BO32929.complete Sequence
4459 bp assembled on 2012-07-30
GenBank Submission: KX799983
> BO32929.complete
GAAGTTATCAGTCGACATGAGCGGATCCAATGCAAAGTCCTCGGGGACTG
GCTTCGGCAGCCACATTCCCAGCATCGAGGAAAAGAACAAGCAGATCCAG
CAGGAAACCATGATGGAGAAGCTGCGGGCCAAGTACCGGAACAAGCCAAA
GAGCTACGAGGAGATCAAGAAGTCGGTGCGTATGTACTTTATCGAGAAGC
ACTACCCTCTGGACCCCCTGTGCAAGGCCACGCTGCAGTCGGCGCTGGAC
AAGTTGCAGCACTACATCAAGGTCACGTCACGCCACGGCCTTGTGGAGCG
TTTGGAGAGCCTCTCGCGCCAGTTGGGCCTCAAGTTCATGGAGGACCAGC
AGCTTCTCTTCATATCAACGGACATGTTCTACGTAGAGATCCTGCTGGAC
GCCGCCGGCAGTCTGTCGGACGTCAAGGTGCACCACGAGTGCAAGATCGA
GCAACAGTCCAGCGAGCTAGTGGCCTGCCTCAAGTCTGGCGACTTTGCAG
ACTTTACGGTTCAACTCGAGGGTCTGTCCTCCATTTACCAGCTGAATGCC
GAGCCCAAGGTGAAAAAGAAGGCGTTTGTAGCGCTTCAGGCCATGGAGAC
GGATATCCAGAGCCTATACCAACTGCACCTGCAAGGTCACTCCGGAGACA
GCTACTCACTTATGACAAGTTCATCGGTGGGTCTTGTGCTGCCCCGTCGC
GGTGGCCATCCTATGAGGCTTACTTATTTCTGCCCGCCGCTCCACCTTCC
CGAAGGGGATCCCAAACTGGCCAGCGGCGATTTCACCATCGACCAGGTAA
TGCGAAGCAGCTACGGACTGAGTGCCACTATCAATCTCGAAGGCTCATCA
GCCAACAAACTGCAGACTTTGCCAACGGTGACTTTGGTCCGCGATGCCCA
AACGGGGTTGGAGGTTCCCACCTATGCCCAACTTAACCAGAACAACTCGC
TGCTGATGCCGGCCACGTTTGTGCTTCGGCTGAACAAACCCATGCCTGTT
TGCCTGGAATCACTAAAGGCTCTCGGTCTGCCCGGTCTAGACTCAGTTGC
CACTCCTCCTGGTCCGCCCACCACAGTGCTTAATCTCATAGTACAAACTG
CATCGAAGCAGGCCATTAAGAACACACAGCGCGGCCTGTATGTGAATTTA
CCTAAAGAGACGCACTGCTATTTCTTTACCGACAACCGCAAACTGCAGGG
AACTCTGGTGTCATCACTGCCCTTCACTGAACCCGCCCAGGTTCCGCGAA
TCGTGGCGTTCCTCAAGAAACAAGCTCTCTTCTACACCCTGCTCGCAAGC
TGTGTTCGTGAGCAGCAGAAGCAGTATAATGATATGGACAGCACTGTGAT
ACTGGAGGTAACCGCCGTTTCATTTAATCAAATCACGGTTGAGCTGCAGC
ACCCGTACGAAGAGTCGCTGGCCACTGTGGATTTTCTGCTTGAGGATGGT
CAGCCCACGTGCAGCGTTTACTGTCTGACCAACGAATACGAGCTGCTGTC
CCAGAAGTTAACCCGCACCGCGCGCAAAGTGGTATCCATTCCGATGGTAA
TCTACAAGTTGCTTAAGTGCTGGGATGAGGAGCACGAATTCAAACTGCAT
GGCGCGATTGGACCTGGATCTGGTTCTGGAGCAATCGGAGGTGGAGGCAT
GAGTGGTGGTGGACCTGTCTCAGGAGTAGGCAATAACTTTAGCCAGTTTT
CAATGGATACGCCGACGCCTTCCGATGGAAGCCTACCCGGAGGTGGCTTC
GCCAACATTAACAACCTTAAAATGGATGCGAAGTCGCGATCTCTAGCGGA
TGCTTTTGCCGCTTCTACTTCGGCAGCAGCGGCCATAGCGGGTTTGATCA
ATCTTAAGCGGGAAACCGATCCACAGTCTGGTAGTTCGGCCAGTGGCACC
ACGGTCAGCGGCAGCTCCAGCTCATCCGGCTCCGCCAAGACGAGTGACCA
TGACATTGCTGACAAGTACAAAAATATCTGGAAGGACAAGACTCCAAATT
TGAAGCATTGCGTCAGCATCACCCCCATCCCAGGAGATGGAAAGTCTGGA
TCAGCTGGGGGAGTGTCCGGGGTCGAGGTACAGCGAACGGGTGGTATCGA
AATTATTCCATTGAATGCCCAGGCGGCTATAGCCGGAGGAGGTGTTACAG
CCTCATCCAGTGCCACTCCCACGACTATAACTATTACCCCAATAACTGGC
AAGGATCCCAGTAAGGACTCAACCAAAAAAAGTACCGCTGCTTCAGCTGG
AGTAGGTGTGGCCGCAAAGCGTCCCCACGAAAGTAGCACAAGTAGTTCGT
