BO33026.complete Sequence
4324 bp assembled on 2012-07-30
GenBank Submission: KX793949
> BO33026.complete
GAAGTTATCAGTCGACATGGATGATAATACGGAGAACACAGATGGAAAGC
GCGTGACGCGGGCTAGAACTCGTCGCTTGTCCCTTCTGGAAACGGACAGT
CGTCCGAGCACTCCGCAGTTGGATACGGTTGCGGAACTCGGTACCGCTTC
GCCACGTGCCACACGTCGCACACGTCTGAACTCGTCCACTTTAGATGTGA
GGACTCCAACACGAACCAGGCGCGCATCCTTGGCACGCGGTGAAACTCCC
GAGCCGACGACGCCCTCTTCCGTGAAAAGGACAGCTCGCACGCCAGCTAA
AAACACCAGATCTGTGCGCCAACAGCTTACACTAACAGAGGAACCTGAGG
AAAATGAGGTCAAGCAGGAAAAGCCCAGCCCCAGTCCAAGCCCTGTGCCC
AAAGAGGGCAAGGGAAAGGCACAGCGGAAGCCCAGTGTCAGTCCGAGTCC
AGGGCGAACACTCACACCCAATCAGCAGAGTGATGAGAAACGAGTGACGC
GTTCAATGTCTCAGACTCCACCAATGCCCACTCGTTCGTCCAGTAATACG
CCTCGTGATCTTAACGATTCACCCAAAGTTGAGCAAAAAGCTAAACCCAA
TATTAAAACCACTCCCAAAGTGGCAGTCAGGCTCGAGAAACTTTCAATGG
ACAAATTCTCTGGCAAGAAGATGGAAAAGGCGAAGCCATTGATTGTACCG
GATGAACTCAAGGATAATGGAGTTGTTGAGGAGCAAAATAAATCTATCAC
TGAAGCCCATTCACAGGCACCAGAAACACACGAATCAGCCCAACCTGACA
AGGATGCTGGCAAACAATCATTCCTGAAGTCATTTACTACACTTTCGAAA
ATTCAAGGTTCAAGTAAAGCTCTTCACCCTGATGAGAGCGCAGATACAAT
TACAAAAATAACTCCAACCTCGACATCCAAGAAAATTGAAGAAAACATGG
ATGATGTGTTTGAAACACTACGCGTCGAGTCCCCCAAAGTTGAAAGAAAA
ATCGAGACTCTGCAGAAAGTCCATACTGTTGGCACTCCTGAAATTAAAGA
AAAAGACGAGCCCGTTGGGGTAGACAATGAAATTAAAACGAAAACCGAAA
CTCCCCAGAAGATTGAACCCCCTATAATTGAAAGCAAAGTAGAAACTCAG
CAACTGATTGATCATCCTCAAATAGAAAAGAAAAGAGATACTCCACAAAA
CGTTTCTACTGTTGACTTAATGGACACAAGCCCAGAAAAAGATGAGTCCA
TGGAGGACCAAGAGTTTTTGGATGCAGAAGATTCGATTGTTCAGTTAGAG
CCACAAACCGATGAGCCAGTAGAGAAACCAAAAGAACTGGAGTTTGTAGA
CCTCGACGACGATGAGCCGGTATTTCCGTCGGAAGCTCCAAAATATGTCG
AAGACAGTAAGGAAGTACACCCAGATGATTCAATGGATGATGACAAGCAA
AACAAAATCGATGTTACCGAGGTTATACATCTGCCCAGCATAAGAGCTCG
TGCTGTGCGTTCTCCTGCTGTGGAGCAAAAAAAATCGGTGGACTTCAACA
ACGACACTGATGACTTAGAGGTAGAAAAGAAACGGTTTCCCAAGACTCCA
GGACGTGAGAAGGTGCCAGTTTGTCGCATTCTAACCCCCAAGCCGGAGAC
GCCCTTAAAACTGGCTCTGCAAAAGGGTCGTAATAGTTCCACACCAATAT
TAAAAGATCAGGAACGTGGCCTGTCCAACAGCACGGAGGAATTGCATCCA
GCACCTCCTCAAATTGATGCTATCAAGCCATTCGATGAGCTGGAATCAAA
GAATGCTAAGGATGAGATGGTGGAACAATCACCCATGTCAAAGCAAAAGG
CTGAGAATAAAATCCTGGCTCGTCTAGAAAGCTTTGAGGAAGATGTTGAA
GACCACGGGAATGAAGAAGAAAACGAGGAGGAGCACGAAGAAGACAAATC
CATTTCCGAATTTGTGGACCTAGAAGCTGAAGATGCTGGGAAAGATTACA
TGTCTGGAGATTCGATGGACAGTTCGCTTCGCCGGGAAATGGAGGAGAAT
GAAATTCCAATCGATGGGGAGTCCGTTGGCAGTAAAGATACTGAGGAGTC
TACCCCAGAAGAATCTGATGGCGACGATTCGTTTATTGTATCGGACAACG
AAGACGAGGAAGATTTAGGACAGCTTTGCTACTCCTCTGGCGAGGATGAA
