BO33008.complete Sequence
1222 bp assembled on 2012-07-13
GenBank Submission: KX799829
> BO33008.complete
GAAGTTATCAGTCGACATGGCTGAAGATAGCTTAGCTGATCAGCTGAATG
TCCCAGAATGGTTAAATGAGCAGTTTGTTACAGATGTTCTGAGATCCCAC
GAAAAGGAACCGGATCTCAGGGTAACCAAATTGGACTTTACTCCAGGAAG
TGCCAAAGGAGATAACTATGCCAGTGTTATAATTCGTGCACGGGTGGAAT
ATATAACCCAGAAGGGATTCTTTTCCAAGTCGCTCATTATTAAGACGGTT
TTGGAAATGTTTGCCGGTTCAGCTCTATTTAAAACTGAAATAGGCATGTA
TAGGAAGGTCCTGCCGGAGTTTGCGAGAATATTGCGAGAAAACAATGATA
CTTCCAGGCTTTACGCAGAATGTATATATTATAGCCTGGAACCGAGTCAA
GTTATGATCTTTGAGGATCTTGGCGAGATGGATTATGCTATGGTGCGAGA
TCGTGTGCTCACACATGGAGAGATATGTGGTGCCTATTCTAAATTGGCCA
AATTTCACGCACTTAGCATGAAGATCATTAACGAGCGACCAGAATTCGTT
AAGGAATTCAAAGATGGCATTTGTCTAGTTGATATTCCCTATATGAGCTC
AGGCATGGGCCCGTTTAAGGATTTTTTGGGCCGCATTCCTGAGTTGGACA
GATACAAGACGCACTTTGAGAAGATAGAAGTCCATTTTATAGACCGACTG
CGTGATATTATGAAAGAGTACCAAACCAATCCTCAGCCTGGCTACTACGT
TCTCTGCCATGGTGACTACCACACACGTAACATAATGGTTAAACATAATA
AGGAATCCGGAGGCTTCGAGGATTGCATGCTGCTTGATTACCAAGGATGC
TATGTTGCTCCTCTTGCCTTCGACCTTATGTATTCCATTTATATGCTAAT
GAACCGAGAACAGCGCATTGGGGAACTAGAGACCTTACTGAACTACTACT
TCTCAGTTCTAAGGGAAACACTAAGAAAGATTGGCTACCAGGGCAAACTG
CCCGATCCTCCTGCGTTCTGGAAGGAAATGTATCGCCTTAAAGATTATGA
GTTCCTATTTCTCAGCACCTACTTGCCAATGTCGGTAGGTCTTAGCCTTG
AAACCGCGACTAACGAAGAAACTGATGATAAATTACAGGATTTTATTGAA
GAGTGTAAATCAATACTGGCAAGATTTGAAAGGTCTGGATATTTTGAGAA
CTTAGCAAGCTTTCTAGACCAT
BO33008.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:44:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31370-RB | 1191 | CG31370-PB | 1..1188 | 17..1204 | 5940 | 100 | Plus |
| CG13659-RA | 1254 | CG13659-PA | 621..915 | 601..895 | 395 | 75.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:44:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31370-RB | 1408 | CG31370-RB | 98..1285 | 17..1204 | 5940 | 100 | Plus |
| CG13659-RA | 1301 | CG13659-RA | 641..935 | 601..895 | 395 | 75.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:43:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25302561..25303079 | 17..535 | 2595 | 100 | Plus |
| 3R | 32079331 | 3R | 25303141..25303656 | 534..1049 | 2580 | 100 | Plus |
| 3R | 32079331 | 3R | 25303708..25303863 | 1049..1204 | 780 | 100 | Plus |
| 3R | 32079331 | 3R | 25301597..25301891 | 601..895 | 395 | 75.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 11:43:59 has no hits.
BO33008.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-13 13:50:21 Download gff for
BO33008.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31370-RB | 98..1285 | 17..1206 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:31:02 Download gff for
BO33008.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31370-RB | 98..1285 | 17..1206 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:50:13 Download gff for
BO33008.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31370-RB | 98..1285 | 17..1206 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:50:13 Download gff for
BO33008.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25302561..25303079 | 17..535 | 100 | -> | Plus |
| 3R | 25303143..25303656 | 536..1049 | 100 | -> | Plus |
| 3R | 25303709..25303863 | 1050..1206 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:31:02 Download gff for
BO33008.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21128283..21128801 | 17..535 | 100 | -> | Plus |
| arm_3R | 21128865..21129378 | 536..1049 | 100 | -> | Plus |
| arm_3R | 21129431..21129585 | 1050..1206 | 98 | | Plus |
BO33008.pep Sequence
Translation from 16 to 1222
> BO33008.pep
MAEDSLADQLNVPEWLNEQFVTDVLRSHEKEPDLRVTKLDFTPGSAKGDN
YASVIIRARVEYITQKGFFSKSLIIKTVLEMFAGSALFKTEIGMYRKVLP
EFARILRENNDTSRLYAECIYYSLEPSQVMIFEDLGEMDYAMVRDRVLTH
GEICGAYSKLAKFHALSMKIINERPEFVKEFKDGICLVDIPYMSSGMGPF
KDFLGRIPELDRYKTHFEKIEVHFIDRLRDIMKEYQTNPQPGYYVLCHGD
YHTRNIMVKHNKESGGFEDCMLLDYQGCYVAPLAFDLMYSIYMLMNREQR
IGELETLLNYYFSVLRETLRKIGYQGKLPDPPAFWKEMYRLKDYEFLFLS
TYLPMSVGLSLETATNEETDDKLQDFIEECKSILARFERSGYFENLASFL
DH
BO33008.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:09:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31370-PB | 396 | CG31370-PB | 1..396 | 1..396 | 2085 | 100 | Plus |
| CG13659-PA | 417 | CG13659-PA | 1..416 | 1..395 | 1280 | 60.6 | Plus |
| CG13658-PB | 422 | CG13658-PB | 12..422 | 7..396 | 963 | 46 | Plus |
| CG11893-PA | 416 | CG11893-PA | 12..416 | 7..396 | 951 | 46.2 | Plus |
| CG31104-PA | 420 | CG31104-PA | 10..420 | 7..396 | 938 | 46.7 | Plus |
