BO32974.complete Sequence
5200 bp assembled on 2012-07-30
GenBank Submission: KX799400
> BO32974.complete
GAAGTTATCAGTCGACATGGAAGATGTGGAAATCAAGCCTCGCGGCTATC
AACTTCGCCTGGTTGACCACCTAACGAAGAGCAATGGCATTGTCTACCTG
CCCACAGGATCTGGGAAAACGTTCGTGGCCATCCTGGTCCTAAAGCGCTT
CTCGCAGGACTTTGACAAACCCATCGAAAGCGGCGGAAAGCGTGCGTTGT
TCATGTGCAATACTGTGGAATTGGCCCGACAACAGGCGATGGCCGTCAGG
CGGTGCACCAACTTTAAGGTTGGCTTTTATGTGGGTGAACAGGGAGTGGA
TGACTGGACGCGCGGAATGTGGAGTGATGAAATCAAAAAAAACCAAGTTC
TTGTTGGCACAGCCCAGGTCTTTTTGGACATGGTCACCCAGACGTACGTG
GCTTTAAGCTCCCTGAGCGTTGTCATCATAGACGAGTGCCACCACGGCAC
TGGTCACCACCCATTTCGTGAGTTCATGCGATTGTTCACTATCGCTAATC
AAACAAAATTGCCGCGCGTGGTGGGTCTCACCGGGGTGTTAATCAAGGGA
AATGAAATTACGAACGTGGCCACGAAACTTAAAGAGCTAGAGATCACATA
TCGGGGAAACATCATTACCGTGTCCGACACCAAGGAGATGGAAAACGTGA
TGCTGTACGCCACCAAGCCCACAGAGGTCATGGTGTCCTTTCCACATCAA
GAGCAAGTGCTCACGGTTACAAGGTTAATAAGCGCAGAAATTGAAAAGTT
CTATGTATCCTTAGACCTCATGAATATTGGCGTTCAACCGATCCGAAGGT
CAAAGTCATTGCAATGCCTGCGGGATCCGTCGAAGAAGAGCTTTGTAAAG
CAACTGTTCAACGATTTTCTGTACCAGATGAAAGAGTATGGCATCTACGC
AGCTTCCATAGCCATAATCTCGTTAATTGTTGAGTTCGATATAAAGAGGC
GCCAGGCCGAGACGCTAAGCGTGAAATTGATGCATAGGACGGCCTTGACC
TTGTGCGAGAAAATCCGTCACTTGCTGGTGCAAAAACTGCAAGACATGAC
TTATGACGACGACGATGACAACGTAAACACTGAGGAAGTCATTATGAACT
TCTCCACCCCGAAAGTGCAGCGATTCCTGATGAGTCTTAAGGTATCCTTC
GCTGATAAAGATCCCAAAGATATCTGCTGTCTGGTCTTTGTTGAACGCCG
CTACACCTGCAAGTGCATCTATGGCTTGCTGCTCAACTACATCCAGTCTA
CGCCTGAGCTGCGAAACGTGCTCACGCCCCAATTCATGGTGGGCCGCAAC
AATATTTCTCCAGACTTTGAGAGCGTCTTGGAGAGAAAATGGCAAAAATC
TGCCATTCAGCAGTTTCGGGACGGTAATGCCAATCTTATGATATGTTCAA
GCGTCCTAGAAGAAGGCATCGATGTGCAGGCCTGCAATCATGTCTTTATT
CTTGATCCTGTTAAAACCTTTAACATGTACGTGCAGTCAAAGGGTCGGGC
TCGTACCACTGAGGCCAAATTCGTGCTGTTCACAGCTGATAAGGAAAGGG
AAAAGACAATTCAGCAAATTTATCAGTATCGAAAAGCGCATAATGACATT
GCCGAATATTTAAAGGATCGAGTTCTAGAAAAAACTGAGCCAGAATTGTA
CGAAATCAAAGGGCACTTCCAGGACGATATTGACCCTTTTACCAATGAGA
ACGGTGCCGTGTTGCTTCCCAACAATGCCCTGGCCATACTGCATCGCTAT
TGCCAGACAATTCCCACGGATGCTTTTGGCTTTGTGATCCCCTGGTTCCA
TGTATTGCAAGAAGACGAACGTGATAGAATATTTGGTGTTTCTGCCAAGG
GCAAGCACGTAATTTCAATCAACATGCCAGTAAATTGCATGCTAAGAGAC
ACAATTTACAGCGATCCCATGGACAATGTTAAAACAGCCAAAATATCAGC
TGCCTTCAAAGCGTGTAAAGTACTCTACAGTTTGGGAGAGTTAAACGAGA
