BO32932.complete Sequence
3220 bp assembled on 2012-07-30
GenBank Submission: KX796072
> BO32932.complete
GAAGTTATCAGTCGACATGGTAAAAAGAAAAAGTACTGCCGCGGCCAAGC
CCGTTGCAGAACCGATTCTCAGATATCCTCTCATATCCGAAAATGAGGTA
ATGGATCGAGAAGCTCGGTACATGAGCCGCCTTAATGATTTCACTGTTAG
TGCGGAGTTAGTCAAGGGTGCCCAACGCGATTTTTATAATCAGGAGGTTG
ATAGAATGTTCCGAGAACACTGGGAGCATCATTTGCGTTGTGATGGCCTG
CCACGTCCCTATCTTCCCGTCGAAGTACGAACTTTTATGTCCAAAATACG
GTTTTACGACGAGATTGAAACGAATAATTCAATGGACTGGACCTTGTCGG
TGGACGAACGCTCTATATTGACTCAGAATATCTTTAGGGTGGACAAAACG
CGACGTATGATGATGGTCAACAAAGATAATCCAGGCGAACACTATGACCA
TAACGTTCAGATGTGTTTGAATGCATTGAAACAAATGGATGCAATGCTGG
ACAACGAGGCTGAAATGGTTCGAATGTCAGATAAAAGGCAAAAGGATGTA
ATTGAAGTTTACACCGAAGTCGAGGCGGAAATTGGTGATCTCTTTGATCG
CCTAACCTATCGAGTATTGAGCATGCAGGATGCTTATATGGAATCCAAGG
ATGGTCGAGTAGCTGTGTGGAGCTACACGTGTAACCCTTGGAGATTGGAT
TTGTGGGGACTGCGAAATGTGCCAATTATTTTTGATCAGTTGGAATTGCC
AGTAATGTTGGCCGAATTTAGTGCCACGAGTGTTGAAGTCCAGATACCAA
AGAGTGTTCTTAAAGATTGCGTAACTATTCGCAGCTTACACATGGATTTT
GATAACATTTCGCAAAACGCCAAGAGCTTCGAAATTGCCGTTAAGGCATC
GCTCAATTATCCAAACGCTGGGATAGTGGACATAGAGAATTCGGTGGTCA
ACGAATGGCACATGCAACTCGAAATACAGGAGGAGACATTGAATTTAATG
TTAACCAGGAGGCGAGAGTACGAGGACATGATGGAGCTCATCGCCGAGAA
AACGGAGCAGGCAGCTAAGGCTGCTAAACAAACTGACCCCGATAAGATGG
TCAAAATCACAATTCCAAAGGCACCAAAGGAACCGCCATATGTTCCGACT
GGCATGTTTCCCGACATCTATGAAGATTTTCTTAGAATAGAGGAAAGCCA
GTACTCTGGCTATCTCGATGAGGTATGCCATCCAAGGCACTTAGATATGC
AGCCGTTCGAAATAAATCTCAGGGACTACATCATGCTTGGTGGTATTTAC
AGCATTATGTTCATCCGACGACCTGACCAAACCCAGTTCGAACAGTTCAA
CATCGTATTGCACGAGGATGGACGGGTGGTTCACATACTGACAGAAATGA
AGGCCGATATACCGGTAGAGGCTGTACGGAAGTCAAATATAGGCAGGAAA
ACCAGGGAGACCTACCGGGGCACTAAAATCAAGCTGGAAGACGACGAACT
TCCATATTTTATTGTAACCCTTCAAGTGGCCGCGGATCTTTGCAAATGGA
GTGAGCCCGTGGTTTGCCATTTTATAACGGAGAAGGATTTTATTCCGACG
GATTACAAGCGCGAATCCTACTGGGTGCCGACCATGCAAAGTGTTATAAG
GCATTCGGAATATGCCGGTAGAAGTATGCTCAATTTAGGCAGTCAAATTT
CGGGTGATTCTGCAAATATATTTCGGCCCAGTCTTCGGTCCTTTCTGAGA
CAGAGTAAAGTCGGAGCGGCTCCGAAGCCCGGAGTTCCCATAGAGGACTT
CAAGCTGGAAAAAAAACTCAGCCATCTGGAAATTAGGACATTGGAAAAAT
ATTGTCTACCCCGGATCATATCATCGTTTAAGTTTCCCGTAGACTTTCGA
GATGAAAAACGAGAATTTATTAGGCAGGGCCCAAGGGCTTTGGTCAAGCG
TCCAGATGCAGAGGAAGTCGTTACTCAGGTTAAGACTTTAGACTTTAACT
ATAATTCCCAGGTGCTGGGTCCGGAACGGATGTACCCCTACTTTCCACAA
ATGGATCCCATTAAGTATCCCATTCCCTTCGATGATTTGGAACCAGGTCC
AGTAAACCCAACAAGTGCGCTGGAACTTCTAAAAACATTTGACAACATTA
AATCGAAATATCAGGAAAAGCATATCGACTTAATAAGTCAACCCGACGAG
CAGGACAAGAAATCGAAGCAAAAAAAACTGGGCGTAAAGGAGGAGGATGA
TGTACCAGAAGCACAGATAGCAAAACGAAAATTTTCTAAGCTTGGTGACA
AAGTACGCTCATCTGTTAAGACGGACAGGATGGATCGAGTTACAGTCGGC
TCAGACAAATCCTCAGTAAAAACTAACCCGATGAGCGAAGAACAAGTAAC
CCACTGGACAACTAAGTATGTCAAGGACGTCGTAATCGATAGAGAAACCA
ATAGCATTACGTTCAAGACAGATCGTCTGGGACTTTTGGGATTGGCCTTT
AAGCGGTACGAGCATTTTCCATTTCGTAATTGGTCACTGCAGCCAAATGA
GGAAAATCCTGATGAGATCATACTATGCGTAGACACGTTCCACGTTCGCA
TCTTTTTCTATATCACGTGTAAGGGAGTTAGGGGCTATGTGACTGATCTG