CTACGTCCGGTTGTAGTGGTTCTGGCAGCTCCATGTCGTCTTCAGCCAGC
AGCGGCTCTTCAGATACGCAGAAGGAAAAGAAGCGCAAGAAAAAGCGCGA
CGATTCGCCCATGGGACCGCCGGAGAAGATCTATTCTAGGCAAAACTCGC
CTGCAGGTGGCGCAGATGCTTCCGCAACTGGTGGAGTGGTTCGCAAGTTT
TCCTCTCCCTCGTCGTCACCCAAAGCTGGTGGCGGTGGACAGGGTCTAAT
GGCCGGAGTGCCGACTGCCCGTCCCAGCCCCAAGCACTCTCCCGTGTATA
GCAGTCCCAAGCACAACACCGCCTCCAACAGCCCGAAGTCGCCGTTTGGC
ACACACTCACCCAAACACGGCTCTTCCGGAAAGCCGAGCATGTCAACGCT
TAAAAGTGCAGCTACAGCTGCCACCATCTTAAGTCCCAAGGGCGATAAGT
CCTCGTCAGCTGTGGGTAACACATCTTCGGGACCATCCGCCTCCTCAGGA
TCCAGCGGAGCTACTGGCCTGGTGAGGTCATTTGCCAGCGTTGGAGCTCC
GCCTCCACCACCTCCAATTCCTCCATTAGCGAGCTCGAGCGGATCTATCA
GCAGCAGCCAGAGTTTAAAGAAGGAGAAAACCTCTTCGGCATCCGGTTCC
AGTTCCACATCATCCTCGGCAACTGCAGGTGTCGCATCTGGCGGAGGTAT
TTCACCGGCAAGTGTGGCTGCTGCAGTAGCTGCCCTGAAATCCTCACAAC
AGCAGATGAAGTCAGTCGCCAGTCTTTCGCATCTGGCGGCGGGCGGGGGA
CTGGGTAGCTATGCGGCCCCGTCGGGAGCGGGAGCATCTGGTGCAGCCGC
AGTGGTGGTGGGAGCAGGAGCTGGCGCTGGAGCGGGGGCCTCCGGACTGG
AGCTGAGTGCCCTGCGCAAGGGCATGGCGGGAGGTGCGGTTAGTTTGATG
ACGTCGACGGCAGCTTTAGCGCCAACAATTCCGGCACCAACAACAACAGT
GGCAGCGGGCTCGGCAGCGTCATTGGTGTCTCCAGTCTCAGCGGTAGTGG
GTCAGGGGCAGGAAACAGCGGGAGCAGCGGCAGCAGCAACGCTGGCAACA
GCAACAATTCTGCAGCAGCAGCCACAGCCGGGAGCAGCGCCAACTAGTAG
CTGCTTAACCACCAGCGGGGGCAGCAGCGACTCCGCCGGGAGCATCAATC
CGGCCGGAGCCTCCACGGAATACATGGTGAAGCCCAGCAGCCAAGAGGGC
CTCAAGCTGACCATCAACAAGACGGGAAGCAGCAAGAGCTCCGGCACCGG
CTCCGGCTCTAGTTCCTCCTCTGGCCTCCAAGCGAAGGCAAAGAGCAGCA
GCAGCGGCGCCACGAGCTTCGCTGGGTCCACTGGATCCACGAAGAAGCAG
CATACCGGACTCAAGCCGGGCGTTAACAGCGGACCCGCTTCCAAGAAGGC
CACCGCAGCGGTCTCGTCCGCCACGGCATCATCCAGCAAGCATTTCTTCC
AGAAGGCAAACTCCTCGGGCAATCTCAGCAGCAAGCTCAGTGGGTCGGGA
TCAGGTGGCGGAATTCCGCTGACTAAGAGCAACAGCACTAACTCCTTCCA
AGAGCACAATGCCCCCAGGCGGCGTCCCAGCATGGGAGCCTTGGCTAGCG
GCAGCAGTGGAGGAGGCAGCGGGCAGCGAAAGTTAGGCTCCGCTTCGGGA
GGAGGCAGCGGATCTTCGGGGTCGGTATCGCCGGCCCTTAGCGGCTCAAT
GTCGCAGCCACCGCCGCGATTCGATCACCACACGGATATGATGACCATCC
TCCAATACGCTTCTCCGACAATGGCCGCAAGCATGGAAGGCTTCATCAAG
GGGCTCCACAACAAATTCCAGATCCCAAAGTTATCGCAGAGAGGAAGCGG
AGGCAATACAACCAGTGGACGCAGCACGCCAAGTGGCAGTTCAGAACCGG
CTTTAGCGGGAACATCATCTTCGATATTAGGACCTATTGCCAGCTCTACT
GGACTGACGGAGCCGGAAGCGAAGCCGCCGGTGCCTCCTTCGCAGTCTGG
CAATGAAGGACTGCTCAATCTTAGCAGCACGGCGGGTACACCATCGGCGG
ATGGGATAGATGAGGAGCTTTTGGCTAGCCTGGCTGGCGAAGCAAGCTTT
CTAGACCAT
BO32929.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:54:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MED1-RA | 4428 | CG7162-PA | 1..4425 | 17..4441 | 22125 | 100 | Plus |
| MED1-RC | 3426 | CG7162-PC | 1..3426 | 17..3447 | 17045 | 99.9 | Plus |
