Clone BO33083 Report

Search the DGRC for BO33083

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:330
Well:83
Vector:pDNR-Dual
Associated Gene/TranscriptCG3499-RC
Protein status:BO33083.pep: Imported from assembly
Sequenced Size:2254

Clone Sequence Records

BO33083.complete Sequence

2254 bp assembled on 2012-07-30

GenBank Submission: KX799725

> BO33083.complete
GAAGTTATCAGTCGACATGTTTTCCACCACCACACACTCCGTGCCCTACC
TGTACCTAGGCAACTTCAGCAGAAAGCCGCACTACTACTCCGTTAATCGA
ACCAAGCTGCACGGGAGCGCGGGAGCTGCCCGGTTGTCCAAGTCCACGTC
CACGTCCAGCCGGAGTCATGACCTAGTGCTCGACCTGCGGAACCTGCTGA
GCCGTTCGAGCGCCAGTATACAGGGCATGGTGGAGAGGGCGGCTCGACTG
AATGGCATTCTCGACCGGCGGCTGGTCGATGATGTGCTGGCCAAGGTGAC
GAGCATGCTGCCCTCCATGCGCGATGTCCGAGTCACGTTGGAGGAGTCGG
CCACACAGATCGGTCGTGTCCAGCTGCAAAATTATCAGTTCGAAGTTTCG
CTAACCGGTGCAGCAGGTTCCGTGCCCACAGGCGCCAATGTCAAGGTGAT
TCCAACTATTACACCAGGTCTTCTTCGTCCGCTCTTCTCACAACAACAGC
TAAATCAGATACGTGGCTTTAAGACGGATCGTTCCATTGAGGCGGAACAA
AAGCGCAATCCCACAATGACCTCCCGACTAAAGAATGCTCTGGCCAACTC
GCCCCAGCGTCTGGATGGGGACACACCCCTTCAGGCTGAAAAACTGAGAC
GGCTGCTGGCCAAATCCGAAGAGCATGGATTTAATAAAGCCGAGAGCCTG
AAAATTGCCTTTGCCGAGGGCTACTTGGCCGCCGCTAACTCGGAGGACTC
TCCAAAATCAGGAAAAACTATGAAATATCTGAAGACTTTGCAGACTATCG
TCGTTATCGTCGTGTTCTTGGGCATTTTCCTGAGCTTCTTTACAACCTCC
AATGGATCCGTATTTCGCAGCATACAACTGGGCAACCAGGTTGAAGTGGA
CCCTGAGGAGATCAACGTCACTTTTGAGGATGTCAAGGGTTGCGACGAAG
CCAAGCAGGAGCTCAAGGAGGTCGTTGAATTCCTGAAGAGTCCGGAAAAG
TTCTCAAATTTGGGCGGAAAGCTTCCAAAGGGAGTGCTCCTGGTTGGCCC
GCCGGGTACTGGCAAAACACTGCTGGCCCGTGCCGTCGCCGGTGAAGCCA
AAGTTCCTTTCTTCCATGCTGCCGGACCGGAGTTCGACGAGGTGCTCGTA
GGCCAAGGAGCCAGACGAGTGCGTGATCTGTTCAAGGCAGCAAAGGCCCG
TGCCCCTTGTGTTATCTTCATTGACGAAATCGACTCGGTGGGCGCCAAGC
GAACCAACTCTGTGCTGCATCCTTACGCCAATCAGACCATCAATCAGCTG
CTCTCCGAGATGGATGGCTTCCATCAGAACGCTGGCGTCATTGTTTTGGG
AGCCACCAATCGTCGCGACGATTTGGATCAGGCTCTGCTGCGTCCCGGCC
GATTTGATGTAGAAGTCATGGTGTCGACGCCCGATTTCACTGGACGTAAG
GAGATATTGTCTCTGTATCTGACGAAGATTTTGCACGATGAAATAGACTT
GGACATGCTGGCGCGCGGCACCTCTGGTTTTACTGGAGCGGATCTGGAAA
ACATGATTAACCAAGCGGCGTTAAGAGCTGCCATCGATGGAGCCGAAACG
GTCAGCATGAAGCATTTGGAAACGGCACGAGACAAAGTACTTATGGGACC
CGAGCGCAAGGCTCGTCTACCGGACGAGGAGGCCAACACCATAACCGCTT
ACCACGAGGGCGGCCACGCGATTGTGGCCTTCTACACCAAGGAGTCGCAT
CCGCTGCACAAGGTGACCATCATGCCCCGCGGACCCTCCCTTGGACACAC
CGCCTACATACCGGAGAAGGAGCGTTACCATGTCACAAAGGCACAGCTGC
TGGCCATGATGGACACCATGATGGGCGGTCGTGCTGCTGAGGAACTGGTC
TTCGGCACGGACAAGATTACGTCGGGAGCCAGCAGTGATCTCAAGCAGGC
AACCTCGATCGCGACGCATATGGTCAGGGACTGGGGCATGTCGGACAAGG
TCGGTCTTCGCACCATCGAGGCGTCAAAGGGTCTGGGCACCGGTGACACC
CTTGGTCCCAACACCATTGAAGCCGTGGACGCGGAGATCAAGCGCATCCT
CAGCGACAGCTACGAGCGGGCGAAGGCTATCCTGCGAAAACACACCAGGG
AGCACAAAGCGCTTGCGGAGGCGCTTCTCAAGTACGAGACTCTTGACGCC
GACGACATCAAGGCAATACTGAATGAAAGCCAGACGGCAAGCTTTCTAGA
CCAT

