BO33021.complete Sequence
5683 bp assembled on 2012-09-07
GenBank Submission: KX795735
> BO33021.complete
GAAGTTATCAGTCGACATGGAGGATGCACAGGAGCAAAGGGAATCCTCGC
AAGCCGAATTGGCCAAAAAGCATCCGCTGACGCCGCTCAAGGAGCTGCCT
GAAGAAAGCGAGGAGGAGGAGGAGGAAGAGGATGAATCCTCGGCGGGAGC
CCTACGGGAGTCTGACAGCAACAACTCCATCATGGGGAAGATGAAGATGC
GCGTGTCCAGCATTCTGCCCGCCTCCTTGAGCGGTTGGTTTTCGCCGTCG
TCCAAAGATGGGAACGATGCCTTATCCTCCCCAGCTAATCTCCGCCAGTC
ACAGCCACGCCAGTCCAATGGACGCCTCACTACCAAGCGGAAACGAGGAC
GCCGTCGGATAATGCTAGCCGAAGTGGATGCCGATGCAGCCGATGATCTT
GATGACGGCTCCGATGCCAAAGGCCTCAACTATGAGGAGGTGGCCCTGGC
CGACAACATAGCCGAACACGACCTGGCCGCCGAGGATGAACAGACGCGGC
GGAGCGAGTACAATGTGTTCCTGCTGCGCAAGCGAGCCGGGGCTGTTGCA
GCTGCCGGCGGTGACGAGGATGAGGCCGAGGAGGATGAACTGGAAGAGGA
CGACGAGGATGGCGATGAGGAGGATGACGATGAAGAGCAGGAGAATCTCC
AACAGTCCGCCGCCGTGCAGACCAAGCGTCGACGCCTGGAGCTGGAGACC
CCCGTCAATTTGCCGAACATGCGTCGTCTGCCCCTTTTGTCATCCACGCC
TGCTGCTCCGCTCGCGGCTGCCACCAGCTCCTCCAGCTCCCAGATGTACA
AGGGCGTCAGCCACATTGCGCCACATCGGCGCAATCACCTCAATTTGTAT
GGTAGTCAACGGCAGCGCGAACCCGCGTACAACTTTTTCACGGGCAACGA
AGCTGCCGAGGGAAGCACCGGGGATCTGCCACACAGCATCCGCCGTTCAC
TGAACATACCTTTCGGAGGCAGCAGCACCGCTACCAGCTACAACAACAGC
CTATCCAGCCTTCCTAACCACAAGCGACCATCGCTCATAGGCAAGCAAAC
CCATCGACGCGATCTTACCATGGATGAGACGGGGACTGGCCCGGCCATGA
GTTCGGAAGAACATCTCAATCATTTGCTGAGAATAAGCAGGACCAACAAC
AATACTAGCAACAATAATAATAATAATAATAACAACAACAATGTCATTGA
GACAAAAACAAGACGAAGTGAACTGTCTGCGGCCGCAGGAGGTTGCGGTG
ATTCGCAGTCCGAGAGCGATATGAACGAATACCACGACAATGGTGAAGGG
CACGACGGACTTCGTCCGTCGCATTACAACAGCAACAGCAATTTAGAATT
TTACGGAAATCTGCAGAGCTCCAAGTCAATATTTAACAGAAGCAACACCG
CCGCACAGCAATCGCATCGGAATTCTACGTGGTCGCTGAATTCCCTTACC
CAACGACGTCGCTTCAATGCGTCCATATACGGCAGTACGTCGGCACTGAG
CGACAGTCGTCTGCTTAGTGGCAGTGCCTCTAACTCAGGCTCTGCATCTG
CCTCTAGCTCGCCCTTTTACCAGGGACGCACCACCTTCGGGGGCAATTCC
GGCAACAATCGCCTCTTCAGTCGCAGCAATCTTAGCTCATCCGCCGCATC
CTCAATGTTGGGACTCAATTCTGCCGGCAGCTCACCGGCGCATCAGCTGC
ATGCTTCCATGACTGGTGGTATTGGATACGGTATGAAAGCGGTAGATATG
CGACCTTCAGACTCCGGCAGTCTTGCGGAGACATCTGTGGGCCAAGGTGG
CAGTAAGAAACCCGGTACCGGGCTGTCGAACACCACGATGCGCATTCTCA
ACCTACTTGAAAGCTACTCCACGCCATTGATCGATGCCAAGCGAATGGGG
AGCAGCATCAAGGAGCATCAAAGCAGTCGCCAACAGCGCCAGGGTACGCC
AGCCACCCCGTATCTACGTTCCACGAGTGCCAGCCGCAATGTTTCGGTGC
CCAATCACATCAACGAGTTGGCGGAACTGCGCTCTAACAAACTGCTGGTG
CCGACGATGCAGCAGCTTCTGGAACGTCGTCGTCTACACCGCGTTACACA
GAACTCTCGAGATGTGGTTCACAGCCAGAACGTTCGTGCTGGTGGGGAAA
ACAACCAGGAGAAGCCCAAGCCAACTGCACCATATGTTGCTCCGATAGAC
CAGTCGGCTAACCATACTCAGCACACAAACAAGATGCGTTCGCGTCTTTC
GCACCAGACGCGCAACAAGGAGACACGCACGGCGGAAGAGGAAGCACCCC