ATTGAAGACGCTGAAGAATCTGAACAAGCTGAGAGGTCTAGCGTGAAACG
TCGCCGCATTATTATTGCGAGCCCCAGTGATGAAGAACATGATGGAAAAG
TTCAGAGCAATGACGACTCAAGTGAGAACAAAACAGAGAAGCCCAAAAAC
CAAAGTAACTGCTCATCCAATGCCAGTAAATTGAGCGAAGCGGCCCAACT
GTTAAACGTCAGTGAGGAAAAATCTTCCATCTCGGAAACCGAGCTGGAAA
GATCTCGCCAAGTCGCTCTCAACGAACTGAACAAATCGGAGCGGTTTAAC
AAGACAGAAACGCAACTCGATATCAGCGTCATGGAGGTAGACTCCTCGGA
TCACGACGAGGAGGAGAAGACAGAGAAGGTTGGAGCCAAGAACAACAGAA
GCCTGTACGAAATCGTGGATTCTGATGACGGGGAAGAGCAAGATCAAGAC
CAAAGTGATGCAGATAAACCAGCTGAAAGCGAAAACCATTCCGAAATTAA
AAAATCTACATCTTTCATGGACCAAATGTCTGGAGCCAAAGGCAACAAAA
GCGTATACGAAATAATGGATTCTTATGAAACTGAAGACCCTAAGGAGGCT
GGTAAAAACGAGGAGTCTGATAAGGACAAACCGGCCGAAAACGGGAAGTC
TGATAAAGACAAACAAGCCGAAACCGAGATGTCTGATGAAGATAAACCAT
CTGAAATCAAAAGCCCTTCCACAATCAAAAAATCCATAATTTCAACTGCG
GATGAAGAAGCTCTGCTCGCCGAATTGGCCTCTAGTGATCTAAGCCATTT
GGAAAAAATGTTTAACCCTCTACAGAAATCCCGCCGCCAGTCCTTACATG
TCCCCAGTCCCGAGCTGGCAGCCAAGAATCCCAAACTGAGACGCCGTAGT
GAACGGGTTGAAGTTGGCAATGACTTCTGCCCCTCGCAGTCCTTTGTTGA
CATGGTGGCCGAGAAAAAGAGGCAGAAAAACAAGCGCAAGCGCCTGTCGA
AAAGCCTATCAGGCGCACCAGAGGATCTTGAGGAAATGGAGATTAAGCAC
GAGCGCAAGCGCCTTAAGAGCTCACATGGTGCTTCCACGGATTCAATGGA
GGAGGACAACGAAAACGAAACAATGACTGTCGCCGAGGAACATCACAGCG
ACGGGGAAGTCTCGAATGGTGAAGTTCCTATTGAAGAAAAGCCCACTACT
TCATCTGAGAAACCATCTGCGTCGGAATTACCTGAAGAAGAAGAAACTGT
CGCCGTTGAGGAGCTTCTCATGGAGAAGCCGAAAACTTGCGATTCACCGC
GATCCGAGGAAAGACCGACAGAAATTGTGACTTCAAAACCGAAGGGTATG
GCGCCGGTCAAGGTGGAGAAGACTGCCGAATATTACTTGGCATACTGTCA
CAACCTCCTGGAAGCTGCCAACGAGGCTAAGTTAAAGGAAAAGAAAGAGC
ATCTTGCCAGCGGAGCAAAGCAAAAGAAGCCAAAGCGAATTGCTGCGCAA
GCGCCATCCAAGCTCCTGGGCACCATCGGCTCAGAATCGGAAACCAACAC
AGCGAAATCGTCCAAGCAGCCACCGGCGCTGAAGAAGGATGTAAAGCGCC
TACAGGCAGCGCGCCAGGCTGTGAGTCATGCTGTTAATCTTCTGGCGCCA
CCAAAAGCCACCGAAGCAGAGCCACGCACGCTCTCGCGCAAATTGTCGCC
ACAGCCGCCAGTGGTGGACAAGAAATCAGCCAAACAGAAGAAGGGGAAGA
AGAAGCAAAAGCCCCAGGAGGCATCACCGCTAAAGAGTTCCGATGAGGAG
AACCACGGCCATCGTATTCGAACAAATGCTGGCTACGTGACGGTGGTCGA
TGAGCCGCCCACTAAAGTTCCCAAAATCGAGCTGATTAAGACAAGTTCGG
GCATGGTTCGAGTTGAGCCGTGCACACCCAAACAGAAGTATTTCCGCGAG
CTGCCGCCCACACCGAAAATGCATGGGTTCCGCGAGGAGCCAGGACCCTC
CGGGATGTCAAGGAAGCGGGCCAAGCACGCAGCACCAAAGGTCGAACACA
ATTCCGCCAAACAGGCGGCGCTGCGCTTCAAGGAGCAGATCTTTGCTCGC
AGATCTGCAAGCTTTCTAGACCAT
BO33026.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:01:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sle-RB | 4293 | CG12819-PB | 1..4290 | 17..4306 | 21435 | 100 | Plus |