GATTCGTGCCCAAAACATTAAAGGAGCGCGTAGCCTCTATTGCTGATGTT
CATTTTGAGCACTGGAATAAGTATGGCGATAGTGTGACTGCGACAGTCAA
CAAGGCCGATAAGAGCAAGGACAGAACCTACAAGACCGAATGTCCATTAG
AGTTTTACGACGCACTTCCGCGGGTAGGTGAAATCTGTTATGCCTACGAA
ATATTTTTGGAGCCGCAGTTTGAATCGTGTGAGTACACGGAACACATGTA
TTTAAATCTCCAAACACCAAGAAATTATGCTATATTGCTGCGGAACAAGC
TGCCACGCCTTGCAGAGATGCCCCTGTTTAGCAATCAGGGTAAGCTACAC
GTTCGAGTGGCCAATGCACCACTTGAAGTAATTATCCAGAACTCCGAACA
GCTGGAGCTGCTCCATCAGTTTCACGGAATGGTATTCCGCGATATCTTGA
AGATTTGGCATCCGTTCTTTGTGCTGGATCGTCGCAGCAAGGAGAACTCC
TACCTGGTAGTTCCTCTCATACTGGGTGCGGGTGAACAGAAATGCTTTGA
CTGGGAACTGATGACCAACTTCCGAAGACTACCGCAAAGTCATGGGTCAA
ATGTACAGCAACGCGAGCAACAACCTGCTCCACGTCCTGAAGATTTTGAG
GGCAAAATTGTTACACAATGGTATGCCAACTATGATAAGCCCATGCTGGT
CACAAAGGTGCACCGTGAGCTAACACCGTTAAGTTATATGGAAAAGAACC
AACAGGACAAGACCTACTACGAGTTTACCATGTCAAAGTACGGCAACCGC
ATTGGTGATGTTGTTCACAAGGATAAGTTTATGATCGAGGTCAGAGACCT
TACGGAACAGCTCACTTTCTACGTTCATAATCGTGGAAAATTCAACGCGA
AGAGCAAGGCTAAGATGAAAGTTATTTTGATTCCGGAGCTATGCTTCAAT
TTTAACTTTCCTGGGGATTTATGGCTTAAGTTGATCTTCCTACCCAGCAT
TTTAAACCGCATGTACTTCCTTCTCCACGCAGAGGCCTTACGTAAGCGAT
TTAATACGTATTTAAACCTCCATCTGCTGCCTTTTAATGGAACTGATTAC
ATGCCCAGACCACTAGAAATTGATTATTCGCTAAAGCGGAATGTCGACCC
CTTGGGCAATGTCATACCAACTGAGGATATCGAGGAGCCGAAATCCCTTT
TAGAGCCAATGCCCACAAAGTCCATTGAGGCGTCCGTGGCCAATCTTGAA
ATAACAGAATTCGAAAATCCCTGGCAAAAGTATATGGAGCCGGTTGATCT
GTCGCGAAATCTTTTGAGTACGTATCCCGTAGAGCTGGACTACTACTATC
ATTTTAGCGTTGGTAATGTATGTGAGATGAATGAGATGGATTTTGAAGAT
AAGGAATACTGGGCAAAAAATCAGTTCCATATGCCCACGGGTAATATCTA
TGGCAACAGAACTCCGGCCAAGACTAACGCAAACGTGCCAGCTTTGATGC
CGTCGAAACCGACTGTCCGCGGGAAGGTAAAACCACTGCTCATTTTGCAA
AAAACTGTTTCCAAAGAACATATAACGCCAGCGGAGCAGGGCGAGTTTTT
GGCTGCAATCACTGCCTCGAGCGCAGCGGATGTTTTCGACATGGAACGCC
TTGAGATTCTGGGCGATTCCTTCTTAAAACTTAGTGCCACGCTCTACTTG
GCCAGCAAGTATTCGGATTGGAATGAGGGCACTCTTACAGAGGTCAAATC
CAAGCTTGTGTCTAATCGTAACCTGTTGTTCTGCCTCATCGACGCGGACA
TTCCCAAAACGCTCAACACCATTCAGTTTACGCCTAGATACACATGGCTT
CCACCTGGCATCAGTTTGCCCCACAATGTTCTAGCCTTGTGGCGAGAAAA
TCCGGAATTCGCAAAGATTATTGGCCCACACAATCTCCGTGACTTGGCTC
TCGGCGATGAGGAGTCCCTGGTGAAGGGCAACTGCAGCGATATCAACTAC
AACCGCTTCGTGGAGGGATGTCGAGCAAATGGGCAGTCCTTTTATGCCGG
TGCCGATTTTTCATCCGAGGTGAACTTCTGCGTGGGACTGGTCACGATTC
