BO32920.complete Sequence
5056 bp assembled on 2012-07-30
GenBank Submission: KX799456
> BO32920.complete
GAAGTTATCAGTCGACATGTTTAAGTGGGTTACGCCGGCCTCAACGGCGA
CGTTGTCCCGCTGCACACTGCCAGCAACAACAGCAGCCACAACAACAACA
ACGGCGATGGCAGCAACGAGAACAGCAACGACAACGACGAGAACAACAAG
ACCACAACTACTTTCCATCGCTTTAACAAGTTTAATAATAATAGTCGCAT
CATTTGTGCCGACAACAAGTGGATTTAGATCAATTGAAACGAATGGCGGT
GGTCGCAAGCTCTTTGGGGGCTATCGCATCACACCGAAGCACTGCCGTGC
CACCAAGACGCTGCCCAGCTCGGATCCACGGGCCAATGGACCCACCATCT
GCATGTTTAACCACGAGTGCGCACAGCGGGGTGGCGAGGTGGTGGGCGCC
TGCATGGACGGCTTCCTCTTCGGCGCCTGCTGCCAGATCCCGCCCACCCA
CGAGTTGGCCAGCACGCTGATTAACGAGGCGCAGAACGCCTACTTCCAGC
AGCACCAGCAGCAGACGAAGCTCCAGCAGTCAGCAGCCCAATCCTCGTTC
GAAAGCTACGGCGAACAGCAACAGTCATTGAGCGAGGAGCAGGTGGCACA
GCAGCCGTCGCAGAACATCTACGATCAGCAGAACCTGGACAAGGTGTACC
AGCAACTGGACAGCAGCAGTAGCATCAGTCCACCCAACGGAGCCTACGGC
GATGAGCCGCAGCAGCAGGAGTATCAGTCGGAGTCGGAGCAGCCCGTAAG
GGATGAGAATGCGTATCCTACCAGCAGTTCATCCACCGAGGCCACTCAGT
CGCAGTCCTCCTCCGCCAGTGTGGAATTTGAGCAGGAGCCCTCCCAACCA
GCAGATGCCTCCAACGATCAGACCACTCAGAAGATCAACAAACAGCCCGT
CCAGCCACCCAACTTCCACGTCCACAAGCACTCCGTAACCATCAACTCAC
CCTCTTCGCCGCCTCAAAACGATGACTTCGTAATGCAGGTGCTAAGCACC
TTGCCACCTGAGCATGCGGATGACCATCATATTGTCTTTACCACCGAGGT
GCCCACCAAGATCACCAGTGGATTGCAGGATCAAACGAGCTCTGAGTCCA
ACTCCTTCGAAGAGGTGTCTTCGACGCCAGCAGCCACCCAAAAACCGAAA
CCCAAGCCAACTCAAATGCCCACTCAGAAGACCACTCAGAAGGCCACGCA
GAAGCCCACTCCAAAGCCCACACAGAAAGCCAAGCCGAAACCAGTTCCCC
AACTGGCGGAGAGCATGAAGCGACCCATCCAACAGAAGCCACAGCAGGTG
GCGAAACCTAAGCCAAGCCCTAAGCCTGCCCAGTCCACAAACAACCACCA
CCACAACCACTTGATCCTGGACGGTGGCGAGTTCACGCACAGTGACATCA
CCCACCCCGGAGCAGATGCCGATCTCGTGGAGGATCTGCAATTCTCCACT
GGCTATGGCCCCCAACCTGTGTACGCAGAACCACCGAAGCAGCAACAGCA
ACAGCAACCTGCTGAGCAGAGCTACATTTCCTCCAGCACTAGTGCGAAAC
GTCCAACGACAGGTCATAATAGTCCCACCACTGTTTCGTCAATTACCACC
CACGTAGACTCTATCGAGTCCATCATCCTGCAGCTAAACAATACCAGTCA
TGGTCCCAGCTATAATGTTGTGAGCCAGCAGACCCCATCATATGGATATC
CTGGAGCAGCAGTGGTTCAGACTGAGCCAGCAGCCCAAAATCCGACCTTC
TACCAGGAGAACGAGTCGGAGAAGGTCCAGGAGTCGGACTCGCAGTCTGA
TTACGGTTACACCACCACAGTTAACTACGAGTCTTTCTACGACAAGGTTT
CAGATGAGCAGGATGCCTCCGCTGCTGTCAGTCAGTCTGCTGAGATGCCC
ACCGCACGTCCTGGATACGGAGAAGATGTTTCCGCTGTGCTGGAGGACCA