| sle-RA | 4263 | CG12819-PA | 7..4260 | 53..4306 | 21255 | 100 | Plus |
| CG12592-RA | 2025 | CG12592-PA | 270..1471 | 2239..3440 | 5950 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:01:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sle-RB | 4775 | CG12819-RB | 163..4452 | 17..4306 | 21435 | 100 | Plus |
| sle-RA | 4676 | CG12819-RA | 100..4353 | 53..4306 | 21255 | 100 | Plus |
| CG12592-RA | 2407 | CG12592-RA | 331..1532 | 2239..3440 | 5950 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:01:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10333650..10337159 | 140..3649 | 17550 | 100 | Plus |
| 3R | 32079331 | 3R | 10338732..10339933 | 2239..3440 | 5950 | 99.7 | Plus |
| 3R | 32079331 | 3R | 10337506..10337942 | 3870..4306 | 2185 | 100 | Plus |
| 3R | 32079331 | 3R | 10340109..10340548 | 3870..4306 | 2090 | 98.9 | Plus |
| 3R | 32079331 | 3R | 10337220..10337443 | 3648..3871 | 1120 | 100 | Plus |
| 3R | 32079331 | 3R | 10339944..10340046 | 3769..3871 | 515 | 100 | Plus |
| 3R | 32079331 | 3R | 10333496..10333586 | 53..143 | 440 | 98.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:01:38 has no hits.
BO33026.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-30 10:23:33 Download gff for
BO33026.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sle-RB | 107..4396 | 17..4308 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:37:31 Download gff for
BO33026.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sle-RB | 163..4452 | 17..4308 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:55:44 Download gff for
BO33026.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sle-RB | 163..4452 | 17..4308 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:55:44 Download gff for
BO33026.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10333277..10333313 | 17..53 | 100 | -> | Plus |
| 3R | 10333497..10333583 | 54..140 | 98 | -> | Plus |
| 3R | 10333651..10337159 | 141..3649 | 100 | -> | Plus |
| 3R | 10337222..10337443 | 3650..3871 | 100 | -> | Plus |
| 3R | 10337508..10337942 | 3872..4308 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:37:31 Download gff for
BO33026.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6158999..6159035 | 17..53 | 100 | -> | Plus |
| arm_3R | 6159219..6159305 | 54..140 | 98 | -> | Plus |
| arm_3R | 6162944..6163165 | 3650..3871 | 100 | -> | Plus |
