BO32960.complete Sequence
2071 bp assembled on 2012-07-30
GenBank Submission: KX799652
> BO32960.complete
GAAGTTATCAGTCGACATGTCGCTGCCCAACGAACAGACAAACTTGCCGC
ACAATCCCAGCCAACCAGCATCCGCAGACACACAGACACCAGCCACGGCA
ACAGGAACCACAACACCATCCACACCAACACCATCCACAAGAACCACACA
ACCAAATGAGCTGAAACACCGCCTGACGCCACTGAATGTGCGTCGTTTAT
CGGGCTACGTTAATCCGCAAGCGATCAGCGATAATGCTGGCGATGATCCC
CCGCCCACCACCATTAACATTGGCCTCTTCAACAACAATAACAATAATAA
TACAAATAATAATAATAATAATAACAACAACAACAACAACACAGCATCAA
CAACGCCACCATCTGCATATGCCACACCACCAATATACCAACAACAGTTG
TCCACACTGACAGCAACAACACCGCTAGATGTGGCACCGGATGATAAATA
CAGATTGTTTACCATTTTCAATGGAAACGATCCCGACAATGAGAAATTGT
CGGGCCTACCACATTCGACAACCGGTTCACTAAGCTCAATCATCACGACG
TCCATAGCATCCTCCGAACCGGATCCTGGAGCGGTGAGCGGCGGCGGCGG
CGGCGGCGGCGGCGGCGGCGGCGGCGGCGGAATAGGAGGAGCAGGTGGCG
GCGGCGGCGGCGGCGGAGGCAATGGCGGTATCGGATCGGGTGCCCTGGTG
GCAGCGGATGCCTCCAGCATTGCCGGCATCAATGGCAGCTCCGAGGAGAA
GTTGGCGCTCAATCGACCCGGCATCAAGCAGGAGAAGTGGACAACTATCC
TACTGCAGGTATCCATTCCGTTCTTTCTGGCCGGGATTGGTACCATCGGA
GCTGGCATTGTCCTGGGACGCGTTGAGAAATGGTATGTCTTCAAGAACGT
AAGCGAGCTGTTCATCCTGGTGCCGGCACTTTTGGGTCTCAAGGGCAACC
TGGACATGTGCCTGGCATCGCGTCTCTCCACGCAAGTGAATCTGGGCAAC
ATGACCAGCAGACAGGGCGTAATACGGATGATAGTGGGGAACATAGCACT
GGTGCAGGTCCAGGCGACGGTGGCCTCCTTTCTGGTGGCCATGTTTGCGG
TGAGCGTGGGCGCGGCCATGACCGGTGACTTCTATTTCGAGAACATGATG
CTGCTGACTGCCTCGGCCATGTTCACGGCCACCTCGTCGTGCTTTGTGCT
GGACTTCGTTTTGGTGGCTGTAATCCTGTTCTCGCAGAAGTACCGCCTCA
ATCCGGACAACCTGGCCACACCGTTGGCCGCCTCCATTGGTGACGTGGTG
TCCATCAGTTTGCTCTCCTTTATCGCCTCGCTGCTGTACGATCATATCAA
AACGCACCTGTGGATCACATTCATCGTGGTCACCTGCTACCTGGTGCTGT
TGCCCATGTGGGTGATGATCGTGCTGAGGAACGAGTACACGCGGCCGGTG
CTAAAGAGCGGATGGGTTCCCGTCCTCTCGGCCCTCTGCATAAGTGGTCT
GGGTGGCCTTGTGTTGGATGCCGCCGTCGAGGTGTTTAATGGATTCGTAG
TGTTTCAACCGATCATCAACGGAATCGGCGGCAATCTGGTATCGGTGCAG
GCCAGCAAGATATCCACAATGCTGCACCAGAGCTCAATTATCGGGATTAT
ACCACCGCACACGCAGATCTTCGAGTGGCCTTGGCGGGCGCTCTTCAAAG
GAGTTCCCTATGCGAAGACAGCGAGGATACTTATTGCCATGTCCATACCC
GGCAATGTTCTGTTCATCTTTGCTGCTGACTATATAAACTATAGCACCTC
GACGGTCACCTGGGTGTTTGTGCTTTCCTATTTGACCGCCAGTTTGGTTC
AGGTGATGCTGCTGCTGTATATTGCCCACATCATTGTGCACGCGATGTGG
AAGTGGAAGATCGATCCGGATAACTCGGCCATACCCTACCTGACGGCCTT
GGGCGATCTGCTCGGCAGCAGTCTGCTGGCGGTGGCGTGGCTCTTCACCA
TGTCGGTGGGCATGCAGTACGGATCCGGAATGGAGACACTAAACGCACCT
AACGCAAGCTTTCTAGACCAT
BO32960.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:54:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33181-RH | 2091 | CG33181-PH | 52..2088 | 17..2053 | 10185 | 100 | Plus |
| CG33181-RG | 2091 | CG33181-PG | 52..2088 | 17..2053 | 10185 | 100 | Plus |
| CG33181-RF | 2091 | CG33181-PF | 52..2088 | 17..2053 | 10185 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:54:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33181-RH | 4107 | CG33181-RH | 965..3001 | 17..2053 | 10185 | 100 | Plus |
| CG33181-RG | 4232 | CG32714-RG | 1090..3126 | 17..2053 | 10185 | 100 | Plus |
| CG33181-RF | 4113 | CG32714-RF | 971..3007 | 17..2053 | 10185 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:54:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8510242..8510704 | 17..479 | 2315 | 100 | Plus |
| X | 23542271 | X | 8512352..8512750 | 479..877 | 1995 | 100 | Plus |
| X | 23542271 | X | 8513909..8514235 | 876..1202 | 1635 | 100 | Plus |
| X | 23542271 | X | 8515188..8515394 | 1497..1703 | 1035 | 100 | Plus |
| X | 23542271 | X | 8515718..8515923 | 1848..2053 | 1030 | 100 | Plus |
| X | 23542271 | X | 8515462..8515616 | 1702..1856 | 775 | 100 | Plus |
| X | 23542271 | X | 8514306..8514453 | 1202..1349 | 740 | 100 | Plus |
| X | 23542271 | X | 8514524..8514671 | 1350..1497 | 740 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 11:54:42 has no hits.