TACGATGCCGGCCAATGGTTACCACGATGCCGAGGCTCCAGTTGCTCCAC
AGACTTCGGAGTTTAACAAGATGCCAGTGATGGGCATTGCCTATCCAGTG
GATATGTCTTATATGGAGGAGGAGGGAAATCTTCCGGCCACTGCAGCTGG
TTATGGCCAGATGAGCAGTGACTCCTACGAGGCGAGCACTGAATCCACCT
ACCAGAAGTTGTCAACGGTCCAAACGGAGGAGCCGCAGCCAACTTACGTG
CGCCCCACAACCAATGCCAATAAGCAGAATCGCCCAGTGGCCTCCTACAT
TGGAATGGTGACAATGCAGCACTATAACCCGCAGCCCGGAAATGGTGACT
ACCAGGCTCAAGTGCCCCCCGAAGTATCCGTGTCCTCGCACACCACCAAA
GTCCAGGAGCAGATGGATGAGACCTCGAATGGCTATCAGCAATCGGAGAC
CACTTCTGGCTATGTTTCGCCACCAACTGCTGTTCCTGCGCCAGCACAGC
GGCCTCAGTATGACGCTGTCCAGGGTGATGCTTCCTCGGAGCGACCTGTC
CTGGTGACGGCCAGTCCCAGGCCCCGACCCAAGCCCAGTACCAAGCGACC
TGCCGTGAAGAGACCCATCAGCGGCGAGAGCACCAAGAAGAAACCTCAGC
CACAGCCAAGTGCCGGTGCCTACAACCAAGAGAAGATCAGCGAACATAGC
ACAAGAAAGCCAGTGTCCAATGGATACGATAAGGTACCCGAGTCGCCCAT
CACACACATTCAGATTAAGAAGCCATCGGCAACTCAACACAAGGAACAAG
AGCAGACGGGATACCCCAGACCTGCCAGCCCTGCGGGATACGAACAGACA
ACTGCCGCAGCTCCTGCGCCAGCTGCTCCTTCTCTCAACTACGACAAGCC
GGATGCTCCTCCCAGCCAGTACGACCAGCCCTCGGCTCCATCCGCAAGTT
ACGATCAGTTGGCGCCGATGCCGTCTCTCAACTACAACGAGCAGCACGCT
AGTTCACCAGGAAGGAAGCCGTCAACGGCCAAGCCCATTTCCACCAGCTA
TGTGACCGGACCCAGTACCCCACGACCCCCAGCCACCGTTGATTACCACT
ATGACAATGTGCCACCACTGTTCATGGCGGACGACAAGCTGGATGCCTTC
ATCCAGAGCACTGCGGAGAACATTGTCGGATCAACCCCGGGCAACTATCA
GCCTCCGCTGGTGGCTACCGCATCGACGCCCGCTTACGCCCATAGACCAA
CCAGCAGTGGTAGCTATGGCCATAAGAAGCCTGGCTTCGTCCAGATCAAT
GGAACACCCAAACCTCCCAGACCGACGGTGCTCATTACGCCCAAGCCCAC
TGCCATAAATCTTGTGACCTACAGCTCTTTGAGCGACGATAGCAACAAGC
TGGCCTCCAGCACAAGTTCTTATGTGACCGGAAGACCGGGAGTACAGGGA
GTAAGTTCCAACGACTTCAAGGATCCCGGATACTTTGGCAGTAGCCCCGT
CCATGTGGCATTCACGCAATCCACCACAGAGGCCGTCTACGCAGTGCCCT
CCGATGACAAGCCAGCATTCCCAGGATACTTCGGGCCAACGCCCTCGTAT
CCCGCCTTCTCAGTTCCCGGCGAGAAAGTGGGCCAGAATGTTATGGAGGA
AACCTACACGTCGCCCAATGATTTCGTCAACTTCCCGCCGGTAAGGAACC
CCAATCTGAACATGTCGGCTGCCTCCAGCGCAGTGACCAGCGATCTCGAC
CTCTCCACACCCGCCTTTGTGGAGGATGTGGTGCTCAAGGACAAGATGCA
CACCCTGGTTCACAAATTGGTAGCCTCGCTGCAGGGTAACTTTGAGGCCC
TGGCCGATATGATCGAAGAGCCGGGAAGCAACAAGACCGTGGCCACCTAC
CAAGCCGGAGCAGGAGGAACTGCCAAGCCTGTGAGAGTAGTAACCACACG
GAAGCCTGTGAGGACAGCCACCACAACCAGGCCCAAGGTAACCACAAAGA
AACCAGTCACCCGGGTCACGACAAAGGCTCCCAACAAGAAGACCTCCGCT
