BO32990.complete Sequence
1915 bp assembled on 2012-07-30
GenBank Submission: KX800054
> BO32990.complete
GAAGTTATCAGTCGACATGAGACGACCCAAGAAGTACGAGTCCGGTGAGG
CTACGCAGTACATTAGTCGCCGGGCTGCGCTCAGGAAACTCCAGCTCTCG
CTGAACGATTTCCGGAGGCTGTGCATCCTGAAGGGCGTCTATCCCCGGGA
ACCGAAACATAGGCGTAGAGCTCAAAAGGGATCTTCGGAGATCAAGGTGC
TTTATCACACCAAGGACATTCGCTTTCTGCTGCATGAGTCGATTGTGTGG
ACGCTGCGTGACTACAAGATCTTTGCCAAGAAGAGCAATCGCGATCGTGC
CATCAAGGATTTCCGCAACCTGAAGCGTCGATTGGCCCTGTTTCCCGAAA
TCAAACTCGATCACATTGTCAAAGAGCGCTATCCTACCTTCATCGATGCC
CTCAAGGATCTGGATGATTGTCTGACGCTGCTCTTTCTGTTCAGCACCTT
TCCCTCGCTGCACTTGATTCCCAGGGAGCAGTCGAATCTGTGCCGCCGTC
TGACTATTGAGTTCCTACACTACGTGATCGCGTCAAAGTCGCTGCGCAAG
GTGTTCATCTCCATCAAAGGCTACTACTTCCAAGCGGAGATCAAGGGCCA
GAAGGTCACTTGGATTGTGCCGCATTACTATCCGTTCAAGCCACAGTCAC
GCCAGGAGGTGGACTTCAAGGTGATGTCCATCTTTGTGGAGTTCTACACC
ATTATGCTGGGCTTCACCAACTTCCGGCTATTCCATGGCCTGAATCTGGC
CTATCCACCACAATTCCCAAGCAGCGTGCTTCAGGACAGCGAAGAGTCCC
TGAAGGATGAGGCCAGCTTCGTATCTGACCGCATTGCAGCCTTGAACTTC
GAGCTACTGCGCACGGACAAGGTGCAGGAGGATGAGGAGGAGCTGGACAT
TGACATGGAACTTTTGGAGCAGGACGGCGACTCGAAGCGCATCATCAAAA
TGAAGCAGGAGGCGCAGGAAGTGAGCCGTCTACGCACCCTATTCAAGGGC
TTGAAGTTCTTTATCAATCGCGAAGTTCCGCGCGAGCCCCTAGTCATCCT
CATCCGTTCCTTTGGCGGCAAGGTGTCCTGGGACTCGTCTATCTTCGCTG
GCTCAACCTATGACGAAGGTGATGAGACCATCACCCACCAGATCGTGGAC
AGGCCCAGCATTACCACGCAATACATCTCGCGCGACTATATCCAGCCACA
GTGGGTCTTCGACTGCGTCAATCAGCGCCAGCTGCTGCCCACTAACAAGT
ACTTCATCGGCGAGACACTGCCACCGCACCTGTCGCCATTCGTGGACTCC
AAGAGGGACTCGTACATACCGCCGGAAGAGAAGGCCCTCCTGGATCCCTC
CCTGATCGAAACACATGCCCAAAGCGATGACGACTCCGAGGACGAAGCTC
AGGAGGAAGAGGAGACTGTGGACCAAGAGCTGCTCGATGCGCAACTGCAG
CTGGCCTATCAACAGGAAACGGCTGAGTACAAGAAGTACGGCGGTCCCGA
TGGCGTCAACGAAGACGAGGAGGATCCGGATGATGAAGATGATAATGAAG
ACGACGATGAAGAGGAGGAAGAGCTCGACGAGAAGACCAAGCGTCTGCAG
GAGGAGAAACAGAAGATGTCCGTGCAGTCGGGCAAGGTGCACAAGGTCAA
CAAGCGGCAGGTGCACAAGGCCGAGGTCGATGAGCACCGCCTGCAAGCGC
GTATGGTGAAGCCCCGTCATCGCAATCTGTTCCGGAAACTCATCCGCGAG
AAGCAGACTAAGGAAAAGGAGGAATGGCTGTTGCGCAAGAAGCGACGAAC
CATCGAGGCCAACGAGAAGGAGGCCCGGAAGACGGCCAAGCGGGAGGCAC
GCAAGGAAGCGGCGGCTGCAGCTGCCAAGGCTTCCAAGCTGGGCAAGGCA
AGCTTTCTAGACCAT
BO32990.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:55:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4364-RA | 1884 | CG4364-PA | 1..1881 | 17..1897 | 9405 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:55:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4364-RA | 2124 | CG4364-RA | 135..2015 | 17..1897 | 9405 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:55:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9709622..9710722 | 1367..267 | 5505 | 100 | Minus |
