BO32941.complete Sequence
2986 bp assembled on 2012-07-30
GenBank Submission: KX796139
> BO32941.complete
GAAGTTATCAGTCGACATGGAGTCGAAACGCTCGAAAAAAGGACGCAAAT
CTCGGCCATCTGAGTCCGAGCATCCATCTAACCAACAGCAGGAGCAGCAG
CCACATCACCATCATCCCTGGGACGAAGACCCTTCGGCAAAGAGTCCCCA
AGCAAATAGGGCAATTCCCAGCACGGGCACAGCACTGACCCGCTTCCTGA
CCTGCATGGCACCAGTGATTGTGTCGCTACCTGGCGCTGGAACTGGCCCC
ACTGAGCAGCCGACCATACTACTGATCAACGGCATCGCCAGCGATTCCCA
GCTAGAGGATAAGCAGTCCAAAGCAGCCGCCTTAAAGTTAGCTCTCGATA
ACAACAACAGCGAGGCAACAGCACCAGCACCAGCCCAGCCACACCAAGTT
CCCACCACTCCGGGTGGCTCGCATCTCCTGGACTTCGAGTCGCATCTCAT
CGAGAGCATTGCCGACGAGGCCAGTGGCGTTGGGATCAGGGAACTAACTC
CGTTCGAGCAAGAATTGCAGCGGGGCACCTCCAAGGCGGGCACCAATGAC
ACAGACCCAGTCATAGAGGTAGAACCAGCTGGTGTTAGGACCAAACAGCC
TGTGGAAATCTCACCGCCGGCACATCAAATCGCCGAGGTTGACGAGACGG
CCACTCCGTCGGAGGAAGTACGTCGCACTGCCGAGCAGCTGGTGGATGAG
ATCGAACAGGAGCTGATCCAGGCACTCAGCCGGGATGTAGACGAGGCGCA
GCGCGTGCACGAGGATCAGGTCCAGCGAGATCGCGACGAGATCAGCGCAC
TCACTCAACAGGTCGAAGTCCAGTTGAATGAGCTGACCGGTATCCTTAAA
AACAAGCCCCAGGCGGAGATTGTCTTGGAACTGCCGGCGGAGGAGGAGGA
GGAGCAGAAGCCGAAGCCATTTGTCGCTGCTCCCAGTGAACTGAAGCTCG
TGGAGGTACCCACTCCCAAAACTGAGGCTGAGGAACAGGAACGCAAGGAG
TTCATCGACTCACTGCCCCAAATCGAGCAGAATCGCCTGCAGGGAGTCAG
TGGATCCGAGGAGACGGATGCTCAAAAACTATCGGCAGACTGCAAGAGGG
AGTACTACCAATCGCTGAAGAAGTACCTCCTGCACAGCAGCCAGGAGAAG
CCGCCAGTGCCACTGCAAACATATCGCTGGGAGGACCTCAAACGAGCCAA
GGAACGGGGCGGCTATCCCTGGACACATTTGTACAAACGCCCACTGGGAC
CCGATGAGCAGCCGGAAATTGTGCTGCTCCTGCGAAAGTCCCAGGAACTG
CGTTTCAAGTCCGAGTCTCCCAAGTCCCTGAAAAAGGTACGCTACGACGA
GCAGGTGTTGGTGAAGGAGACCGAACGCTACATACAGGACCTTTCCGAGG
ACGAGGCGGTAGCCACAACCACCGACGACAGCAGCGAAGAGTCCTCCGAT
TCAGAGACCGAATCGGAACGTGATCAGCACAACGAAGACGCTCTGAGTGA
GTGCATCTCCTGTGTTTCCGACTCCGTGCTAGCGGTTGGAGGACACGCCC
GACCACGTAAGACGAATCGGCTGGCCCACATCCGTGACCTCATACGGCGC
AGGCGCAGCGGACGCACCCACGAGGACGCCCAGTCACTGCCCGGCAACTC
CGCTAATCCCAGTCGACAGAGCAGCGTTCACGAACTAGCCCCGCCGCCGG
GATCCCTAATTCCCAACGCCGATAAGCCTCCGAAGTCCAGCAAACCCAAG
CAAGGATTCGACATCATGAAGAAGCTGAAGAGTCTGGCCGAGCGCCAGAA
GAAACGGCTGAACATTAAGAGGATCACCCTGAAGAAGGACGAGAAAATCG
TTCTCGGCGAGCAGCAGAAGATTATGAAGCTAAAAGCCTCACCCAAGTCG
GATCGCGGTGAGATTCCTCACTTCATCGAGAAGCAGGACTCCGACGAAAT
CCTGGAACTGGTGGAGTACGATGAATCGCCATGCCGCAAGCGAACCAAGG
AGGAGCTACTGGAAGATCAGCCCAGTGGCAGTGGAAGAGTGCCTGAACCC
GATGAGATCATCGAGCTGCCTGTGGTCAAGACTGAGATAGAGGCTCCCAC
AGTGGAAGTCACCGAGCCTGCAGAGGAAAAAGTGGATCATAAGGAAGAAA
AGGAATCGGAAGCAGAGGAGGACCCGCCCAAGAAAACACCTCGCATTCGG
CGGGAGCATGTATACGAAGAGATTGGCCAGGCTGGATCACAGGAGCTTGT
GAATCAGCCAATCCTGGAGCTAGAATCTCTAAAGAAATCTCTGACGCGTC
AGGACAATCTCGCCATCGATGAGATCGAGGCGGCCAAGGCAGTGCCGCTG
