BO32976.complete Sequence
5431 bp assembled on 2012-07-30
GenBank Submission: KX797965
> BO32976.complete
GAAGTTATCAGTCGACATGGTCGATCCATTAAAAATCTTTTGGGTTTTGA
CAAATAGCACCTATTTGGTTACAAAATTTGTACGCATTGGTATTGCCGAC
AAAAACGATTCACCGCCGTATTTCGATAGATTTCTGTACGAAACTGAAAT
CGATGAAAATGCCGACTTGCAGAGCACTGTCCTCACTGTCAACGCCAAGG
ATCACAATGAGTCGACGAATATTCGATACCAGATCACAGGCGGTAACATA
GGCAATGCATTTGCCGTACAGAACACCACCGGTGTCATTTACGTGGCAAG
TCCACTTGACTACGAAACGAGGCCAAGGTATGAACTGCGCCTGGAGGCAA
CTCGCAATCGCAAAAATAACTACACCACCGTTGTGATCAACGTTCGCGAT
GTCAACGATAATCCACCGGTATTCGATCGTCAAACATATCGTACACAAAT
CACTGAGGAAGACGATCGCAATCTGCCCAAACGCATTCTGCAGGTCACAG
CCACCGATGGCGATGTAGATAGACCAATAAATATTGTATATTTCCTGACT
GGTCAGGGCATCGACCCTGATAATCCAGCGAATAGTAAATTTGATATAAA
TCGCACGACGGGCGATATTTTTGTTCTCAAGCCCCTGGACCGAGATCAGC
CCAATGGGAGGCCACAGTGGCGCTTTACAGTATTTGCCCAGGACGAGGGT
GGCGAGGGGCTGGTAGGCTATGCGGACATCCAGGTGAACCTAAAGGACAT
CAACGACAATGCGCCGCAGTTTCCGCAGGGCATCTACTTTGGTAACGTGA
CCGAGAACGGCACCGCCGGCAGTTCGGTGATGACCATGTCCGCCGTCGAC
TACGACGATCCCAACGAGAGCACCAATGCCAAGCTAATCTACTCGATTGA
GAAGAACGTCATCGAGGAGGAGACGGGGGCGCCCATCTTTGAAATCGAGC
CGGAGACGGGACTCATCAAAACGGCTGTCTGTTGTCTGGACAGGGAGCGA
ACGCCCGACTACTCGATTCAGGTGGTGGCCATGGACGGCGGTGGACTTAA
AGGTACTGGCACCGCCTCCATTCGCGTCAAGGACCTCAACGACATGCCGC
CGCAGTTCACCAAGGACGAGTGGGTTACGGAGGTGGACGAAACGAATGGC
ACTTACATCCCAGAGACGCCCATTCTCACGGTGACGGTTCAGGATGAGGA
CGAAACGAACACGTTCCAATACAAGGTGGTGCCAAACAGTGGTTTCGGGG
CGGATAAATTTGCGATGGTTCGCAATGGCGATGGAACGGGCTCGTTGAAA
ATCATACAACCCCTGGACTACGAGGATCCGCTGCAAAGTAGTGGATTCCG
GTTCCGCATTCAGGTCAACGATAAAGGCGACGATGGACCCGGTGGAAGTG
ACAAGTACCATGTGGCCTATTCGTGGGTGGTGGTGAAGCTGCGAGATATT
AACGACAATGTGCCAAAATTCGATCGGGAGCATATAGAGGTCTCTATCTA
TGAGGATACGAAAGTGGGAACCATTCTCGAGCAATTTAAGGCCACGGATG
CCGACCAGGGCGGTCACTCCAAAGTAGCATACAAAATAGTTCGTTCCACA
AATCGTAAAAGACAATTTGCCATTAGTGATAGAGGAGCAGTGAGCATACA
AAGACCTTTGGATCGGGAAACTCAGGATCGACACCATATTCAGATTTTAG
CCATTGACGATGGCAGTCCTGCTCGAACTGCAACCGCAACTCTAACCGTG
ATAGTCAAGGATGTCAATGATAACGCGCCGACTTTTGCCCAGGACTATAA
GCCCACTTTGCCTGAGAATGTGTCTGGTAAAAAAATTCTTGAGGTGGCAG