CGCCGCTGGATTTGCCACAGATCAGCTTTCCGGACATGGCAAGCGCCCCA
AAGTTTGATTTGATAATCAAACCCACGGTGCCAGTGGTATCAAAACCATC
TACCACCGACCCAATCCAAAGTAGCAAAAGTAGCAACACCAACCTCTCTA
CTACAAACTCCAAGCAGATGCCAAACTTCCTGGCTAATCCCCAGCCTGCG
GCACCAATTGTTAACTTCGCTGCCAATGGAAACGTTTCTGCAATCAGTAA
ACCAAGTAAACGCACATTCACCTTCTCAGAACCCACACCTTTGTCGAACT
TTCAGGAGAACTGCATCCCCAAGCCGAAGATCAATCGCAAATACACCTTC
TCGGCACCGGCACCACTGGATGATTTGCGTATAACGAACAAACAGTCGCA
GCCAACCATAAACGGAACGCCGTCATCCAAGGAGTGGGAGTGTGATACGT
GTATGGTGCGAAACAAGCCCGAGATCAACAAGTGTGTGGCCTGTGAGACG
GCCAAGCCGGTAGCATCTGCGGCTCCTGTCCAAGCACCATTACCACCATC
TACAGCAGCTATTGACACACAAAGTTTCGTTGGTTTTGGGGATCGATTCA
AGAAATCGACGACTGCCTGGGAGTGCGATGCCTGCATGCTGTCCAATAAG
GCTGAAGCCAGCAAATGCATTGCCTGCGAGACTCCAAGGAAAACTGTTGC
ACCAAAGGTCAACAACTTCTCACCGTTGATTACAAATGCGAAAAGCAACG
AGTGGGAGTGCTCTGTGTGTCTGGTGCGCAACAAAGTCGAGGTCAGCAAG
TGTGTGGCCTGTGAGTCGGCCAAACCAGGCGCAACTATGGCTCTCCCTGC
AACATCTAATATAGCTGTTGCGACTCCCTCTATAATTACGGATGGCTTTG
GGGATCGATTCAAGAAATCAGCGACTGCCTGGGAGTGCGATGCCTGCATG
CTGTCCAATAAGGCTGAAGCCAGCAAATGCATTGCCTGCGAAACTCCGCG
AAAATCTTCGACTCCAATAGCGAACAGTAGTTACCCGTCGATCAACAATA
ATTTGCCAGCCGGATCCGGTTTTGATATTTCCTTCACGCGAAAGGCAAAC
ATGTGGGAGTGCCAAACATGCCTGGTGATGAACAAGTCGAGTGATGAGGA
ATGCATTGCCTGTCAAACGCCAAACTCACAGGCGAGAAACAGCAACAGCG
AGTCCGCACTGATTTCATCCATAAGCTCTTCCTCGGCATCGTTCTCCGGA
TCTTTATCCAGACCCTCATCTAGATCATCCTCTGGGTCAACCTCAACCTG
TGGGTCAGTTTGTTCGGGATCTATCGTCAGCATTAGCTCCACCACCGAAA
GCGCCAAAGCATTATCAGCAAAAAAGGTGCCCCCCAAGCCGGATGCCGGA
TTTCAGCAGCTAGTGGCAGCCCAAAAAACATCAACTTGGGAATGCGAAGC
ATGCCTGGCAAAGAATGATATGTCGCGGAAGACGTGTATCTGCTGTGAAC
AGATGATGCCGGAAGCATTTAACCCTGCCGCAACAACGGCCAACTCCGCA
GCCAGTTCGGTGCCCAAATTCCGTTTTGGATTTTCTCATGTAAAGGAGGT
TGTCAAGCCATCTGTGGAAACGACGACCACACCAGCACCAACTTCCGCTC
AATTTAGCTTCGGTTTCGGCCAAAGCAATCAGGGTAAGGATGTGGCGGAC
AGCAAGAAGACGGAGGCCCCGAAGACCTTTATGTTTGGCGTGAGCAAAGT
GGAAGAGCCCAAGACGGTGAGTTTTGGGACAGGCATCAAGGAAACAACGG
CCACATCGAGCACAGAAGCTACAGCTCCAACTCCAGCTGCAGCAGCACCA
GCACCAGTCCAGTTTGTGTTCAAGGCACCGACTACCGCAACCACGGCCAG
TTCACTCACCACCACAATCAGCACCACCAGCAACGCTCCTGCTTTGGGTG
GCTTCAGCTTTGGCGCTCCATCATCGTCCTCTACAGTTTCCAGTTCGACG
ACTAGTACCAGTGCGAATCCCGCGGCTGTCAAACCGATGTTCAGCTGGTC
CGGAGCTGGCAGTGCCGTGAGCAGCACCAGTAGCAGCCAGCAGCCAGTGG
CCAAGGCGCCAACCCTAGGTTTTGGTGTTTCCTCCAGCACCGTAACAACG
ACAACAACCTCTACGAAAGTTTTTGCTTTCACACCGGCATCTGGTCTAGA
TCCGGCAGCAGCCACCTCGGCACCAGCTGCAGGTGCCGGCTTCAGTTTTG
GAAGTCAGTCAAAGCCAGCAACCACACAGAACACTGGAACCTTCTTCTTT
GGCCAGCCAACAGCGGTTGCGCCAGCAACGCCAACCAACCCTAGCGTGAG
CTCCATCTTCGGAGCACCGGCAACAAGTACCACTGCAAGCACCAGCGTGA
GTGCCACCACCAGCACCAGCACCGCCAACGCCATTGCTTCCAGCTTTGCG