GTCAGCACCACCACTCGCAAGCCCGCTACGCGTCGCACCACCGTTGCCGC
AAAGGTAACCACCACCACTCGGAGACCGGCGACCAAGAAGCCAACTCGCA
GGGTAAGCAGTACCGTGAAGACCACGACCGTTAGTTCGGCTAGACCGGCG
GACGACGAGATCGTGGACGAGGAGGACGAAGAGGACGTTAACCCGAATCC
CAGCGACAACGAGATTGACCAAGGAGCTACTTTGAGCTCGTACGGCGGAG
CCAACGGTCGGAAGATTCAGTGCGGTGTACGGCCCCATGTCAAGTCCGGC
CGCATTGTCGGAGGCAAGGGCTCCACCTTCGGCGCCTACCCCTGGCAGGT
CCTCGTCCGGGAGTCCACCTGGCTGGGCCTATTCACCAAGAACAAGTGCG
GCGGCGTCCTAATCACCAGCCGCTACGTCATCACCGCCGCCCATTGTCAG
CCTGGATTCCTGGCCTCTCTGGTGGCTGTTATGGGCGAGTTTGACATTTC
CGGCGACCTGGAGAGCAAGCGTTCAGTGACCAAGAATGTCAAGCGCGTCA
TTGTCCACCGGCAGTACGATCCAGCCACGTTTGAAAACGATCTGGCCCTG
CTGGAACTGGACAGTCCAGTGCAATTCGATACCCATATAGTGCCCATTTG
CATGCCCAATGATGTGGCGGACTTCACTGGACGCATGGCGACAGTGACGG
GATGGGGACGCCTTAAGTACGGAGGTGGAGTTCCCTCCGTTCTCCAGGAG
GTGCAGGTGCCGATTATCGAGAACAGCGTTTGCCAGGAGATGTTCCACAC
CGCTGGACACAACAAGAAGATTCTCACCTCCTTCCTGTGCGCCGGCTATG
CCAACGGACAAAAGGACTCGTGCGAGGGCGACAGTGGCGGTCCGCTGGTG
CTGCAACGACCGGATGGACGCTACGAGTTGGCCGGAACCGTTTCCCACGG
CATCAAGTGTGCGGCGCCGTATCTGCCAGGTGTCTATATGCGCACCACCT
TCTACAAGCCGTGGCTGCGCAGCATAACGGGCGTGAAAGCAAGCTTTCTA
GACCAT
BO32920.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:54:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8213-RB | 5025 | CG8213-PB | 1..5022 | 17..5038 | 25110 | 100 | Plus |
CG8213-RC | 5082 | CG8213-PC | 1..4253 | 17..4269 | 21265 | 100 | Plus |
CG8213-RD | 4293 | CG8213-PD | 1..4252 | 17..4268 | 21260 | 100 | Plus |
CG8213-RC | 5082 | CG8213-PC | 4310..5079 | 4269..5038 | 3850 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:54:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8213-RB | 6439 | CG8213-RB | 741..5764 | 15..5038 | 25120 | 100 | Plus |
CG8213-RC | 6171 | CG8213-RC | 416..4670 | 15..4269 | 21275 | 100 | Plus |
CG8213-RD | 6637 | CG8213-RD | 741..4994 | 15..4268 | 21270 | 100 | Plus |
CG8213-RC | 6171 | CG8213-RC | 4727..5496 | 4269..5038 | 3850 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:54:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8971425..8975445 | 4268..248 | 20105 | 100 | Minus |
2R | 25286936 | 2R | 8984925..8985160 | 250..15 | 1180 | 100 | Minus |