CCAACAAGGTGATAGCCGATACCCTTGAGGCGCTATTGGGCGTAATCGTT
AAGAACTACGGATTGCAGCATGCCTTCAAGATGCTAGAGTACTTCAAGAT
TTGCCGTGCGGATATTGACAAGCCGCTTACTCAGTTACTGAACCTCGAAC
TGGGCGGCAAGAAAATGCGGGCGAACGTGAATACTACAGAAATTGACGGC
TTTCTCATAAATCACTATTATTTGGAAAAAAATCTTGGCTACACGTTTAA
GGATCGACGATATTTGTTGCAGGCCCTCACCCATCCCTCGTATCCCACTA
ATCGCATCACTGGGTCCTATCAGGAGCTGGAATTTATTGGCGATGCCATA
CTCGACTTTCTAATCTCTGCCTATATTTTCGAGAACAATACGAAAATGAA
TCCGGGCGCCCTCACAGATCTGCGTTCCGCTTTGGTCAACAATACTACGC
TGGCCTGCATTTGCGTGCGGCATCGGTTGCACTTTTTTATCCTAGCGGAG
AACGCAAAGCTCTCCGAGATCATATCCAAATTCGTGAATTTCCAGGAGAG
CCAGGGTCACCGGGTTACCAACTATGTGCGCATTCTGCTCGAGGAAGCTG
ATGTTCAGCCGACTCCGCTGGACTTGGATGACGAATTGGATATGACTGAG
TTACCGCATGCAAATAAATGCATTTCTCAGGAAGCAGAGAAAGGAGTCCC
ACCAAAAGGTGAGTTCAACATGTCCACAAACGTGGATGTGCCAAAGGCGT
TGGGGGATGTTCTGGAGGCCCTTATTGCAGCCGTATACCTGGACTGCCGA
GATCTCCAACGTACTTGGGAGGTAATTTTCAATCTCTTCGAGCCGGAGCT
TCAGGAGTTCACGCGCAAAGTGCCCATCAATCATATACGACAGCTCGTTG
AGCACAAGCATGCGAAGCCCGTGTTTAGCTCGCCCATCGTCGAAGGGGAA
ACTGTAATGGTTAGTTGTCAATTTACCTGCATGGAAAAGACGATCAAGGT
GTACGGATTTGGGAGCAATAAGGACCAGGCCAAGCTATCGGCTGCCAAGC
ACGCCCTTCAGCAGCTAAGCAAATGCGACGCCGCAAGCTTTCTAGACCAT
BO32974.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:55:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dcr-2-RA | 5169 | CG6493-PA | 1..5166 | 17..5182 | 25815 | 100 | Plus |
| Dcr-2-RB | 5166 | CG6493-PB | 1..5163 | 17..5182 | 25735 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:55:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dcr-2-RA | 5684 | CG6493-RA | 100..5265 | 17..5182 | 25815 | 100 | Plus |
| Dcr-2-RB | 5681 | CG6493-RB | 100..5262 | 17..5182 | 25735 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:55:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17575398..17578496 | 5182..2084 | 15480 | 100 | Minus |
| 2R | 25286936 | 2R | 17579415..17580112 | 1352..655 | 3490 | 100 | Minus |
| 2R | 25286936 | 2R | 17578795..17579352 | 1909..1352 | 2790 | 100 | Minus |
| 2R | 25286936 | 2R | 17580166..17580476 | 657..347 | 1555 | 100 | Minus |
| 2R | 25286936 | 2R | 17580914..17581097 | 348..165 | 905 | 99.5 | Minus |
| 2R | 25286936 | 2R | 17578554..17578728 | 2084..1910 | 875 | 100 | Minus |