| 2L | 23513712 | 2L | 9709030..9709560 | 1897..1367 | 2655 | 100 | Minus |
| 2L | 23513712 | 2L | 9710782..9711017 | 268..33 | 1180 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 11:55:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rooA | 7621 | rooA ROOA_LTR 7621bp | 6969..7020 | 1795..1846 | 116 | 69.2 | Plus |
BO32990.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-30 09:39:59 Download gff for
BO32990.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4364-RA | 133..2013 | 17..1899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:10 Download gff for
BO32990.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4364-RA | 135..2015 | 17..1899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:53:43 Download gff for
BO32990.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4364-RA | 135..2015 | 17..1899 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:53:43 Download gff for
BO32990.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9709027..9709559 | 1368..1899 | 99 | <- | Minus |
| 2L | 9709622..9710720 | 269..1367 | 100 | <- | Minus |
| 2L | 9710782..9711015 | 35..268 | 100 | <- | Minus |
| 2L | 9711120..9711137 | 17..34 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:10 Download gff for
BO32990.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9709027..9709559 | 1368..1899 | 99 | <- | Minus |
| arm_2L | 9709622..9710720 | 269..1367 | 100 | <- | Minus |
| arm_2L | 9710782..9711015 | 35..268 | 100 | <- | Minus |
| arm_2L | 9711120..9711137 | 17..34 | 100 | | Minus |
BO32990.pep Sequence
Translation from 16 to 1915
> BO32990.pep
MRRPKKYESGEATQYISRRAALRKLQLSLNDFRRLCILKGVYPREPKHRR
RAQKGSSEIKVLYHTKDIRFLLHESIVWTLRDYKIFAKKSNRDRAIKDFR
NLKRRLALFPEIKLDHIVKERYPTFIDALKDLDDCLTLLFLFSTFPSLHL
IPREQSNLCRRLTIEFLHYVIASKSLRKVFISIKGYYFQAEIKGQKVTWI
VPHYYPFKPQSRQEVDFKVMSIFVEFYTIMLGFTNFRLFHGLNLAYPPQF
PSSVLQDSEESLKDEASFVSDRIAALNFELLRTDKVQEDEEELDIDMELL
EQDGDSKRIIKMKQEAQEVSRLRTLFKGLKFFINREVPREPLVILIRSFG
GKVSWDSSIFAGSTYDEGDETITHQIVDRPSITTQYISRDYIQPQWVFDC
VNQRQLLPTNKYFIGETLPPHLSPFVDSKRDSYIPPEEKALLDPSLIETH
AQSDDDSEDEAQEEEETVDQELLDAQLQLAYQQETAEYKKYGGPDGVNED
EEDPDDEDDNEDDDEEEEELDEKTKRLQEEKQKMSVQSGKVHKVNKRQVH
KAEVDEHRLQARMVKPRHRNLFRKLIREKQTKEKEEWLLRKKRRTIEANE
KEARKTAKREARKEAAAAAAKASKLGKASFLDH
BO32990.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:17:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4364-PA | 627 | CG4364-PA | 1..627 | 1..627 | 3231 | 100 | Plus |
