BO32927.complete Sequence
3211 bp assembled on 2012-09-07
GenBank Submission: KX794055
> BO32927.complete
GAAGTTATCAGTCGACATGCATGTTGAACAAACACGAATAAATATGCAGT
CTCAAGGACAGAGCCATCAACTGCCGTCCGCGGCCCATATATTATTAGAT
CAAAATCCGAATTCAACAGGCAGTAACCTAGTCGTAAAACAAAATGACAT
TCAATCTCTTTCATCAGTCGGTTTACTCGAGTTGGCCCATAGAGAATACC
AAGCTGTTGACTATGAAAGCGCGGAAAAGCATTGCATGCAATTATGGCGT
CAAGACAGTACAAATACTGGAGTTTTGTTGTTGCTGTCATCTATTCACTT
TCAGTGCAGACGTCTTGATAAGTCAGCGCAATTCTCAACATTGGCAATAA
AACAAAACCCTGTGCTGGCAGAAGCTTATAGTAATTTAGGAAATGTTTTT
AAAGAGCGTGGACAGTTACAAGAAGCTTTAGACAACTATCGCAGAGCTGT
ACGTCTAAAACCAGATTTTATTGATGGATACATTAATTTGGCTGCTGCAT
TAGTTGCTGCTCGTGACATGGAGTCTGCCGTTCAAGCTTATATTACAGCG
TTACAATATAATCCTGATCTGTATTGTGTGCGCAGCGATCTGGGAAATCT
TCTTAAGGCTCTCGGTCGTTTGGAAGAAGCCAAGGCTTGTTACCTAAAGG
CAATTGAAACATGTCCTGGCTTTGCAGTTGCATGGAGTAACCTAGGATGT
GTGTTTAACGCTCAGGGAGAAATTTGGTTGGCTATACATCACTTTGAAAA
AGCTGTGACTCTTGATCCCAATTTTTTGGATGCATACATAAATTTGGGAA
ACGTTCTTAAGGAGGCACGAATATTTGATAGAGCTGTGGCCGCCTATTTA
CGTGCATTAAATCTATCTCCGAATAATGCTGTAGTTCATGGCAATTTGGC
ATGCGTTTACTATGAACAAGGTCTTATTGATTTAGCTATCGATACATATA
GGAGGGCAATAGAACTGCAACCAAATTTCCCCGATGCGTACTGCAACCTT
GCAAACGCTCTCAAAGAAAAGGGGCAGGTTAAAGAAGCTGAGGACTGCTA
TAACACTGCACTAAGACTATGTTCAAATCATGCAGATTCCCTTAATAATT
TAGCTAACATAAAGAGAGAGCAGGGGTATATTGAAGAAGCTACGCGACTT
TATTTAAAAGCTTTGGAAGTTTTCCCCGATTTTGCTGCTGCTCATTCAAA
TTTGGCATCTGTTTTGCAACAGCAAGGCAAATTAAAGGAAGCGTTAATGC
ATTATAAGGAAGCTATTAGAATTCAACCCACATTTGCTGATGCATATTCA
AACATGGGGAATACTCTTAAAGAATTGCAAGATGTCAGCGGGGCATTGCA
ATGCTACACGAGAGCAATTCAAATTAACCCAGCATTTGCTGATGCGCATA
GTAATTTGGCAAGCATACACAAAGATTCCGGAAATATTCCTGAAGCGATT
CAGTCTTACCGAACGGCTCTAAAGTTAAAACCTGATTTTCCTGATGCATA
CTGCAATTTGGCTCATTGCTTGCAAATTGTTTGTGATTGGACTGACTACG
ATATTCGCATGAAAAAACTGGTTAGCATTGTCACTGAGCAGCTTGAAAAA
AACCGTTTACCATCCGTGCATCCACACCACTCGATGCTTTATCCGTTGAC
ACATGATTGTCGGAAAGCAATTGCAGCGCGACACGCTAATTTGTGTTTAG
AAAAAGTTCACGTGCTTCATAAAAAACCTTATAATTTCTTAAAGAAGTTG
CCTACAAAAGGAAGGCTTCGAATAGGTTATCTTAGCTCGGACTTCGGGAA
TCATCCTACCTCGCATTTAATGCAATCTGTGCCAGGTCTTCATGATCGTT
CAAAAGTGGAAATCTTTTGCTATGCCTTAAGTCCAGATGATGGTACAACA
TTTCGACACAAAATCAGTCGAGAGTCTGAAAACTTTGTGGATCTTTCTCA
GATCCCTTGTAATGGCAAGGCAGCGGACAAGATATTTAATGACGGTATAC
ATATTTTGGTTAATATGAATGGCTACACAAAGGGTGCAAGAAATGAAATA
TTTGCTCTTCGCCCTGCTCCTATTCAAGTAATGTGGTTAGGCTATCCAGG
TACTAGTGGGGCTAGTTTTATGGATTACATTATTACGGATTCTGTAACTA
GTCCATTAGAATTGGCTTACCAATATAGTGAAAAATTGTCATATATGCCG
CACACATATTTTATAGGTGATCATAAGCAAATGTTTCCACATTTAAAGGA