CCAAGGATCCCGATGATCGACTAAGGGGCAACGGAGGACCCTTTACCTTT
CGATTGGATCCTTTGGCCAGCGATGAAATAAAAGCGGGCTTTAAAGTGGA
GTATGACCGAAGAGGTGACAATGAAAATGGGGTGGCCATCATTTCATCCC
TCCGTCCCTTTGATCGCGAGGCGCAAAAGAGCTATGCCATTCCCATTGAG
ATCAAGGATAATGGAGCTCCTGCCATGACGGGCACCAGTACTCTAACCGT
TACCATTGGCGATGTAAATGATAATAAAATGCAGCCCGGCAGCAAATCCG
TATTGGTATATAACTACCAAGGACAGTCGCAGGATACGCCGATTGGCAGG
GTCTATGTCAATGATCCCGATGACTGGGATGTGCCGGATAAGAAGTACTA
CTGGGAGGTTCAGGAGCACCAAAGATTTAAACTGGATACGGATACTGGTA
TTTTAACCATGAGAGCGGGAACGAGAAGAGGTCGCTATCAGTTGCGGTTC
AAGGTCTACGATCGTGAGCATGGTCAGGAGGATATTCCTGCCAATCTCAG
CGTTACAGTGCGCGACATAACAGCAGAGGCCGTTCAGCAAGCTGGTTCAA
TGAGGTTGTCTCACATAACCGATGAGGATTTCGTTAGAACTTGGAACCCG
GTTAAGAATCAAGTAGAGCCCTCCAAGCTAGAGAGATTTCGCAACAAGCT
GGCCGAATTATTGTACACCGATAGAGACAATGTCGACGTATTCAGTGTGC
AACTTAAGGAAGGTTCTCCTTATCCCCTAACCGATGTCCACTTTGCAGCT
CGATCTGCTACTCAGCAACCGTATTTCAAAGCAGTCCGCCTAAATGGTGT
GGTCCAAATGCATCGTGAGGAGATTGAAAAAGACGTGGGCCTGAACATCA
CCATGGTCAATATAAATGAGTGCTTGCATGAAGGTAAAGGGAAGTGTGGC
TCCAATTCCTGTACCTCCAAAGTTGAGTTGGGCAAAAAACCCTATACGGT
TAGTGTAAATCGCACTGCTTTGGTGGGCGTTCGTTTGGACATTAGTGCTC
AATGTGTTTGCCGGGCGAGGAACTTCACCCACCAGGATCACAATTGCAGG
ACCCACCTTTGTTATAATGGCGGTCGGTGTGTGGAAACCCGAAATGGTCC
GAAATGCGTGGCCTGTCCGGTGGGGTACAATGGCCCGCGATGTCAGCAAT
CCACGAGAAGTTTTCGCGGCAATGGCTGGGCCTGGTATCCTCCATTACAA
CTCTGCCAGGAATCCCATCTCAGCTTGGAATTCATCACTCGCGTTGCAGA
CGGCTTGATACTCTACAATGGACCCATTGTCCCACCAAAGCCAGAGGAAA
CCGTGATCAGCGACTTTATAGCTCTCGAACTGGAACAGGGCTATCCGCGT
CTACTCATCGATTTCGGCTCGGGAACTTTGGAGTTGAGGGTAAAGACCAA
GAAAACGCTGGATGATGGGGTCTGGCATCGATTGGATATTTTTTGGGATA
CCGAAAATGTCCGGATGGTTGTGGACTTTTGTCGCACTGCCTTGGTCTCC
GAAATGGAGGATGGCACTCCGCCGGAATTCGATGATAACGCCTGTCAGGC
GAGAGGACAAATTCCGCCATTTGCTGAGTCCCTAAATCTAAATCAACCCC
TTCAGTTGGGCGGACTCTATAGACAGCACTTCGATCAAACCCTTTACAAT
TGGCAGTATGCCTTCAGCTCCAAGGGCTTTGATGGTTGTATACGCAACGT
TATCCACAACTCAGAGCACTATGATTTGGCTTTTCCGGCTTTGGCCAGGA
ATAGTTTTCCCGCCTGTCCGCAGACCGACGAAGTTTGCCTGAAAACCGAG
CACACAGCTCGTTGTTGGGAGCATGGAAACTGTGTGGCCAGCTTGGTTCA