| MED1-RB | 3243 | CG7162-PB | 1..3228 | 17..3244 | 16125 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:54:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MED1-RA | 4962 | CG7162-RA | 152..4576 | 17..4441 | 22125 | 100 | Plus |
| MED1-RC | 4957 | CG7162-RC | 152..4571 | 17..4441 | 22015 | 99.9 | Plus |
| MED1-RB | 4185 | CG7162-RB | 152..3379 | 17..3244 | 16125 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:54:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21630927..21632840 | 3244..1331 | 9555 | 99.9 | Minus |
| 3L | 28110227 | 3L | 21632916..21634197 | 1331..50 | 6410 | 100 | Minus |
| 3L | 28110227 | 3L | 21628711..21629914 | 4441..3238 | 6020 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 11:54:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2786..3011 | 3260..3476 | 190 | 57.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2381..2533 | 3251..3406 | 142 | 56.4 | Plus |
| F-element | 4708 | F-element F 4708bp | 418..545 | 3285..3424 | 131 | 60.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2436..2484 | 3258..3306 | 119 | 71.4 | Plus |
BO32929.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-30 09:39:50 Download gff for
BO32929.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED1-RA | 162..4586 | 17..4443 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:44 Download gff for
BO32929.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED1-RA | 152..4576 | 17..4443 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:53:18 Download gff for
BO32929.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED1-RA | 152..4576 | 17..4443 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:53:18 Download gff for
BO32929.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21628707..21629913 | 3239..4443 | 99 | <- | Minus |
| 3L | 21630933..21632839 | 1332..3238 | 100 | <- | Minus |
| 3L | 21632916..21634196 | 51..1331 | 100 | <- | Minus |
| 3L | 21634262..21634295 | 17..50 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:44 Download gff for
BO32929.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21621807..21623013 | 3239..4443 | 99 | <- | Minus |
| arm_3L | 21624033..21625939 | 1332..3238 | 100 | <- | Minus |
| arm_3L | 21626016..21627296 | 51..1331 | 100 | <- | Minus |
| arm_3L | 21627362..21627395 | 17..50 | 100 | | Minus |
BO32929.pep Sequence
Translation from 16 to 4459
> BO32929.pep
MSGSNAKSSGTGFGSHIPSIEEKNKQIQQETMMEKLRAKYRNKPKSYEEI
KKSVRMYFIEKHYPLDPLCKATLQSALDKLQHYIKVTSRHGLVERLESLS