AGCAAGGGTTACACGGCCAAGCCGATTAAATATCTGGAGATTGTGGAACC
AATATCAGACTTTCGGCAAATGCGTCAGATATTTATTAGCAAAAACATCA
ATATATTTGCCGAGAACGATGCTAGTTTCTATATCGAAAATGGCTACTTT
TCAATGAAACACGTGGCACTCGAGATGCACACCTACAATATTATGGCACT
GCATTGTAAATTGATGAAGTTCTACCGATCGAGCTGGAATCGTCTCGCCG
ATCGACGCGATATCATCATGGGCATGAAGATCGCCAAGGATAACTCTGAT
TATTCTGAGGTCACGATGCGCATTACACCGGAGAAAACCACGTTTGTTCA
GATTTCCGAAAATTGCTCAGATAAGGTGAATGTTATTGTGCTAAACTACA
TTAACACTTGGCGAAACATCGGCAACTTTACGGATCTACATCAGGCTATA
AATTCGATGGTGCCGAATGCCACAGAGGTGCGAAATAAGGATTCTATTCT
TTTATATTATGTTACTAGGATGCTCAAAGAAATACGTCTTCTAAGCTTTT
CGGCAAGCTTTCTAGACCAT
BO32932.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:54:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33286-RB | 3189 | CG33286-PB | 1..3186 | 17..3202 | 15930 | 100 | Plus |
| CG33287-RB | 3306 | CG33287-PB | 2558..3135 | 2457..3034 | 805 | 76 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:54:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33286-RB | 3294 | CG33286-RB | 42..3227 | 17..3202 | 15930 | 100 | Plus |
| CG33287-RB | 3434 | CG33287-RB | 2594..3171 | 2457..3034 | 805 | 76 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:54:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20971699..20972993 | 2556..1262 | 6475 | 100 | Minus |
| 3L | 28110227 | 3L | 20973190..20973706 | 1261..745 | 2585 | 100 | Minus |
| 3L | 28110227 | 3L | 20974064..20974455 | 558..167 | 1960 | 100 | Minus |
| 3L | 28110227 | 3L | 20971065..20971412 | 3073..2726 | 1740 | 100 | Minus |
| 3L | 28110227 | 3L | 20971469..20971640 | 2728..2557 | 860 | 100 | Minus |
| 3L | 28110227 | 3L | 20974506..20974659 | 170..17 | 770 | 100 | Minus |
| 3L | 28110227 | 3L | 20970879..20971007 | 3202..3074 | 645 | 100 | Minus |
| 3L | 28110227 | 3L | 20967098..20967382 | 3034..2750 | 525 | 78.9 | Minus |
| 3L | 28110227 | 3L | 20973766..20973867 | 744..643 | 510 | 100 | Minus |
| 3L | 28110227 | 3L | 20973926..20974011 | 642..557 | 430 | 100 | Minus |
| 3L | 28110227 | 3L | 20967693..20967789 | 2553..2457 | 230 | 82.5 | Minus |
Blast to na_te.dros performed 2014-11-28 11:54:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 3851..3967 | 2727..2847 | 118 | 62.4 | Plus |
BO32932.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-30 09:39:51 Download gff for
BO32932.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33286-RB | 42..3227 | 17..3204 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:47 Download gff for
BO32932.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33286-RB | 42..3227 | 17..3204 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:53:19 Download gff for
BO32932.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33286-RB | 42..3227 | 17..3204 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:53:19 Download gff for
BO32932.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20973926..20974011 | 557..642 | 100 | <- | Minus |