2R | 25286936 | 2R | 8970865..8971051 | 4455..4269 | 935 | 100 | Minus |
2R | 25286936 | 2R | 8970612..8970797 | 4640..4455 | 930 | 100 | Minus |
2R | 25286936 | 2R | 8970021..8970184 | 5038..4875 | 820 | 100 | Minus |
2R | 25286936 | 2R | 8970243..8970365 | 4877..4755 | 615 | 100 | Minus |
2R | 25286936 | 2R | 8970426..8970545 | 4758..4639 | 600 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 11:54:18 has no hits.
BO32920.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-30 09:39:49 Download gff for
BO32920.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8213-RB | 407..5422 | 23..5040 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:43 Download gff for
BO32920.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8213-RB | 749..5764 | 23..5040 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:53:17 Download gff for
BO32920.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8213-RB | 749..5764 | 23..5040 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:53:17 Download gff for
BO32920.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8970865..8971051 | 4269..4455 | 100 | <- | Minus |
2R | 8970019..8970182 | 4877..5040 | 98 | <- | Minus |
2R | 8970244..8970363 | 4757..4876 | 100 | <- | Minus |
2R | 8970428..8970543 | 4641..4756 | 100 | <- | Minus |
2R | 8970612..8970796 | 4456..4640 | 100 | <- | Minus |
2R | 8971425..8975444 | 249..4268 | 100 | <- | Minus |
2R | 8984927..8985152 | 23..248 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:43 Download gff for
BO32920.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4857524..4857687 | 4877..5040 | 98 | <- | Minus |
arm_2R | 4857749..4857868 | 4757..4876 | 100 | <- | Minus |
arm_2R | 4857933..4858048 | 4641..4756 | 100 | <- | Minus |
arm_2R | 4858117..4858301 | 4456..4640 | 100 | <- | Minus |
arm_2R | 4858370..4858556 | 4269..4455 | 100 | <- | Minus |
arm_2R | 4858930..4862949 | 249..4268 | 100 | <- | Minus |
arm_2R | 4872432..4872657 | 23..248 | 100 | | Minus |
BO32920.pep Sequence
Translation from 16 to 5056
> BO32920.pep
MFKWVTPASTATLSRCTLPATTAATTTTTAMAATRTATTTTRTTRPQLLS
IALTSLIIIVASFVPTTSGFRSIETNGGGRKLFGGYRITPKHCRATKTLP
