BO33083.complete Sequence
2254 bp assembled on 2012-07-30
GenBank Submission: KX799725
> BO33083.complete
GAAGTTATCAGTCGACATGTTTTCCACCACCACACACTCCGTGCCCTACC
TGTACCTAGGCAACTTCAGCAGAAAGCCGCACTACTACTCCGTTAATCGA
ACCAAGCTGCACGGGAGCGCGGGAGCTGCCCGGTTGTCCAAGTCCACGTC
CACGTCCAGCCGGAGTCATGACCTAGTGCTCGACCTGCGGAACCTGCTGA
GCCGTTCGAGCGCCAGTATACAGGGCATGGTGGAGAGGGCGGCTCGACTG
AATGGCATTCTCGACCGGCGGCTGGTCGATGATGTGCTGGCCAAGGTGAC
GAGCATGCTGCCCTCCATGCGCGATGTCCGAGTCACGTTGGAGGAGTCGG
CCACACAGATCGGTCGTGTCCAGCTGCAAAATTATCAGTTCGAAGTTTCG
CTAACCGGTGCAGCAGGTTCCGTGCCCACAGGCGCCAATGTCAAGGTGAT
TCCAACTATTACACCAGGTCTTCTTCGTCCGCTCTTCTCACAACAACAGC
TAAATCAGATACGTGGCTTTAAGACGGATCGTTCCATTGAGGCGGAACAA
AAGCGCAATCCCACAATGACCTCCCGACTAAAGAATGCTCTGGCCAACTC
GCCCCAGCGTCTGGATGGGGACACACCCCTTCAGGCTGAAAAACTGAGAC
GGCTGCTGGCCAAATCCGAAGAGCATGGATTTAATAAAGCCGAGAGCCTG
AAAATTGCCTTTGCCGAGGGCTACTTGGCCGCCGCTAACTCGGAGGACTC
TCCAAAATCAGGAAAAACTATGAAATATCTGAAGACTTTGCAGACTATCG
TCGTTATCGTCGTGTTCTTGGGCATTTTCCTGAGCTTCTTTACAACCTCC
AATGGATCCGTATTTCGCAGCATACAACTGGGCAACCAGGTTGAAGTGGA
CCCTGAGGAGATCAACGTCACTTTTGAGGATGTCAAGGGTTGCGACGAAG
CCAAGCAGGAGCTCAAGGAGGTCGTTGAATTCCTGAAGAGTCCGGAAAAG
TTCTCAAATTTGGGCGGAAAGCTTCCAAAGGGAGTGCTCCTGGTTGGCCC
GCCGGGTACTGGCAAAACACTGCTGGCCCGTGCCGTCGCCGGTGAAGCCA
AAGTTCCTTTCTTCCATGCTGCCGGACCGGAGTTCGACGAGGTGCTCGTA
GGCCAAGGAGCCAGACGAGTGCGTGATCTGTTCAAGGCAGCAAAGGCCCG
TGCCCCTTGTGTTATCTTCATTGACGAAATCGACTCGGTGGGCGCCAAGC
GAACCAACTCTGTGCTGCATCCTTACGCCAATCAGACCATCAATCAGCTG
CTCTCCGAGATGGATGGCTTCCATCAGAACGCTGGCGTCATTGTTTTGGG
AGCCACCAATCGTCGCGACGATTTGGATCAGGCTCTGCTGCGTCCCGGCC
GATTTGATGTAGAAGTCATGGTGTCGACGCCCGATTTCACTGGACGTAAG
GAGATATTGTCTCTGTATCTGACGAAGATTTTGCACGATGAAATAGACTT
GGACATGCTGGCGCGCGGCACCTCTGGTTTTACTGGAGCGGATCTGGAAA
ACATGATTAACCAAGCGGCGTTAAGAGCTGCCATCGATGGAGCCGAAACG
GTCAGCATGAAGCATTTGGAAACGGCACGAGACAAAGTACTTATGGGACC
CGAGCGCAAGGCTCGTCTACCGGACGAGGAGGCCAACACCATAACCGCTT
ACCACGAGGGCGGCCACGCGATTGTGGCCTTCTACACCAAGGAGTCGCAT
CCGCTGCACAAGGTGACCATCATGCCCCGCGGACCCTCCCTTGGACACAC
CGCCTACATACCGGAGAAGGAGCGTTACCATGTCACAAAGGCACAGCTGC
TGGCCATGATGGACACCATGATGGGCGGTCGTGCTGCTGAGGAACTGGTC
TTCGGCACGGACAAGATTACGTCGGGAGCCAGCAGTGATCTCAAGCAGGC
AACCTCGATCGCGACGCATATGGTCAGGGACTGGGGCATGTCGGACAAGG
TCGGTCTTCGCACCATCGAGGCGTCAAAGGGTCTGGGCACCGGTGACACC
CTTGGTCCCAACACCATTGAAGCCGTGGACGCGGAGATCAAGCGCATCCT
CAGCGACAGCTACGAGCGGGCGAAGGCTATCCTGCGAAAACACACCAGGG
AGCACAAAGCGCTTGCGGAGGCGCTTCTCAAGTACGAGACTCTTGACGCC
GACGACATCAAGGCAATACTGAATGAAAGCCAGACGGCAAGCTTTCTAGA
CCAT
BO33083.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:12:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3499-RC | 2223 | CG3499-PC | 1..2220 | 17..2236 | 11100 | 100 | Plus |
CG3499-RD | 2220 | CG3499-PD | 1..2217 | 17..2236 | 11020 | 99.9 | Plus |
CG3499-RB | 2211 | CG3499-PB | 1..2208 | 17..2236 | 10850 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:12:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3499-RC | 2515 | CG3499-RC | 107..2326 | 17..2236 | 11100 | 100 | Plus |
CG3499-RD | 2940 | CG3499-RD | 306..2522 | 17..2236 | 11020 | 99.9 | Plus |
CG3499-RB | 2503 | CG3499-RB | 107..2314 | 17..2236 | 10850 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:12:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22883165..22883827 | 2236..1574 | 3315 | 100 | Minus |
2R | 25286936 | 2R | 22885414..22885812 | 441..43 | 1995 | 100 | Minus |
2R | 25286936 | 2R | 22883901..22884291 | 1575..1185 | 1955 | 100 | Minus |
2R | 25286936 | 2R | 22884348..22884665 | 1184..867 | 1590 | 100 | Minus |
2R | 25286936 | 2R | 22885053..22885243 | 692..502 | 955 | 100 | Minus |
2R | 25286936 | 2R | 22884908..22885000 | 784..692 | 465 | 100 | Minus |
2R | 25286936 | 2R | 22884720..22884804 | 867..783 | 425 | 100 | Minus |
2R | 25286936 | 2R | 22885297..22885356 | 501..442 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:12:17 has no hits.
