 | <- | Minus |
2L | 8121473..8121903 | 1381..1811 | 100 | <- | Minus |
2L | 8121961..8122532 | 809..1380 | 100 | <- | Minus |
2L | 8122709..8123245 | 272..808 | 100 | <- | Minus |
2L | 8123304..8123435 | 140..271 | 100 | <- | Minus |
2L | 8123692..8123814 | 17..139 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:41 Download gff for
BO32917.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8123304..8123435 | 140..271 | 100 | <- | Minus |
arm_2L | 8123692..8123814 | 17..139 | 100 | | Minus |
arm_2L | 8117520..8117713 | 4878..5070 | 98 | <- | Minus |
arm_2L | 8117779..8117861 | 4795..4877 | 100 | <- | Minus |
arm_2L | 8117927..8118849 | 3872..4794 | 100 | <- | Minus |
arm_2L | 8118904..8119066 | 3709..3871 | 100 | <- | Minus |
arm_2L | 8119220..8119407 | 3521..3708 | 100 | <- | Minus |
arm_2L | 8119504..8120157 | 2867..3520 | 100 | <- | Minus |
arm_2L | 8120245..8120583 | 2528..2866 | 100 | <- | Minus |
arm_2L | 8120694..8121409 | 1812..2527 | 100 | <- | Minus |
arm_2L | 8121473..8121903 | 1381..1811 | 100 | <- | Minus |
arm_2L | 8121961..8122532 | 809..1380 | 100 | <- | Minus |
arm_2L | 8122709..8123245 | 272..808 | 100 | <- | Minus |
BO32917.pep Sequence
Translation from 16 to 5086
> BO32917.pep
MSFVGGGGCGGQDVHKFVEALQADFKTLSLETKKKYPQIKEACEEAISKL
CTAGSSQQNSVYYTVNQILYPLVQGCETKDLKIIKFCLGMMQRLITQQVV
DQKGALYITNALWTLMENNIEEVKVLQTVTLLLTTNTVVHGDTLAKALVL
CFRLHYAKNPTIVNTAGATIRQLVSLVFERVYLEKDSVSSLQQQQSSGSP
AEGEGGNQDVQTFASDAFLLFQDLVQLVNADQPYWLLGMTEMTRTFGLEL
LEAVLTNFSAVFHESNDFRLLLKERVCALVIKLFSPNVKHRQLPAPSNGN
APVPAEKPYFPISMRLLRLVAILIQKYHTILVTECEIFLSLIIKFLDPDK
PAWQRALALEVIHKLVTRSSLIAFFCKSYDLKNHATNIVHDMIAAMGSYI
RYSLINASAMLNGQQNGVANSLTAMSGSNQCGFMFRGAYLPLVATYAPGV
SKAVYLEMLDKIDASNIPDSYGISVGHAILLDMTRSIGGVIQRTPELHPS
HNTAVITEEEHKPLCLQLVNSSWSALLSAFIPLVETSIDEATTENILKAM
QNYAALCGMLEQLQPRDAFIMAMCRASFPPHYAMSIFANTTQSDGDLRCH
TRSGSQDLSSQFINSCSGDAGDFRPQIVAVGTPLPSASLPHSVMQAPVML
TNKNLQCMRAILFLAHNNGGILGTSWHIVLQTLQHLVWILGLKPSTGGSL
QAMPKPAVEANVGIQTAVMADLPVLSQMLSQLFESSQYLDDVALHHLIDA
LCKLSHEAMELAYANREPSLFAVAKLLETGLVNMPRIKVLWRPLTNHLLE
VCQHRHIRMREWGVEAITYLVKSALQFKHKTPLKENMELQTMLLSPLSEL
STVLHADVRQRQLDCVLQILNTAGEILSFGWPAIIEIIGAVNEHHGEPLI
RTAFQCLQLVITDFLTVMPWRCLPLCISTAAKFGSQTQELNISLTAIGLM
WNISDFFNQNQDKLMSTQLQDVSILPDFPGTVKMPQFDKLWMCLYAKLGE
LCVDLRPAVRKSAGQTLFSTISAHGSLLNPPTWQALVWQVLFPLLDNVRA
LSSSASNEKVDASGNILIHHSRNTAQKQWAETQVLTLSGVCRVFNTKREL
LQMLGDFERAWSLILEFIQNAALSKNGEVSLAALKSLQEIMYHNTAERTE
RALKDPQTAQEQDEEIWTIAWNIWLSIGMESTKMSTSTSAKLQQQNSNGA
ETQEDFYIPSQAFLTALIQIFPAIFQHIQVKFTAADFDKFCTVLTNAVCI
PVQTDAVPYIMSTVSDTLLTPLHDGILDCMELIQKEATKPDSHISQLIPA
IFRQLLIFSKFACAPPTFQQSVEHKYAKSSGHYANNASVEVVSMNYIPFG
EKSISICVKLYQTTATEDSVVQEQILHDIVKALRTPLAMKYKCLSSSTWK
LAISSLISVLHTGLKVARAKPQHFASLWDDLADTLDKFLFPASVCTIEDR
GLEEIVLDETIDCQVIELLRDEVLPHSHEMPHQFIMQIVVLLNKGSIHSA
SDTNICYESDWKLREIFAKTCFETLLQFSLLEDHANTNNNRLNANVLTAG
AAGAGGKDFAGRLAVTALLHRFQEVLKRFNDDERQSGKCPLPRFRLSEIS
FVLKAIATLVVSMKKAPASKVNKPAWDQLIGLYPYLVDCTTTTSPEVSRS
LREALLQYTDLLQAPRSCSAATSNDNVIQSNGQEASFLDH
BO32917.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:16:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mon2-PC | 1684 | CG8683-PC | 1..1684 | 1..1684 | 8651 | 100 | Plus |
mon2-PB | 1684 | CG8683-PB | 1..1684 | 1..1684 | 8651 | 100 | Plus |
Sec71-PA | 1653 | CG7578-PA | 894..1300 | 634..1049 | 204 | 21.3 | Plus |