| 2R | 25286936 | 2R | 17581215..17581347 | 168..36 | 665 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 11:55:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy4 | 6852 | gypsy4 GYPSY4 6852bp | 1527..1595 | 1296..1364 | 120 | 63.8 | Plus |
BO32974.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-30 09:39:55 Download gff for
BO32974.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dcr-2-RA | 81..5246 | 17..5184 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:59 Download gff for
BO32974.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dcr-2-RA | 100..5265 | 17..5184 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:53:32 Download gff for
BO32974.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dcr-2-RA | 100..5265 | 17..5184 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:53:32 Download gff for
BO32974.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17575396..17578495 | 2085..5184 | 99 | <- | Minus |
| 2R | 17578554..17578728 | 1910..2084 | 100 | <- | Minus |
| 2R | 17578795..17579352 | 1352..1909 | 100 | <- | Minus |
| 2R | 17579416..17580112 | 655..1351 | 100 | <- | Minus |
| 2R | 17580169..17580476 | 347..654 | 100 | <- | Minus |
| 2R | 17580916..17581093 | 169..346 | 100 | <- | Minus |
| 2R | 17581215..17581345 | 38..168 | 100 | <- | Minus |
| 2R | 17581406..17581426 | 17..37 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:59 Download gff for
BO32974.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13462901..13466000 | 2085..5184 | 99 | <- | Minus |
| arm_2R | 13466059..13466233 | 1910..2084 | 100 | <- | Minus |
| arm_2R | 13466300..13466857 | 1352..1909 | 100 | <- | Minus |
| arm_2R | 13466921..13467617 | 655..1351 | 100 | <- | Minus |
| arm_2R | 13467674..13467981 | 347..654 | 100 | <- | Minus |
| arm_2R | 13468421..13468598 | 169..346 | 100 | <- | Minus |
| arm_2R | 13468720..13468850 | 38..168 | 100 | <- | Minus |
| arm_2R | 13468911..13468931 | 17..37 | 100 | | Minus |
BO32974.pep Sequence
Translation from 16 to 5200
> BO32974.pep
MEDVEIKPRGYQLRLVDHLTKSNGIVYLPTGSGKTFVAILVLKRFSQDFD
KPIESGGKRALFMCNTVELARQQAMAVRRCTNFKVGFYVGEQGVDDWTRG