BO33083.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-30 10:23:54 Download gff for
BO33083.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3499-RC | 398..2610 | 24..2238 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:49 Download gff for
BO33083.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3499-RC | 114..2326 | 24..2238 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:59:29 Download gff for
BO33083.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3499-RC | 114..2326 | 24..2238 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:59:29 Download gff for
BO33083.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22883163..22883825 | 1576..2238 | 99 | <- | Minus |
2R | 22883901..22884291 | 1185..1575 | 100 | <- | Minus |
2R | 22884348..22884664 | 868..1184 | 100 | <- | Minus |
2R | 22884720..22884802 | 785..867 | 100 | <- | Minus |
2R | 22884908..22885000 | 692..784 | 100 | <- | Minus |
2R | 22885054..22885243 | 502..691 | 100 | <- | Minus |
2R | 22885297..22885356 | 442..501 | 100 | <- | Minus |
2R | 22885414..22885811 | 44..441 | 100 | <- | Minus |
2R | 22885916..22885935 | 24..43 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:49 Download gff for
BO33083.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18770686..18771348 | 1576..2238 | 99 | <- | Minus |
arm_2R | 18771424..18771814 | 1185..1575 | 100 | <- | Minus |
arm_2R | 18771871..18772187 | 868..1184 | 100 | <- | Minus |
arm_2R | 18772243..18772325 | 785..867 | 100 | <- | Minus |
arm_2R | 18772431..18772523 | 692..784 | 100 | <- | Minus |
arm_2R | 18772577..18772766 | 502..691 | 100 | <- | Minus |
arm_2R | 18772820..18772879 | 442..501 | 100 | <- | Minus |
arm_2R | 18772937..18773334 | 44..441 | 100 | <- | Minus |
arm_2R | 18773439..18773458 | 24..43 | 100 | | Minus |
BO33083.pep Sequence
Translation from 16 to 2254
> BO33083.pep
MFSTTTHSVPYLYLGNFSRKPHYYSVNRTKLHGSAGAARLSKSTSTSSRS
HDLVLDLRNLLSRSSASIQGMVERAARLNGILDRRLVDDVLAKVTSMLPS
MRDVRVTLEESATQIGRVQLQNYQFEVSLTGAAGSVPTGANVKVIPTITP
GLLRPLFSQQQLNQIRGFKTDRSIEAEQKRNPTMTSRLKNALANSPQRLD
GDTPLQAEKLRRLLAKSEEHGFNKAESLKIAFAEGYLAAANSEDSPKSGK
TMKYLKTLQTIVVIVVFLGIFLSFFTTSNGSVFRSIQLGNQVEVDPEEIN
VTFEDVKGCDEAKQELKEVVEFLKSPEKFSNLGGKLPKGVLLVGPPGTGK
TLLARAVAGEAKVPFFHAAGPEFDEVLVGQGARRVRDLFKAAKARAPCVI
FIDEIDSVGAKRTNSVLHPYANQTINQLLSEMDGFHQNAGVIVLGATNRR
DDLDQALLRPGRFDVEVMVSTPDFTGRKEILSLYLTKILHDEIDLDMLAR
GTSGFTGADLENMINQAALRAAIDGAETVSMKHLETARDKVLMGPERKAR
LPDEEANTITAYHEGGHAIVAFYTKESHPLHKVTIMPRGPSLGHTAYIPE
KERYHVTKAQLLAMMDTMMGGRAAEELVFGTDKITSGASSDLKQATSIAT
HMVRDWGMSDKVGLRTIEASKGLGTGDTLGPNTIEAVDAEIKRILSDSYE
RAKAILRKHTREHKALAEALLKYETLDADDIKAILNESQTASFLDH
BO33083.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:22:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3499-PC | 740 | CG3499-PC | 1..740 | 1..740 | 3719 | 100 | Plus |
CG3499-PD | 739 | CG3499-PD | 1..739 | 1..740 | 3703 | 99.9 | Plus |
CG3499-PB | 736 | CG3499-PB | 1..736 | 1..740 | 3675 | 99.5 | Plus |
CG6512-PB | 697 | CG6512-PB | 175..634 | 280..735 | 954 | 43.7 | Plus |
CG6512-PA | 826 | CG6512-PA | 304..763 | 280..735 | 954 | 43.7 | Plus |