SSDPRANGPTICMFNHECAQRGGEVVGACMDGFLFGACCQIPPTHELAST
LINEAQNAYFQQHQQQTKLQQSAAQSSFESYGEQQQSLSEEQVAQQPSQN
IYDQQNLDKVYQQLDSSSSISPPNGAYGDEPQQQEYQSESEQPVRDENAY
PTSSSSTEATQSQSSSASVEFEQEPSQPADASNDQTTQKINKQPVQPPNF
HVHKHSVTINSPSSPPQNDDFVMQVLSTLPPEHADDHHIVFTTEVPTKIT
SGLQDQTSSESNSFEEVSSTPAATQKPKPKPTQMPTQKTTQKATQKPTPK
PTQKAKPKPVPQLAESMKRPIQQKPQQVAKPKPSPKPAQSTNNHHHNHLI
LDGGEFTHSDITHPGADADLVEDLQFSTGYGPQPVYAEPPKQQQQQQPAE
QSYISSSTSAKRPTTGHNSPTTVSSITTHVDSIESIILQLNNTSHGPSYN
VVSQQTPSYGYPGAAVVQTEPAAQNPTFYQENESEKVQESDSQSDYGYTT
TVNYESFYDKVSDEQDASAAVSQSAEMPTARPGYGEDVSAVLEDHTMPAN
GYHDAEAPVAPQTSEFNKMPVMGIAYPVDMSYMEEEGNLPATAAGYGQMS
SDSYEASTESTYQKLSTVQTEEPQPTYVRPTTNANKQNRPVASYIGMVTM
QHYNPQPGNGDYQAQVPPEVSVSSHTTKVQEQMDETSNGYQQSETTSGYV
SPPTAVPAPAQRPQYDAVQGDASSERPVLVTASPRPRPKPSTKRPAVKRP
ISGESTKKKPQPQPSAGAYNQEKISEHSTRKPVSNGYDKVPESPITHIQI
KKPSATQHKEQEQTGYPRPASPAGYEQTTAAAPAPAAPSLNYDKPDAPPS
QYDQPSAPSASYDQLAPMPSLNYNEQHASSPGRKPSTAKPISTSYVTGPS
TPRPPATVDYHYDNVPPLFMADDKLDAFIQSTAENIVGSTPGNYQPPLVA
TASTPAYAHRPTSSGSYGHKKPGFVQINGTPKPPRPTVLITPKPTAINLV
TYSSLSDDSNKLASSTSSYVTGRPGVQGVSSNDFKDPGYFGSSPVHVAFT
QSTTEAVYAVPSDDKPAFPGYFGPTPSYPAFSVPGEKVGQNVMEETYTSP
NDFVNFPPVRNPNLNMSAASSAVTSDLDLSTPAFVEDVVLKDKMHTLVHK
LVASLQGNFEALADMIEEPGSNKTVATYQAGAGGTAKPVRVVTTRKPVRT
ATTTRPKVTTKKPVTRVTTKAPNKKTSAVSTTTRKPATRRTTVAAKVTTT
TRRPATKKPTRRVSSTVKTTTVSSARPADDEIVDEEDEEDVNPNPSDNEI
DQGATLSSYGGANGRKIQCGVRPHVKSGRIVGGKGSTFGAYPWQVLVRES
TWLGLFTKNKCGGVLITSRYVITAAHCQPGFLASLVAVMGEFDISGDLES
KRSVTKNVKRVIVHRQYDPATFENDLALLELDSPVQFDTHIVPICMPNDV
ADFTGRMATVTGWGRLKYGGGVPSVLQEVQVPIIENSVCQEMFHTAGHNK
KILTSFLCAGYANGQKDSCEGDSGGPLVLQRPDGRYELAGTVSHGIKCAA
PYLPGVYMRTTFYKPWLRSITGVKASFLDH
BO32920.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:16:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8213-PB | 1674 | CG8213-PB | 1..1674 | 1..1674 | 8774 | 100 | Plus |
CG8213-PC | 1693 | CG8213-PC | 1..1693 | 1..1674 | 8741 | 98.8 | Plus |
CG8213-PD | 1430 | CG8213-PD | 1..1417 | 1..1417 | 7398 | 100 | Plus |
Sb-PB | 787 | CG4316-PB | 197..782 | 1047..1667 | 674 | 30.7 | Plus |
Sb-PA | 787 | CG4316-PA | 197..782 | 1047..1667 | 674 | 30.7 | Plus |