| 3L | 20973190..20973706 | 745..1261 | 100 | <- | Minus |
| 3L | 20970877..20971007 | 3074..3204 | 98 | <- | Minus |
| 3L | 20971065..20971409 | 2729..3073 | 100 | <- | Minus |
| 3L | 20971469..20971640 | 2557..2728 | 100 | <- | Minus |
| 3L | 20971699..20972993 | 1262..2556 | 100 | <- | Minus |
| 3L | 20973766..20973867 | 643..744 | 100 | <- | Minus |
| 3L | 20974066..20974454 | 168..556 | 100 | <- | Minus |
| 3L | 20974509..20974659 | 17..167 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:47 Download gff for
BO32932.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20963977..20964107 | 3074..3204 | 98 | <- | Minus |
| arm_3L | 20964165..20964509 | 2729..3073 | 100 | <- | Minus |
| arm_3L | 20964569..20964740 | 2557..2728 | 100 | <- | Minus |
| arm_3L | 20964799..20966093 | 1262..2556 | 100 | <- | Minus |
| arm_3L | 20966290..20966806 | 745..1261 | 100 | <- | Minus |
| arm_3L | 20966866..20966967 | 643..744 | 100 | <- | Minus |
| arm_3L | 20967026..20967111 | 557..642 | 100 | <- | Minus |
| arm_3L | 20967166..20967554 | 168..556 | 100 | <- | Minus |
| arm_3L | 20967609..20967759 | 17..167 | 100 | | Minus |
BO32932.pep Sequence
Translation from 16 to 3220
> BO32932.pep
MVKRKSTAAAKPVAEPILRYPLISENEVMDREARYMSRLNDFTVSAELVK
GAQRDFYNQEVDRMFREHWEHHLRCDGLPRPYLPVEVRTFMSKIRFYDEI
ETNNSMDWTLSVDERSILTQNIFRVDKTRRMMMVNKDNPGEHYDHNVQMC
LNALKQMDAMLDNEAEMVRMSDKRQKDVIEVYTEVEAEIGDLFDRLTYRV
LSMQDAYMESKDGRVAVWSYTCNPWRLDLWGLRNVPIIFDQLELPVMLAE
FSATSVEVQIPKSVLKDCVTIRSLHMDFDNISQNAKSFEIAVKASLNYPN
AGIVDIENSVVNEWHMQLEIQEETLNLMLTRRREYEDMMELIAEKTEQAA
KAAKQTDPDKMVKITIPKAPKEPPYVPTGMFPDIYEDFLRIEESQYSGYL
DEVCHPRHLDMQPFEINLRDYIMLGGIYSIMFIRRPDQTQFEQFNIVLHE
DGRVVHILTEMKADIPVEAVRKSNIGRKTRETYRGTKIKLEDDELPYFIV
TLQVAADLCKWSEPVVCHFITEKDFIPTDYKRESYWVPTMQSVIRHSEYA
GRSMLNLGSQISGDSANIFRPSLRSFLRQSKVGAAPKPGVPIEDFKLEKK
LSHLEIRTLEKYCLPRIISSFKFPVDFRDEKREFIRQGPRALVKRPDAEE
VVTQVKTLDFNYNSQVLGPERMYPYFPQMDPIKYPIPFDDLEPGPVNPTS
ALELLKTFDNIKSKYQEKHIDLISQPDEQDKKSKQKKLGVKEEDDVPEAQ
IAKRKFSKLGDKVRSSVKTDRMDRVTVGSDKSSVKTNPMSEEQVTHWTTK
YVKDVVIDRETNSITFKTDRLGLLGLAFKRYEHFPFRNWSLQPNEENPDE
IILCVDTFHVRIFFYITCKGVRGYVTDLSKGYTAKPIKYLEIVEPISDFR
QMRQIFISKNINIFAENDASFYIENGYFSMKHVALEMHTYNIMALHCKLM
KFYRSSWNRLADRRDIIMGMKIAKDNSDYSEVTMRITPEKTTFVQISENC
SDKVNVIVLNYINTWRNIGNFTDLHQAINSMVPNATEVRNKDSILLYYVT
RMLKEIRLLSFSASFLDH
BO32932.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:16:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33286-PB | 1062 | CG33286-PB | 1..1062 | 1..1062 | 5551 | 100 | Plus |
| CG33287-PB | 1101 | CG33287-PB | 14..1101 | 22..1062 | 2603 | 49.2 | Plus |
| CG12983-PD | 1104 | CG12983-PD | 1..1104 | 1..1062 | 1836 | 36.8 | Plus |
| CG12983-PF | 205 | CG12983-PF | 1..204 | 1..208 | 342 | 35.7 | Plus |
| CG12983-PC | 187 | CG12983-PC | 1..179 | 1..183 | 282 | 34.1 | Plus |