GGCCAAGTGCCATTGCCAGCCGGGTTGGATGGGTCCTGGCTGTAATGTAC
CCACCATTCCGACGACTTTCAAGGCCCAGAGCTATGTGAAATTCGCCCTC
AGCTTTGAGCCCGACAGATTTTCCACCCAGTTGCAGCTGAGATTTCGAAC
TCGAGAGCAGGGAGGCGAACTTTTCCGGGTTAGTGATCAACACCACAGGG
AGTACGCCATACTGGAACTTCGAAGAGGCCACCTGCAGTTCCGCTATAAT
CTGAACTCCATGAGAAACGAGGAGCAGCTGCTCACCCTAACCGCAATCGC
AGTGAACGATGGCCAATGGCATGTGATTCGCATTAGTCGATATGGATCGG
CAGCTCTAATGGAACTGGATGGCGGGGAGTCGCGGCGCTACAACGAGTCC
TTTCACTTCACAGGGCATCAGTGGCTGACCATCGACAAGCAGGAGGGTGT
TTATGCGGGCGGCAAGGCCGAGTATACGGGAATCAAGACCTTTGAGGTGC
AGTCCGATTTCCAGAGAAGCTGCTTGGACGACATCAGGCTGGATGGAAAG
CACTTGCCCCTGCCGCCCGCCATGAATGGCACCCAATGGGGCCAGGCGAC
GATGGCCCGCAACCTGGAGCGCAACTGCCCCTCGAACAGGCCGTGCTCGA
ATGTCATCTGTCCCGATCCCTTTGACTGCGTCGACTTGTGGAACGAATAC
GAGTGCACTTGCAGCGAGGGTCGCATCATGTCCTCGGACACCAAGGGATG
TGTGGACCGCAACGAGTGCCTGGACCTGCCATGTCTGAACGGAGCCACCT
GCATCAATCTGGAGCCCCGGCTGCGGTACCGATGCATTTGCCCGGAGGGC
TACTGGGGCGAAAACTGCGAGCTGGTGCAGGAGGGACAGCGCCTGAAGCT
GAGCATGGGCGCCCTGGGGGCCATATTCGTTTGCCTGATTATCATACTGA
TTCTCGCACTGATCTTCGTGCTATATAGTCGCAAACGCAAGACGACCAAG
AAGAAGAAGCGCTCCGGACCCGAGAAGGATGTCCGCGAGACGGTCATCAG
CTACGAGGACGAGGGTGGCGGCGAGGACGACATGACGGCCTTCGACATTA
CGCCACTGCAAATACCAATCAGCGCACAGGGAGGACCGCCGGACATCGCC
GCCTGCAAGATGCCCATAATCTATCCCGTGATGACGCTGCTGCCACCTGG
CCAGGAACTGAACGTGGCCTATCTGATGGAGGAACGGAAGCAGCGCATCG
ACAAGGACAACAACGCACCGCCCTTCGACGACCTGCGGAACTTCACCTTC
GAGGGCAGCGGCAGCATCGCCGAGTCACTGAGTTCGCTAGCCTCCGGCAC
CGATGATGAGAATCAAGACTTTAACTATCTACAGAACTGGGGTCCACGTT
TCAATGCCCTGGCCGCCATGTACGTGCACGATAAGGCGAAAGCCAGCAGC
CAGCTGCCGTCGGATGGCGGAGGAGGATCTGGAGATGGACCTGGACCTGG
AGCCTCATCATCATCGCCGTTGGGAGGCGGTGGCACGGGAGGTGGATCTG
GGATTCCAGGCAATGTCCTTGCCGTCGTCGCAACGGGAAGTGGAGCAGGT
CCTGGAGGCGGCGGTGGTAGCAGTGGGTTGATGCCACTGCCCGAGGTCGA
CAAAGTTGTATTAGCAAGCTTTCTAGACCAT
BO32976.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:55:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CadN2-RD | 5400 | CG42829-PD | 1..5397 | 17..5413 | 26985 | 100 | Plus |
CadN2-RC | 5400 | CG42829-PC | 1..5397 | 17..5413 | 26985 | 100 | Plus |