CCCACCTCGACCCCTCAGCTCTTTGGCAATTGGGGTGAAAAGAAAACGGA
CTTGACCACCTTTGGTGCTTCTTCCGGTTCGGGAACGACTACAACGCCTA
GCTTCGGCTGGTCGAGCAATGGAGATGCGGCAAAGAGCAACAGCGCTGCG
GTCGGCAGTGCGGCGGTGCCTTCGTCTTCGGCCTCCACGATGGCGACTCC
GATATTCGGCAGCAGTTCCATGTTTGGACCATCCAGTAGCAGTAACAACA
CCACCAGCACCAGCACCACTAGTCTACCATTCGGATCAGCGGCGACCACT
GCCGCAACTACGCCGGCGGGCGGCAATGCAGCCCTTACTGGGTTATTCGG
CAATGTGGGCAACTCTCTAGCGGGAGTAGGAGCTCCTGTAGCCACAACAC
CAGCGGCAACAGCTGCTGCTCCATTGACCAACATCTTTGGCAATCCCACG
CCAGTTGCTGCTGCCGCGCCTGTCTTCGGCAGCGGAAGCACCATCCCAAG
CGCAGGATTTGGAGCGCCTGCTGCAGCTGCTCCGTTGGCGGCCCCAGCGT
TACCAGGAGCATTTAACTTTGGCGGAGCAACTGCAGCCACGCCAGCTGCC
TCAAGTGCTCCATTTGTATTCGGAAGCAGCACCAATGAGCCGCTGGCCAA
ACCGTCGTTCAACTTCACCGGCTCGGCGGCCAGCTCGACTGCTCCTGCGC
CAGCCTTCAATTTCACGGCCAATACGGCGGCCACTAATAATCCCTCCGGT
GGCGATTCCACACCGAATGCCAATGCACTGTTCCAATTTAGCGCGACCTC
CACAGCGCCAGCCAATATATTTGCCTTCAATCCGCCAGCTGCGGGCAACT
CGGCGCAGAGTTCCCAGACGGCTCGCCGCAAAATCCGCGCCCCCGTACGC
CGTTTGCCGCCCCGGGCAAGCTTTCTAGACCAT
BO33021.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:58:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nup153-RC | 5652 | CG4453-PC | 1..5649 | 17..5665 | 28245 | 100 | Plus |
| Nup153-RA | 5652 | CG4453-PA | 1..5649 | 17..5665 | 28245 | 100 | Plus |
| Nup153-RD | 5790 | CG4453-PD | 1..5492 | 17..5508 | 27460 | 100 | Plus |
| Nup153-RC | 5652 | CG4453-PC | 2865..2969 | 3193..3297 | 465 | 96.2 | Plus |
| Nup153-RC | 5652 | CG4453-PC | 3177..3281 | 2881..2985 | 465 | 96.2 | Plus |
| Nup153-RA | 5652 | CG4453-PA | 2865..2969 | 3193..3297 | 465 | 96.2 | Plus |
| Nup153-RA | 5652 | CG4453-PA | 3177..3281 | 2881..2985 | 465 | 96.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:59:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nup153-RC | 7927 | CG4453-RC | 915..6563 | 17..5665 | 28245 | 100 | Plus |
| Nup153-RA | 7843 | CG4453-RA | 831..6479 | 17..5665 | 28245 | 100 | Plus |
| Nup153-RD | 7981 | CG4453-RD | 831..6322 | 17..5508 | 27460 | 100 | Plus |
| Nup153-RC | 7927 | CG4453-RC | 3779..3883 | 3193..3297 | 465 | 96.2 | Plus |
| Nup153-RC | 7927 | CG4453-RC | 4091..4195 | 2881..2985 | 465 | 96.2 | Plus |
| Nup153-RA | 7843 | CG4453-RA | 3695..3799 | 3193..3297 | 465 | 96.2 | Plus |
| Nup153-RA | 7843 | CG4453-RA | 4007..4111 | 2881..2985 | 465 | 96.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:58:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16601374..16605787 | 935..5348 | 22070 | 100 | Plus |
| X | 23542271 | X | 16600380..16600895 | 176..691 | 2580 | 100 | Plus |