ACGAATAATTGTCTGTGACAAACAACAATCTTCCGTTGTTGACAATGTAA
CGGTTATAAATGCAACAGATTTATCTCCCCTTGTTGAAAACACAGATGTA
AAGGAGATAAAAGAAGTTGTTAACGCACAAAAACCAGTCGAGATAACTCA
TAAAGTTGCGGAGTTACCAAATACAACACAAATAGTATCAATGATAGCCA
CTGGTCAAGTGCAAACATCTTTAAATGGCGTTGTAGTTCAAAACGGATTG
GCCACTACCCAAACTAACAACAAGGCCGCTACTGGTGAAGAGGTACCACA
AAATATTGTAATAACTACTCGACGTCAATATATGTTACCAGATGACGCTG
TTGTGTATTGCAATTTTAATCAGCTATACAAAATCGATCCACAAACCCTC
GAGTCATGGGTAGAAATTTTAAAAAATGTGCCTAAGTCAGTTTTGTGGTT
ATTAAGGTTTCCAGCAGTTGGTGAGCAAAATATTAAAAAAACCGTCAGTG
ACTTTGGAATATCTCCTGATAGAGTAATATTTTCCAATGTTGCGGCAAAA
GAAGAGCACGTACGACGGGGTCAATTAGCTGATATATGTCTTGATACTCC
TTTATGCAATGGGCATACAACATCTATGGACGTTTTGTGGACGGGTACCC
CTGTCGTAACTTTGCCAGGAGAGACGTTAGCCTCACGAGTGGCTGCCTCT
CAGCTGGCTACCCTTGGATGTCCAGAGTTAATAGCGCGTACAAGAGAAGA
ATATCAAAATATTGCTATACGCCTGGGAACAAAAAAAGAATATTTGAAAG
CCTTACGGGCAAAAGTATGGAAAGCCCGCGTAGAGAGTCCTCTCTTTGAT
TGCTCACAGTATGCCAAAGGATTAGAAAAATTGTTTCTACGAATGTGGGA
AAAATACGAAAATGGAGAACTTCCGGACCACATTTCAGCAGTAGCAAGCT
TTCTAGACCAT
BO32927.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:58:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sxc-RB | 3180 | CG10392-PB | 1..3177 | 17..3193 | 15870 | 100 | Plus |
| sxc-RA | 3180 | CG10392-PA | 1..3177 | 17..3193 | 15870 | 100 | Plus |
| sxc-RC | 3180 | CG10392-PC | 1..3177 | 17..3193 | 15870 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:58:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sxc-RB | 3498 | CG10392-RB | 92..3268 | 17..3193 | 15870 | 100 | Plus |
| sxc-RA | 3557 | CG10392-RA | 151..3327 | 17..3193 | 15870 | 100 | Plus |
| sxc-RC | 3678 | CG10392-RC | 212..3388 | 17..3193 | 15870 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:58:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5326061..5327792 | 1026..2757 | 8660 | 100 | Plus |
| 2R | 25286936 | 2R | 5329009..5329265 | 2937..3193 | 1285 | 100 | Plus |
| 2R | 25286936 | 2R | 5316268..5316479 | 170..381 | 1060 | 100 | Plus |
| 2R | 25286936 | 2R | 5320417..5320615 | 633..831 | 995 | 100 | Plus |
| 2R | 25286936 | 2R | 5325801..5326001 | 829..1029 | 990 | 99.5 | Plus |
| 2R | 25286936 | 2R | 5320005..5320192 | 379..566 | 940 | 100 | Plus |
| 2R | 25286936 | 2R | 5327847..5328028 | 2756..2937 | 910 | 100 | Plus |
| 2R | 25286936 | 2R | 5307499..5307654 | 17..172 | 780 | 100 | Plus |
| 2R | 25286936 | 2R | 5320248..5320317 | 566..635 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:58:23 has no hits.