CadN-RL | 9306 | CG7100-PL | 4204..5684 | 74..1560 | 1610 | 74 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:55:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CadN2-RD | 7914 | CG42829-RD | 1181..6577 | 17..5413 | 26985 | 100 | Plus |
CadN2-RC | 7220 | CG42829-RC | 487..5883 | 17..5413 | 26985 | 100 | Plus |
CadN-RL | 10427 | CG7100-RL | 4807..6287 | 74..1560 | 1610 | 74 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:55:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 17797347..17799673 | 4288..1962 | 11635 | 100 | Minus |
2L | 23513712 | 2L | 17801696..17802607 | 1962..1051 | 4560 | 100 | Minus |
2L | 23513712 | 2L | 17803075..17803499 | 1054..630 | 2125 | 100 | Minus |
2L | 23513712 | 2L | 17788308..17788625 | 5413..5096 | 1590 | 100 | Minus |
2L | 23513712 | 2L | 17661357..17662281 | 1560..630 | 1230 | 75.7 | Minus |
2L | 23513712 | 2L | 17794473..17794714 | 4700..4459 | 1210 | 100 | Minus |
2L | 23513712 | 2L | 17789335..17789556 | 4922..4701 | 1110 | 100 | Minus |
2L | 23513712 | 2L | 17789082..17789256 | 5097..4923 | 875 | 100 | Minus |
2L | 23513712 | 2L | 17796753..17796930 | 4458..4281 | 875 | 99.4 | Minus |
2L | 23513712 | 2L | 17809236..17809403 | 495..328 | 840 | 100 | Minus |
2L | 23513712 | 2L | 17815574..17815718 | 212..68 | 725 | 100 | Minus |
2L | 23513712 | 2L | 17806368..17806508 | 631..491 | 705 | 100 | Minus |
2L | 23513712 | 2L | 17810823..17810938 | 328..213 | 580 | 100 | Minus |
2L | 23513712 | 2L | 17655669..17655910 | 4700..4459 | 430 | 78.5 | Minus |
2L | 23513712 | 2L | 17659214..17659569 | 2362..2007 | 385 | 73.9 | Minus |
2L | 23513712 | 2L | 17827421..17827472 | 68..17 | 260 | 100 | Minus |
2L | 23513712 | 2L | 17651329..17651420 | 4869..4778 | 220 | 82.6 | Minus |
2L | 23513712 | 2L | 17666608..17666737 | 497..368 | 200 | 76.9 | Minus |
2L | 23513712 | 2L | 17657063..17657236 | 4458..4285 | 195 | 74.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 11:55:15 has no hits.