| arm_3R | 6159373..6162881 | 141..3649 | 100 | -> | Plus |
| arm_3R | 6163230..6163664 | 3872..4308 | 99 | | Plus |
BO33026.pep Sequence
Translation from 16 to 4324
> BO33026.pep
MDDNTENTDGKRVTRARTRRLSLLETDSRPSTPQLDTVAELGTASPRATR
RTRLNSSTLDVRTPTRTRRASLARGETPEPTTPSSVKRTARTPAKNTRSV
RQQLTLTEEPEENEVKQEKPSPSPSPVPKEGKGKAQRKPSVSPSPGRTLT
PNQQSDEKRVTRSMSQTPPMPTRSSSNTPRDLNDSPKVEQKAKPNIKTTP
KVAVRLEKLSMDKFSGKKMEKAKPLIVPDELKDNGVVEEQNKSITEAHSQ
APETHESAQPDKDAGKQSFLKSFTTLSKIQGSSKALHPDESADTITKITP
TSTSKKIEENMDDVFETLRVESPKVERKIETLQKVHTVGTPEIKEKDEPV
GVDNEIKTKTETPQKIEPPIIESKVETQQLIDHPQIEKKRDTPQNVSTVD
LMDTSPEKDESMEDQEFLDAEDSIVQLEPQTDEPVEKPKELEFVDLDDDE
PVFPSEAPKYVEDSKEVHPDDSMDDDKQNKIDVTEVIHLPSIRARAVRSP
AVEQKKSVDFNNDTDDLEVEKKRFPKTPGREKVPVCRILTPKPETPLKLA
LQKGRNSSTPILKDQERGLSNSTEELHPAPPQIDAIKPFDELESKNAKDE
MVEQSPMSKQKAENKILARLESFEEDVEDHGNEEENEEEHEEDKSISEFV
DLEAEDAGKDYMSGDSMDSSLRREMEENEIPIDGESVGSKDTEESTPEES
DGDDSFIVSDNEDEEDLGQLCYSSGEDEIEDAEESEQAERSSVKRRRIII
ASPSDEEHDGKVQSNDDSSENKTEKPKNQSNCSSNASKLSEAAQLLNVSE
EKSSISETELERSRQVALNELNKSERFNKTETQLDISVMEVDSSDHDEEE
KTEKVGAKNNRSLYEIVDSDDGEEQDQDQSDADKPAESENHSEIKKSTSF
MDQMSGAKGNKSVYEIMDSYETEDPKEAGKNEESDKDKPAENGKSDKDKQ
AETEMSDEDKPSEIKSPSTIKKSIISTADEEALLAELASSDLSHLEKMFN
PLQKSRRQSLHVPSPELAAKNPKLRRRSERVEVGNDFCPSQSFVDMVAEK
KRQKNKRKRLSKSLSGAPEDLEEMEIKHERKRLKSSHGASTDSMEEDNEN
ETMTVAEEHHSDGEVSNGEVPIEEKPTTSSEKPSASELPEEEETVAVEEL
LMEKPKTCDSPRSEERPTEIVTSKPKGMAPVKVEKTAEYYLAYCHNLLEA
ANEAKLKEKKEHLASGAKQKKPKRIAAQAPSKLLGTIGSESETNTAKSSK
QPPALKKDVKRLQAARQAVSHAVNLLAPPKATEAEPRTLSRKLSPQPPVV
DKKSAKQKKGKKKQKPQEASPLKSSDEENHGHRIRTNAGYVTVVDEPPTK
VPKIELIKTSSGMVRVEPCTPKQKYFRELPPTPKMHGFREEPGPSGMSRK
RAKHAAPKVEHNSAKQAALRFKEQIFARRSASFLDH
BO33026.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:20:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sle-PB | 1430 | CG12819-PB | 1..1430 | 1..1430 | 7269 | 100 | Plus |
| sle-PA | 1420 | CG12819-PA | 3..1420 | 13..1430 | 7203 | 100 | Plus |
| CG12592-PA | 674 | CG12592-PA | 88..549 | 739..1188 | 1995 | 87.7 | Plus |
| Strn-Mlck-PT | 7905 | CG44162-PT | 3699..5033 | 79..1374 | 356 | 19.2 | Plus |
| Strn-Mlck-PV | 7944 | CG44162-PV | 3738..5072 | 79..1374 | 356 | 19.2 | Plus |
| Strn-Mlck-PT | 7905 | CG44162-PT | 4089..5263 | 79..1299 | 341 | 19.5 | Plus |
| Strn-Mlck-PT | 7905 | CG44162-PT | 2959..4232 | 107..1415 | 304 | 17.8 | Plus |
| Strn-Mlck-PT | 7905 | CG44162-PT | 2211..3214 | 276..1328 | 223 | 20.5 | Plus |