| X | 23542271 | X | 16600952..16601198 | 690..936 | 1235 | 100 | Plus |
| X | 23542271 | X | 16600155..16600313 | 17..175 | 795 | 100 | Plus |
| X | 23542271 | X | 16605850..16606008 | 5348..5506 | 795 | 100 | Plus |
| X | 23542271 | X | 16603320..16603424 | 3193..3297 | 465 | 96.2 | Plus |
| X | 23542271 | X | 16603632..16603736 | 2881..2985 | 465 | 96.2 | Plus |
| X | 23542271 | X | 16609005..16609095 | 5575..5665 | 455 | 100 | Plus |
| X | 23542271 | X | 16607933..16608000 | 5507..5574 | 340 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:58:58 has no hits.
BO33021.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-07 11:02:28 Download gff for
BO33021.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup153-RC | 833..6481 | 17..5667 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:49:38 Download gff for
BO33021.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup153-RA | 831..6479 | 17..5667 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:18:36 Download gff for
BO33021.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup153-RA | 831..6479 | 17..5667 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:18:36 Download gff for
BO33021.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16600155..16600313 | 17..175 | 100 | -> | Plus |
| X | 16600380..16600895 | 176..691 | 100 | -> | Plus |
| X | 16600954..16601198 | 692..936 | 100 | -> | Plus |
| X | 16601376..16605786 | 937..5347 | 100 | -> | Plus |
| X | 16605850..16606008 | 5348..5506 | 100 | -> | Plus |
| X | 16607933..16608000 | 5507..5574 | 100 | -> | Plus |
| X | 16609005..16609095 | 5575..5667 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:49:38 Download gff for
BO33021.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16494188..16494346 | 17..175 | 100 | -> | Plus |
| arm_X | 16494413..16494928 | 176..691 | 100 | -> | Plus |
| arm_X | 16494987..16495231 | 692..936 | 100 | -> | Plus |
| arm_X | 16495409..16499819 | 937..5347 | 100 | -> | Plus |
| arm_X | 16499883..16500041 | 5348..5506 | 100 | -> | Plus |
| arm_X | 16501966..16502033 | 5507..5574 | 100 | -> | Plus |
| arm_X | 16503038..16503128 | 5575..5667 | 97 | | Plus |
BO33021.pep Sequence
Translation from 16 to 5683
> BO33021.pep
MEDAQEQRESSQAELAKKHPLTPLKELPEESEEEEEEEDESSAGALRESD
SNNSIMGKMKMRVSSILPASLSGWFSPSSKDGNDALSSPANLRQSQPRQS
NGRLTTKRKRGRRRIMLAEVDADAADDLDDGSDAKGLNYEEVALADNIAE
HDLAAEDEQTRRSEYNVFLLRKRAGAVAAAGGDEDEAEEDELEEDDEDGD
EEDDDEEQENLQQSAAVQTKRRRLELETPVNLPNMRRLPLLSSTPAAPLA