BO32960.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-30 09:39:52 Download gff for
BO32960.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33181-RF | 970..3006 | 17..2055 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:52 Download gff for
BO32960.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33181-RF | 971..3007 | 17..2055 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:53:24 Download gff for
BO32960.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33181-RF | 971..3007 | 17..2055 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:53:24 Download gff for
BO32960.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8510242..8510704 | 17..479 | 100 | -> | Plus |
| X | 8512353..8512750 | 480..877 | 100 | -> | Plus |
| X | 8513911..8514235 | 878..1202 | 100 | -> | Plus |
| X | 8514307..8514453 | 1203..1349 | 100 | -> | Plus |
| X | 8514524..8514671 | 1350..1497 | 100 | -> | Plus |
| X | 8515189..8515394 | 1498..1703 | 100 | -> | Plus |
| X | 8515464..8515612 | 1704..1852 | 100 | -> | Plus |
| X | 8515723..8515923 | 1853..2055 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:52 Download gff for
BO32960.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8408340..8408486 | 1203..1349 | 100 | -> | Plus |
| arm_X | 8408557..8408704 | 1350..1497 | 100 | -> | Plus |
| arm_X | 8409222..8409427 | 1498..1703 | 100 | -> | Plus |
| arm_X | 8409497..8409645 | 1704..1852 | 100 | -> | Plus |
| arm_X | 8409756..8409956 | 1853..2055 | 99 | | Plus |
| arm_X | 8404275..8404737 | 17..479 | 100 | -> | Plus |
| arm_X | 8406386..8406783 | 480..877 | 100 | -> | Plus |
| arm_X | 8407944..8408268 | 878..1202 | 100 | -> | Plus |
BO32960.pep Sequence
Translation from 16 to 2071
> BO32960.pep
MSLPNEQTNLPHNPSQPASADTQTPATATGTTTPSTPTPSTRTTQPNELK
HRLTPLNVRRLSGYVNPQAISDNAGDDPPPTTINIGLFNNNNNNNTNNNN
NNNNNNNNTASTTPPSAYATPPIYQQQLSTLTATTPLDVAPDDKYRLFTI
FNGNDPDNEKLSGLPHSTTGSLSSIITTSIASSEPDPGAVSGGGGGGGGG
GGGGGIGGAGGGGGGGGGNGGIGSGALVAADASSIAGINGSSEEKLALNR
PGIKQEKWTTILLQVSIPFFLAGIGTIGAGIVLGRVEKWYVFKNVSELFI
LVPALLGLKGNLDMCLASRLSTQVNLGNMTSRQGVIRMIVGNIALVQVQA
TVASFLVAMFAVSVGAAMTGDFYFENMMLLTASAMFTATSSCFVLDFVLV
AVILFSQKYRLNPDNLATPLAASIGDVVSISLLSFIASLLYDHIKTHLWI
TFIVVTCYLVLLPMWVMIVLRNEYTRPVLKSGWVPVLSALCISGLGGLVL
DAAVEVFNGFVVFQPIINGIGGNLVSVQASKISTMLHQSSIIGIIPPHTQ
IFEWPWRALFKGVPYAKTARILIAMSIPGNVLFIFAADYINYSTSTVTWV
FVLSYLTASLVQVMLLLYIAHIIVHAMWKWKIDPDNSAIPYLTALGDLLG
SSLLAVAWLFTMSVGMQYGSGMETLNAPNASFLDH
BO32960.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:17:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33181-PH | 696 | CG33181-PH | 18..696 | 1..679 | 3497 | 100 | Plus |
| CG33181-PG | 696 | CG32714-PG | 18..696 | 1..679 | 3497 | 100 | Plus |
| CG33181-PF | 696 | CG32714-PF | 18..696 | 1..679 | 3497 | 100 | Plus |
| CG33181-PD | 679 | CG33181-PA | 1..679 | 1..679 | 3497 | 100 | Plus |
| CG33181-PC | 696 | CG32714-PC | 18..696 | 1..679 | 3497 | 100 | Plus |