BO33083.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:12:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG3499-RC 2223 CG3499-PC 1..2220 17..2236 11100 100 Plus
CG3499-RD 2220 CG3499-PD 1..2217 17..2236 11020 99.9 Plus
CG3499-RB 2211 CG3499-PB 1..2208 17..2236 10850 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:12:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG3499-RC 2515 CG3499-RC 107..2326 17..2236 11100 100 Plus
CG3499-RD 2940 CG3499-RD 306..2522 17..2236 11020 99.9 Plus
CG3499-RB 2503 CG3499-RB 107..2314 17..2236 10850 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:12:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22883165..22883827 2236..1574 3315 100 Minus
2R 25286936 2R 22885414..22885812 441..43 1995 100 Minus
2R 25286936 2R 22883901..22884291 1575..1185 1955 100 Minus
2R 25286936 2R 22884348..22884665 1184..867 1590 100 Minus
2R 25286936 2R 22885053..22885243 692..502 955 100 Minus
2R 25286936 2R 22884908..22885000 784..692 465 100 Minus
2R 25286936 2R 22884720..22884804 867..783 425 100 Minus
2R 25286936 2R 22885297..22885356 501..442 300 100 Minus
Blast to na_te.dros performed on 2014-11-28 12:12:17 has no hits.

BO33083.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-30 10:23:54 Download gff for BO33083.complete
Subject Subject Range Query Range Percent Splice Strand
CG3499-RC 398..2610 24..2238 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:49 Download gff for BO33083.complete
Subject Subject Range Query Range Percent Splice Strand
CG3499-RC 114..2326 24..2238 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:59:29 Download gff for BO33083.complete
Subject Subject Range Query Range Percent Splice Strand
CG3499-RC 114..2326 24..2238 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:59:29 Download gff for BO33083.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22883163..22883825 1576..2238 99 <- Minus
2R 22883901..22884291 1185..1575 100 <- Minus
2R 22884348..22884664 868..1184 100 <- Minus
2R 22884720..22884802 785..867 100 <- Minus
2R 22884908..22885000 692..784 100 <- Minus
2R 22885054..22885243 502..691 100 <- Minus
2R 22885297..22885356 442..501 100 <- Minus
2R 22885414..22885811 44..441 100 <- Minus
2R 22885916..22885935 24..43 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:49 Download gff for BO33083.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18770686..18771348 1576..2238 99 <- Minus
arm_2R 18771424..18771814 1185..1575 100 <- Minus
arm_2R 18771871..18772187 868..1184 100 <- Minus
arm_2R 18772243..18772325 785..867 100 <- Minus
arm_2R 18772431..18772523 692..784 100 <- Minus
arm_2R 18772577..18772766 502..691 100 <- Minus
arm_2R 18772820..18772879 442..501 100 <- Minus
arm_2R 18772937..18773334 44..441 100 <- Minus
arm_2R 18773439..18773458 24..43 100   Minus

BO33083.pep Sequence

Translation from 16 to 2254

> BO33083.pep
MFSTTTHSVPYLYLGNFSRKPHYYSVNRTKLHGSAGAARLSKSTSTSSRS
HDLVLDLRNLLSRSSASIQGMVERAARLNGILDRRLVDDVLAKVTSMLPS
MRDVRVTLEESATQIGRVQLQNYQFEVSLTGAAGSVPTGANVKVIPTITP
GLLRPLFSQQQLNQIRGFKTDRSIEAEQKRNPTMTSRLKNALANSPQRLD
GDTPLQAEKLRRLLAKSEEHGFNKAESLKIAFAEGYLAAANSEDSPKSGK
TMKYLKTLQTIVVIVVFLGIFLSFFTTSNGSVFRSIQLGNQVEVDPEEIN
VTFEDVKGCDEAKQELKEVVEFLKSPEKFSNLGGKLPKGVLLVGPPGTGK
TLLARAVAGEAKVPFFHAAGPEFDEVLVGQGARRVRDLFKAAKARAPCVI
FIDEIDSVGAKRTNSVLHPYANQTINQLLSEMDGFHQNAGVIVLGATNRR
DDLDQALLRPGRFDVEVMVSTPDFTGRKEILSLYLTKILHDEIDLDMLAR
GTSGFTGADLENMINQAALRAAIDGAETVSMKHLETARDKVLMGPERKAR
LPDEEANTITAYHEGGHAIVAFYTKESHPLHKVTIMPRGPSLGHTAYIPE
KERYHVTKAQLLAMMDTMMGGRAAEELVFGTDKITSGASSDLKQATSIAT
HMVRDWGMSDKVGLRTIEASKGLGTGDTLGPNTIEAVDAEIKRILSDSYE
RAKAILRKHTREHKALAEALLKYETLDADDIKAILNESQTASFLDH

BO33083.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:22:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG3499-PC 740 CG3499-PC 1..740 1..740 3719 100 Plus
CG3499-PD 739 CG3499-PD 1..739 1..740 3703 99.9 Plus
CG3499-PB 736 CG3499-PB 1..736 1..740 3675 99.5 Plus
CG6512-PB 697 CG6512-PB 175..634 280..735 954 43.7 Plus
CG6512-PA 826 CG6512-PA 304..763 280..735 954 43.7 Plus