AATSSSSSQMYKGVSHIAPHRRNHLNLYGSQRQREPAYNFFTGNEAAEGS
TGDLPHSIRRSLNIPFGGSSTATSYNNSLSSLPNHKRPSLIGKQTHRRDL
TMDETGTGPAMSSEEHLNHLLRISRTNNNTSNNNNNNNNNNNVIETKTRR
SELSAAAGGCGDSQSESDMNEYHDNGEGHDGLRPSHYNSNSNLEFYGNLQ
SSKSIFNRSNTAAQQSHRNSTWSLNSLTQRRRFNASIYGSTSALSDSRLL
SGSASNSGSASASSSPFYQGRTTFGGNSGNNRLFSRSNLSSSAASSMLGL
NSAGSSPAHQLHASMTGGIGYGMKAVDMRPSDSGSLAETSVGQGGSKKPG
TGLSNTTMRILNLLESYSTPLIDAKRMGSSIKEHQSSRQQRQGTPATPYL
RSTSASRNVSVPNHINELAELRSNKLLVPTMQQLLERRRLHRVTQNSRDV
VHSQNVRAGGENNQEKPKPTAPYVAPIDQSANHTQHTNKMRSRLSHQTRN
KETRTAEEEAPPPLDLPQISFPDMASAPKFDLIIKPTVPVVSKPSTTDPI
QSSKSSNTNLSTTNSKQMPNFLANPQPAAPIVNFAANGNVSAISKPSKRT
FTFSEPTPLSNFQENCIPKPKINRKYTFSAPAPLDDLRITNKQSQPTING
TPSSKEWECDTCMVRNKPEINKCVACETAKPVASAAPVQAPLPPSTAAID
TQSFVGFGDRFKKSTTAWECDACMLSNKAEASKCIACETPRKTVAPKVNN
FSPLITNAKSNEWECSVCLVRNKVEVSKCVACESAKPGATMALPATSNIA
VATPSIITDGFGDRFKKSATAWECDACMLSNKAEASKCIACETPRKSSTP
IANSSYPSINNNLPAGSGFDISFTRKANMWECQTCLVMNKSSDEECIACQ
TPNSQARNSNSESALISSISSSSASFSGSLSRPSSRSSSGSTSTCGSVCS
GSIVSISSTTESAKALSAKKVPPKPDAGFQQLVAAQKTSTWECEACLAKN
DMSRKTCICCEQMMPEAFNPAATTANSAASSVPKFRFGFSHVKEVVKPSV
ETTTTPAPTSAQFSFGFGQSNQGKDVADSKKTEAPKTFMFGVSKVEEPKT
VSFGTGIKETTATSSTEATAPTPAAAAPAPVQFVFKAPTTATTASSLTTT
ISTTSNAPALGGFSFGAPSSSSTVSSSTTSTSANPAAVKPMFSWSGAGSA
VSSTSSSQQPVAKAPTLGFGVSSSTVTTTTTSTKVFAFTPASGLDPAAAT
SAPAAGAGFSFGSQSKPATTQNTGTFFFGQPTAVAPATPTNPSVSSIFGA
PATSTTASTSVSATTSTSTANAIASSFAPTSTPQLFGNWGEKKTDLTTFG
ASSGSGTTTTPSFGWSSNGDAAKSNSAAVGSAAVPSSSASTMATPIFGSS
SMFGPSSSSNNTTSTSTTSLPFGSAATTAATTPAGGNAALTGLFGNVGNS
LAGVGAPVATTPAATAAAPLTNIFGNPTPVAAAAPVFGSGSTIPSAGFGA
PAAAAPLAAPALPGAFNFGGATAATPAASSAPFVFGSSTNEPLAKPSFNF
TGSAASSTAPAPAFNFTANTAATNNPSGGDSTPNANALFQFSATSTAPAN
IFAFNPPAAGNSAQSSQTARRKIRAPVRRLPPRASFLDH
BO33021.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:28:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nup153-PC | 1883 | CG4453-PC | 1..1883 | 1..1883 | 9616 | 100 | Plus |
| Nup153-PA | 1883 | CG4453-PA | 1..1883 | 1..1883 | 9616 | 100 | Plus |
| Nup153-PD | 1929 | CG4453-PD | 1..1929 | 1..1883 | 9559 | 97.6 | Plus |
| CG14712-PA | 1266 | CG14712-PA | 505..1114 | 1292..1866 | 365 | 27.5 | Plus |
| CG14712-PA | 1266 | CG14712-PA | 513..1221 | 1204..1858 | 349 | 25.6 | Plus |
| Muc91C-PB | 949 | CG7709-PB | 305..908 | 1270..1863 | 327 | 25.2 | Plus |
| CG14712-PA | 1266 | CG14712-PA | 592..1248 | 1130..1783 | 290 | 25.6 | Plus |
| CG14712-PA | 1266 | CG14712-PA | 253..1217 | 632..1588 | 242 | 22 | Plus |
| CG14712-PA | 1266 | CG14712-PA | 477..872 | 1524..1873 | 180 | 24.8 | Plus |