GATCGCATGGGCAGCAGCGAGGAGGAGCAGGTGACCGCCGGCAAACCCGG
TGCGCTATTTGCCCCCATCTCGTCCATAGACTCCACCTCGTCGGATGAAG
ATCGCGCCCGCCTGGCGCAACTTTCACCCGTTACCGAGGAGAGTGATGAA
CCCATGGACATCAGTCCAGATCTGCGTCCATCCATCAAGAAGGAAGCTTC
CCCAGCGCCCTCAGACAAAAAGGTCACCTTTTCTCACGTCGAAGACGAAG
CGGAACCGCATCGTGAGGATGTCGAGCTGCCTGAGGATGTCCTGGAGGCG
GCTACCAATGCCGCCAAATGGAAAAACGAGAGAGGCTCTAACCTATTTGA
CTTGCTCATGAAATTGTTACTAACCCTGTTGCCGGGAACTGGAGGTGGAG
CTGCGGGCGGAGGCAGAAGGCGCCGCCGGCTCACAAAGCACCACCGTGCC
CGTGCACCGCGATATCAAGACTACCACTACACTACCGAAACAGACACCAC
CGGTGCACCCACCAACACCATCCCACACAATCCCAGCACGTGGCGCATCC
GGGTGAAGCGATCCGCATCCTGGACGCTCTGCTGCTGCTGCAGCGCCGGC
GCCACCAATAAGTTTTGGGCAAGCTTTCTAGACCAT
BO32941.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:54:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43078-RD | 2955 | CG43078-PD | 1..2952 | 17..2968 | 14745 | 100 | Plus |
| CG43078-RH | 7623 | CG43078-PH | 1..2666 | 17..2682 | 13330 | 100 | Plus |
| CG43078-RB | 5130 | CG43078-PB | 1..2666 | 17..2682 | 13330 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:54:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43078-RD | 6099 | CG43078-RD | 435..3386 | 17..2968 | 14745 | 100 | Plus |
| CG43078-RH | 8664 | CG43078-RH | 333..2998 | 17..2682 | 13330 | 100 | Plus |
| CG43078-RB | 5763 | CG43078-RB | 435..3100 | 17..2682 | 13330 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:54:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8587343..8588818 | 1207..2682 | 7380 | 100 | Plus |
| 3L | 28110227 | 3L | 8585970..8586957 | 221..1208 | 4940 | 100 | Plus |
| 3L | 28110227 | 3L | 8588928..8589215 | 2681..2968 | 1425 | 99.7 | Plus |
| 3L | 28110227 | 3L | 8579513..8579624 | 17..128 | 560 | 100 | Plus |
| 3L | 28110227 | 3L | 8581761..8581855 | 127..221 | 475 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 11:54:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 830..874 | 348..393 | 119 | 76.1 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 6548..6628 | 34..114 | 116 | 65.1 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 8004..8084 | 34..114 | 116 | 65.1 | Plus |
BO32941.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-30 09:39:52 Download gff for
BO32941.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43078-RD | 435..3386 | 17..2970 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:49 Download gff for
BO32941.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43078-RD | 435..3386 | 17..2970 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:53:21 Download gff for