MWSDEIKKNQVLVGTAQVFLDMVTQTYVALSSLSVVIIDECHHGTGHHPF
REFMRLFTIANQTKLPRVVGLTGVLIKGNEITNVATKLKELEITYRGNII
TVSDTKEMENVMLYATKPTEVMVSFPHQEQVLTVTRLISAEIEKFYVSLD
LMNIGVQPIRRSKSLQCLRDPSKKSFVKQLFNDFLYQMKEYGIYAASIAI
ISLIVEFDIKRRQAETLSVKLMHRTALTLCEKIRHLLVQKLQDMTYDDDD
DNVNTEEVIMNFSTPKVQRFLMSLKVSFADKDPKDICCLVFVERRYTCKC
IYGLLLNYIQSTPELRNVLTPQFMVGRNNISPDFESVLERKWQKSAIQQF
RDGNANLMICSSVLEEGIDVQACNHVFILDPVKTFNMYVQSKGRARTTEA
KFVLFTADKEREKTIQQIYQYRKAHNDIAEYLKDRVLEKTEPELYEIKGH
FQDDIDPFTNENGAVLLPNNALAILHRYCQTIPTDAFGFVIPWFHVLQED
ERDRIFGVSAKGKHVISINMPVNCMLRDTIYSDPMDNVKTAKISAAFKAC
KVLYSLGELNERFVPKTLKERVASIADVHFEHWNKYGDSVTATVNKADKS
KDRTYKTECPLEFYDALPRVGEICYAYEIFLEPQFESCEYTEHMYLNLQT
PRNYAILLRNKLPRLAEMPLFSNQGKLHVRVANAPLEVIIQNSEQLELLH
QFHGMVFRDILKIWHPFFVLDRRSKENSYLVVPLILGAGEQKCFDWELMT
NFRRLPQSHGSNVQQREQQPAPRPEDFEGKIVTQWYANYDKPMLVTKVHR
ELTPLSYMEKNQQDKTYYEFTMSKYGNRIGDVVHKDKFMIEVRDLTEQLT
FYVHNRGKFNAKSKAKMKVILIPELCFNFNFPGDLWLKLIFLPSILNRMY
FLLHAEALRKRFNTYLNLHLLPFNGTDYMPRPLEIDYSLKRNVDPLGNVI
PTEDIEEPKSLLEPMPTKSIEASVANLEITEFENPWQKYMEPVDLSRNLL
STYPVELDYYYHFSVGNVCEMNEMDFEDKEYWAKNQFHMPTGNIYGNRTP
AKTNANVPALMPSKPTVRGKVKPLLILQKTVSKEHITPAEQGEFLAAITA
SSAADVFDMERLEILGDSFLKLSATLYLASKYSDWNEGTLTEVKSKLVSN
RNLLFCLIDADIPKTLNTIQFTPRYTWLPPGISLPHNVLALWRENPEFAK
IIGPHNLRDLALGDEESLVKGNCSDINYNRFVEGCRANGQSFYAGADFSS
EVNFCVGLVTIPNKVIADTLEALLGVIVKNYGLQHAFKMLEYFKICRADI
DKPLTQLLNLELGGKKMRANVNTTEIDGFLINHYYLEKNLGYTFKDRRYL
LQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFENNTKMNPGALT
DLRSALVNNTTLACICVRHRLHFFILAENAKLSEIISKFVNFQESQGHRV
TNYVRILLEEADVQPTPLDLDDELDMTELPHANKCISQEAEKGVPPKGEF
NMSTNVDVPKALGDVLEALIAAVYLDCRDLQRTWEVIFNLFEPELQEFTR
KVPINHIRQLVEHKHAKPVFSSPIVEGETVMVSCQFTCMEKTIKVYGFGS
NKDQAKLSAAKHALQQLSKCDAASFLDH
BO32974.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:17:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dcr-2-PA | 1722 | CG6493-PA | 1..1722 | 1..1722 | 9016 | 100 | Plus |
| Dcr-2-PB | 1721 | CG6493-PB | 1..1721 | 1..1722 | 8997 | 99.9 | Plus |
| Dcr-1-PA | 2249 | CG4792-PA | 1727..2241 | 1195..1719 | 619 | 33 | Plus |
| Dcr-1-PA | 2249 | CG4792-PA | 817..1305 | 563..1039 | 357 | 25.9 | Plus |
| Dcr-1-PA | 2249 | CG4792-PA | 467..636 | 361..528 | 203 | 30.4 | Plus |