RQLGLKFMEDQQLLFISTDMFYVEILLDAAGSLSDVKVHHECKIEQQSSE
LVACLKSGDFADFTVQLEGLSSIYQLNAEPKVKKKAFVALQAMETDIQSL
YQLHLQGHSGDSYSLMTSSSVGLVLPRRGGHPMRLTYFCPPLHLPEGDPK
LASGDFTIDQVMRSSYGLSATINLEGSSANKLQTLPTVTLVRDAQTGLEV
PTYAQLNQNNSLLMPATFVLRLNKPMPVCLESLKALGLPGLDSVATPPGP
PTTVLNLIVQTASKQAIKNTQRGLYVNLPKETHCYFFTDNRKLQGTLVSS
LPFTEPAQVPRIVAFLKKQALFYTLLASCVREQQKQYNDMDSTVILEVTA
VSFNQITVELQHPYEESLATVDFLLEDGQPTCSVYCLTNEYELLSQKLTR
TARKVVSIPMVIYKLLKCWDEEHEFKLHGAIGPGSGSGAIGGGGMSGGGP
VSGVGNNFSQFSMDTPTPSDGSLPGGGFANINNLKMDAKSRSLADAFAAS
TSAAAAIAGLINLKRETDPQSGSSASGTTVSGSSSSSGSAKTSDHDIADK
YKNIWKDKTPNLKHCVSITPIPGDGKSGSAGGVSGVEVQRTGGIEIIPLN
AQAAIAGGGVTASSSATPTTITITPITGKDPSKDSTKKSTAASAGVGVAA
KRPHESSTSSSSTSGCSGSGSSMSSSASSGSSDTQKEKKRKKKRDDSPMG
PPEKIYSRQNSPAGGADASATGGVVRKFSSPSSSPKAGGGGQGLMAGVPT
ARPSPKHSPVYSSPKHNTASNSPKSPFGTHSPKHGSSGKPSMSTLKSAAT
AATILSPKGDKSSSAVGNTSSGPSASSGSSGATGLVRSFASVGAPPPPPP
IPPLASSSGSISSSQSLKKEKTSSASGSSSTSSSATAGVASGGGISPASV
AAAVAALKSSQQQMKSVASLSHLAAGGGLGSYAAPSGAGASGAAAVVVGA
GAGAGAGASGLELSALRKGMAGGAVSLMTSTAALAPTIPAPTTTVAAGSA
ASLVSPVSAVVGQGQETAGAAAAATLATATILQQQPQPGAAPTSSCLTTS
GGSSDSAGSINPAGASTEYMVKPSSQEGLKLTINKTGSSKSSGTGSGSSS
SSGLQAKAKSSSSGATSFAGSTGSTKKQHTGLKPGVNSGPASKKATAAVS
SATASSSKHFFQKANSSGNLSSKLSGSGSGGGIPLTKSNSTNSFQEHNAP
RRRPSMGALASGSSGGGSGQRKLGSASGGGSGSSGSVSPALSGSMSQPPP
RFDHHTDMMTILQYASPTMAASMEGFIKGLHNKFQIPKLSQRGSGGNTTS
GRSTPSGSSEPALAGTSSSILGPIASSTGLTEPEAKPPVPPSQSGNEGLL
NLSSTAGTPSADGIDEELLASLAGEASFLDH
BO32929.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:16:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MED1-PA | 1475 | CG7162-PA | 1..1475 | 1..1475 | 7410 | 100 | Plus |
| MED1-PB | 1080 | CG7162-PB | 1..1076 | 1..1076 | 5434 | 100 | Plus |
| MED1-PC | 1141 | CG7162-PC | 1..1140 | 1..1127 | 5432 | 95.3 | Plus |
| sbb-PE | 929 | CG5580-PE | 9..805 | 598..1471 | 331 | 23.8 | Plus |
| sbb-PC | 929 | CG5580-PC | 9..805 | 598..1471 | 331 | 23.8 | Plus |
| sbb-PE | 929 | CG5580-PE | 228..857 | 530..1282 | 268 | 22.5 | Plus |
| sbb-PE | 929 | CG5580-PE | 323..889 | 528..1095 | 246 | 24.7 | Plus |
| sbb-PE | 929 | CG5580-PE | 176..806 | 535..1123 | 240 | 24.2 | Plus |
| MED1-PC | 1141 | CG7162-PC | 540..1140 | 671..1251 | 224 | 25.5 | Plus |
| MED1-PB | 1080 | CG7162-PB | 540..1076 | 671..1242 | 197 | 23.5 | Plus |
| MED1-PC | 1141 | CG7162-PC | 546..1138 | 813..1419 | 196 | 24.6 | Plus |
| MED1-PB | 1080 | CG7162-PB | 546..1071 | 813..1346 | 178 | 24.3 | Plus |
| MED1-PB | 1080 | CG7162-PB | 531..991 | 1048..1477 | 164 | 23 | Plus |