BO32976.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-30 09:39:56 Download gff for
BO32976.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CadN2-RC | 487..5883 | 17..5415 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:01 Download gff for
BO32976.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CadN2-RC | 487..5883 | 17..5415 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:53:33 Download gff for
BO32976.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CadN2-RC | 487..5883 | 17..5415 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:53:33 Download gff for
BO32976.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 17794473..17794714 | 4459..4700 | 100 | <- | Minus |
2L | 17796753..17796923 | 4288..4458 | 100 | <- | Minus |
2L | 17788306..17788624 | 5097..5415 | 99 | <- | Minus |
2L | 17789083..17789256 | 4923..5096 | 100 | <- | Minus |
2L | 17789335..17789556 | 4701..4922 | 100 | <- | Minus |
2L | 17797348..17799673 | 1962..4287 | 100 | <- | Minus |
2L | 17801697..17802605 | 1053..1961 | 100 | <- | Minus |
2L | 17803077..17803497 | 632..1052 | 100 | <- | Minus |
2L | 17806368..17806505 | 494..631 | 100 | <- | Minus |
2L | 17809238..17809402 | 329..493 | 100 | <- | Minus |
2L | 17810823..17810938 | 213..328 | 100 | <- | Minus |
2L | 17815574..17815717 | 69..212 | 100 | <- | Minus |
2L | 17827421..17827472 | 17..68 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:01 Download gff for
BO32976.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 17788306..17788624 | 5097..5415 | 99 | <- | Minus |
arm_2L | 17789083..17789256 | 4923..5096 | 100 | <- | Minus |
arm_2L | 17789335..17789556 | 4701..4922 | 100 | <- | Minus |
arm_2L | 17794473..17794714 | 4459..4700 | 100 | <- | Minus |
arm_2L | 17796753..17796923 | 4288..4458 | 100 | <- | Minus |
arm_2L | 17797348..17799673 | 1962..4287 | 100 | <- | Minus |
arm_2L | 17801697..17802605 | 1053..1961 | 100 | <- | Minus |
arm_2L | 17803077..17803497 | 632..1052 | 100 | <- | Minus |
arm_2L | 17806368..17806505 | 494..631 | 100 | <- | Minus |
arm_2L | 17809238..17809402 | 329..493 | 100 | <- | Minus |
arm_2L | 17810823..17810938 | 213..328 | 100 | <- | Minus |
arm_2L | 17815574..17815717 | 69..212 | 100 | <- | Minus |
arm_2L | 17827421..17827472 | 17..68 | 100 | | Minus |
BO32976.pep Sequence
Translation from 16 to 5431
> BO32976.pep
MVDPLKIFWVLTNSTYLVTKFVRIGIADKNDSPPYFDRFLYETEIDENAD
LQSTVLTVNAKDHNESTNIRYQITGGNIGNAFAVQNTTGVIYVASPLDYE
TRPRYELRLEATRNRKNNYTTVVINVRDVNDNPPVFDRQTYRTQITEEDD
RNLPKRILQVTATDGDVDRPINIVYFLTGQGIDPDNPANSKFDINRTTGD
IFVLKPLDRDQPNGRPQWRFTVFAQDEGGEGLVGYADIQVNLKDINDNAP