BO32941.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43078-RD | 435..3386 | 17..2970 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:53:21 Download gff for
BO32941.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8579513..8579624 | 17..128 | 100 | -> | Plus |
| 3L | 8581763..8581855 | 129..221 | 100 | -> | Plus |
| 3L | 8585971..8586956 | 222..1207 | 100 | -> | Plus |
| 3L | 8587344..8588818 | 1208..2682 | 100 | -> | Plus |
| 3L | 8588930..8589215 | 2683..2970 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:49 Download gff for
BO32941.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8572613..8572724 | 17..128 | 100 | -> | Plus |
| arm_3L | 8574863..8574955 | 129..221 | 100 | -> | Plus |
| arm_3L | 8579071..8580056 | 222..1207 | 100 | -> | Plus |
| arm_3L | 8580444..8581918 | 1208..2682 | 100 | -> | Plus |
| arm_3L | 8582030..8582315 | 2683..2970 | 98 | | Plus |
BO32941.pep Sequence
Translation from 16 to 2986
> BO32941.pep
MESKRSKKGRKSRPSESEHPSNQQQEQQPHHHHPWDEDPSAKSPQANRAI
PSTGTALTRFLTCMAPVIVSLPGAGTGPTEQPTILLINGIASDSQLEDKQ
SKAAALKLALDNNNSEATAPAPAQPHQVPTTPGGSHLLDFESHLIESIAD
EASGVGIRELTPFEQELQRGTSKAGTNDTDPVIEVEPAGVRTKQPVEISP
PAHQIAEVDETATPSEEVRRTAEQLVDEIEQELIQALSRDVDEAQRVHED
QVQRDRDEISALTQQVEVQLNELTGILKNKPQAEIVLELPAEEEEEQKPK
PFVAAPSELKLVEVPTPKTEAEEQERKEFIDSLPQIEQNRLQGVSGSEET
DAQKLSADCKREYYQSLKKYLLHSSQEKPPVPLQTYRWEDLKRAKERGGY
PWTHLYKRPLGPDEQPEIVLLLRKSQELRFKSESPKSLKKVRYDEQVLVK
ETERYIQDLSEDEAVATTTDDSSEESSDSETESERDQHNEDALSECISCV
SDSVLAVGGHARPRKTNRLAHIRDLIRRRRSGRTHEDAQSLPGNSANPSR
QSSVHELAPPPGSLIPNADKPPKSSKPKQGFDIMKKLKSLAERQKKRLNI
KRITLKKDEKIVLGEQQKIMKLKASPKSDRGEIPHFIEKQDSDEILELVE
YDESPCRKRTKEELLEDQPSGSGRVPEPDEIIELPVVKTEIEAPTVEVTE
PAEEKVDHKEEKESEAEEDPPKKTPRIRREHVYEEIGQAGSQELVNQPIL
ELESLKKSLTRQDNLAIDEIEAAKAVPLDRMGSSEEEQVTAGKPGALFAP
ISSIDSTSSDEDRARLAQLSPVTEESDEPMDISPDLRPSIKKEASPAPSD
KKVTFSHVEDEAEPHREDVELPEDVLEAATNAAKWKNERGSNLFDLLMKL
LLTLLPGTGGGAAGGGRRRRRLTKHHRARAPRYQDYHYTTETDTTGAPTN
TIPHNPSTWRIRVKRSASWTLCCCCSAGATNKFWASFLDH
BO32941.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:16:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43078-PD | 984 | CG32352-PD | 1..984 | 1..984 | 5060 | 100 | Plus |
| CG43078-PH | 2540 | CG43078-PH | 1..888 | 1..888 | 4525 | 100 | Plus |
| CG43078-PB | 1709 | CG32352-PB | 1..888 | 1..888 | 4525 | 100 | Plus |
| CG43078-PK | 2464 | CG43078-PK | 1..893 | 1..888 | 4509 | 99.4 | Plus |
| CG43078-PL | 2514 | CG43078-PL | 1..862 | 1..888 | 4331 | 96.8 | Plus |