BO32927.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-07 11:02:26 Download gff for
BO32927.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sxc-RB | 129..3305 | 17..3195 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:49:28 Download gff for
BO32927.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sxc-RC | 212..3388 | 17..3195 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:18:19 Download gff for
BO32927.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sxc-RC | 212..3388 | 17..3195 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:18:19 Download gff for
BO32927.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5325804..5325999 | 832..1027 | 99 | -> | Plus |
| 2R | 5320419..5320615 | 635..831 | 100 | -> | Plus |
| 2R | 5307499..5307652 | 17..170 | 100 | -> | Plus |
| 2R | 5316269..5316479 | 171..381 | 100 | -> | Plus |
| 2R | 5320008..5320191 | 382..565 | 100 | -> | Plus |
| 2R | 5320248..5320316 | 566..634 | 100 | -> | Plus |
| 2R | 5326063..5327791 | 1028..2756 | 100 | -> | Plus |
| 2R | 5327848..5328028 | 2757..2937 | 100 | -> | Plus |
| 2R | 5329010..5329265 | 2938..3195 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:49:28 Download gff for
BO32927.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1207753..1207821 | 566..634 | 100 | -> | Plus |
| arm_2R | 1195004..1195157 | 17..170 | 100 | -> | Plus |
| arm_2R | 1203774..1203984 | 171..381 | 100 | -> | Plus |
| arm_2R | 1207513..1207696 | 382..565 | 100 | -> | Plus |
| arm_2R | 1207924..1208120 | 635..831 | 100 | -> | Plus |
| arm_2R | 1213309..1213504 | 832..1027 | 99 | -> | Plus |
| arm_2R | 1213568..1215296 | 1028..2756 | 100 | -> | Plus |
| arm_2R | 1215353..1215533 | 2757..2937 | 100 | -> | Plus |
| arm_2R | 1216515..1216770 | 2938..3195 | 99 | | Plus |
BO32927.pep Sequence
Translation from 16 to 3211
> BO32927.pep
MHVEQTRINMQSQGQSHQLPSAAHILLDQNPNSTGSNLVVKQNDIQSLSS
VGLLELAHREYQAVDYESAEKHCMQLWRQDSTNTGVLLLLSSIHFQCRRL
DKSAQFSTLAIKQNPVLAEAYSNLGNVFKERGQLQEALDNYRRAVRLKPD
FIDGYINLAAALVAARDMESAVQAYITALQYNPDLYCVRSDLGNLLKALG
RLEEAKACYLKAIETCPGFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD
PNFLDAYINLGNVLKEARIFDRAVAAYLRALNLSPNNAVVHGNLACVYYE
QGLIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQVKEAEDCYNTALR
LCSNHADSLNNLANIKREQGYIEEATRLYLKALEVFPDFAAAHSNLASVL
QQQGKLKEALMHYKEAIRIQPTFADAYSNMGNTLKELQDVSGALQCYTRA
IQINPAFADAHSNLASIHKDSGNIPEAIQSYRTALKLKPDFPDAYCNLAH
CLQIVCDWTDYDIRMKKLVSIVTEQLEKNRLPSVHPHHSMLYPLTHDCRK
AIAARHANLCLEKVHVLHKKPYNFLKKLPTKGRLRIGYLSSDFGNHPTSH
LMQSVPGLHDRSKVEIFCYALSPDDGTTFRHKISRESENFVDLSQIPCNG
KAADKIFNDGIHILVNMNGYTKGARNEIFALRPAPIQVMWLGYPGTSGAS
FMDYIITDSVTSPLELAYQYSEKLSYMPHTYFIGDHKQMFPHLKERIIVC
DKQQSSVVDNVTVINATDLSPLVENTDVKEIKEVVNAQKPVEITHKVAEL
PNTTQIVSMIATGQVQTSLNGVVVQNGLATTQTNNKAATGEEVPQNIVIT
TRRQYMLPDDAVVYCNFNQLYKIDPQTLESWVEILKNVPKSVLWLLRFPA
VGEQNIKKTVSDFGISPDRVIFSNVAAKEEHVRRGQLADICLDTPLCNGH
TTSMDVLWTGTPVVTLPGETLASRVAASQLATLGCPELIARTREEYQNIA
IRLGTKKEYLKALRAKVWKARVESPLFDCSQYAKGLEKLFLRMWEKYENG
ELPDHISAVASFLDH
BO32927.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:28:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sxc-PB | 1059 | CG10392-PB | 1..1059 | 1..1059 | 5517 | 100 | Plus |
| sxc-PA | 1059 | CG10392-PA | 1..1059 | 1..1059 | 5517 | 100 | Plus |
| sxc-PC | 1059 | CG10392-PC | 1..1059 | 1..1059 | 5517 | 100 | Plus |
| CG4050-PB | 926 | CG4050-PB | 456..903 | 63..542 | 292 | 23.9 | Plus |
| CG4050-PA | 926 | CG4050-PA | 456..903 | 63..542 | 292 | 23.9 | Plus |