QFPQGIYFGNVTENGTAGSSVMTMSAVDYDDPNESTNAKLIYSIEKNVIE
EETGAPIFEIEPETGLIKTAVCCLDRERTPDYSIQVVAMDGGGLKGTGTA
SIRVKDLNDMPPQFTKDEWVTEVDETNGTYIPETPILTVTVQDEDETNTF
QYKVVPNSGFGADKFAMVRNGDGTGSLKIIQPLDYEDPLQSSGFRFRIQV
NDKGDDGPGGSDKYHVAYSWVVVKLRDINDNVPKFDREHIEVSIYEDTKV
GTILEQFKATDADQGGHSKVAYKIVRSTNRKRQFAISDRGAVSIQRPLDR
ETQDRHHIQILAIDDGSPARTATATLTVIVKDVNDNAPTFAQDYKPTLPE
NVSGKKILEVAAKDPDDRLRGNGGPFTFRLDPLASDEIKAGFKVEYDRRG
DNENGVAIISSLRPFDREAQKSYAIPIEIKDNGAPAMTGTSTLTVTIGDV
NDNKMQPGSKSVLVYNYQGQSQDTPIGRVYVNDPDDWDVPDKKYYWEVQE
HQRFKLDTDTGILTMRAGTRRGRYQLRFKVYDREHGQEDIPANLSVTVRD
ITAEAVQQAGSMRLSHITDEDFVRTWNPVKNQVEPSKLERFRNKLAELLY
TDRDNVDVFSVQLKEGSPYPLTDVHFAARSATQQPYFKAVRLNGVVQMHR
EEIEKDVGLNITMVNINECLHEGKGKCGSNSCTSKVELGKKPYTVSVNRT
ALVGVRLDISAQCVCRARNFTHQDHNCRTHLCYNGGRCVETRNGPKCVAC
PVGYNGPRCQQSTRSFRGNGWAWYPPLQLCQESHLSLEFITRVADGLILY
NGPIVPPKPEETVISDFIALELEQGYPRLLIDFGSGTLELRVKTKKTLDD
GVWHRLDIFWDTENVRMVVDFCRTALVSEMEDGTPPEFDDNACQARGQIP
PFAESLNLNQPLQLGGLYRQHFDQTLYNWQYAFSSKGFDGCIRNVIHNSE
HYDLAFPALARNSFPACPQTDEVCLKTEHTARCWEHGNCVASLVQAKCHC
QPGWMGPGCNVPTIPTTFKAQSYVKFALSFEPDRFSTQLQLRFRTREQGG
ELFRVSDQHHREYAILELRRGHLQFRYNLNSMRNEEQLLTLTAIAVNDGQ
WHVIRISRYGSAALMELDGGESRRYNESFHFTGHQWLTIDKQEGVYAGGK
AEYTGIKTFEVQSDFQRSCLDDIRLDGKHLPLPPAMNGTQWGQATMARNL
ERNCPSNRPCSNVICPDPFDCVDLWNEYECTCSEGRIMSSDTKGCVDRNE
CLDLPCLNGATCINLEPRLRYRCICPEGYWGENCELVQEGQRLKLSMGAL
GAIFVCLIIILILALIFVLYSRKRKTTKKKKRSGPEKDVRETVISYEDEG
GGEDDMTAFDITPLQIPISAQGGPPDIAACKMPIIYPVMTLLPPGQELNV
AYLMEERKQRIDKDNNAPPFDDLRNFTFEGSGSIAESLSSLASGTDDENQ
DFNYLQNWGPRFNALAAMYVHDKAKASSQLPSDGGGGSGDGPGPGASSSS
PLGGGGTGGGSGIPGNVLAVVATGSGAGPGGGGGSSGLMPLPEVDKVVLA
SFLDH
BO32976.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:17:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CadN2-PD | 1799 | CG42829-PD | 1..1799 | 1..1799 | 9601 | 100 | Plus |
CadN2-PC | 1799 | CG42829-PC | 1..1799 | 1..1799 | 9601 | 100 | Plus |
CadN-PL | 3101 | CG7100-PL | 1394..3087 | 12..1719 | 6971 | 75 | Plus |
CadN-PD | 3097 | CG7100-PD | 1390..3083 | 12..1719 | 6971 | 75 | Plus |
CadN-PE | 3097 | CG7100-PE | 1390..3083 | 12..1719 | 6971 | 75 | Plus |
CadN-PD | 3097 | CG7100-PD | 1066..1794 | 24..760 | 515 | 27.5 | Plus |
CadN-PL | 3101 | CG7100-PL | 844..1631 | 22..805 | 514 | 26.7 | Plus |
CadN-PL | 3101 | CG7100-PL | 649..1385 | 34..782 | 510 | 26.5 | Plus |
CadN-PD | 3097 | CG7100-PD | 649..1381 | 34..782 | 509 | 26.4 | Plus |
CadN-PL | 3101 | CG7100-PL | 1066..1798 | 24..760 | 507 | 27.2 | Plus |
CadN-PD | 3097 | CG7100-PD | 844..1627 | 22..805 | 501 | 26.5 | Plus |
CadN-PD | 3097 | CG7100-PD | 508..1200 | 8..727 | 446 | 25.9 | Plus |
CadN-PL | 3101 | CG7100-PL | 508..1191 | 8..712 | 433 | 25.8 | Plus |