BO33086.complete Sequence
5560 bp assembled on 2012-07-27
GenBank Submission: KX794897
> BO33086.complete
GAAGTTATCAGTCGACATGTCGGACAAGGTGAGCACATCCTTGGCAGCCC
AGCTGCATTCCCATGCCCTGGCGTCGGCGGAAGCAGGTGGTATTGGTGGA
GTGAACGGTGGCCCAATTGCCTGCCATGCCAGCACGGATAAGGATGCCCA
GGCTCCACCGCTCCAGTTTGAAATGGATGCTCCGGCGGCCGCCATCAGTG
CCCAGCTAAACTTCAAAATCGTGCCCGCTGACAGTTTGCCAGGCCTGAGT
TATCAGGACATGTTCGCCTCCATGAATACATCACAAATCTCCAATGCCTC
CACGGAGTCCAGCTGCAGTCCGCCCATCCAGGGCGCTGTACCGCCTCCAA
AGCCCAGTCGTCACATGGCCGTACAGCCGCTGAATAGCAAATCGTGCCGA
TTTCCCAAGCTAGAGGAGTGCGCCCACTTCCACTACGAAAGGGTCCAGCT
GGGTCCGTTATCCGTGCAGCTGTTAGATGACAAGTCGGAGCACATGGGCA
GCAGTATTGCTTCCCAATCTCTTGGCGGTGATTTACCACACAGTTCGCTG
CGCAGCTTTTCTCCGGAGAGCTGTTGGTTTATCATCCGCGTGTGCCCACA
GCGCTGCGAACCGTTCCTGATCAAGCGGAGCTTCGAGAACATGCAACTGC
TGGACGAGATGCTCCACCGGTGCGTATACGACCGGAAAATTAGTGGACTG
CGCAACATGGAGGAACTGGCGGCCGAGCTGCCCAGCGAATCGGATGTGGA
ATATGCGGTGGCCAAGTACCTGGAGCGTTTCTCGAAGATCGCCTCCGATT
CACTGACCTGCGGCACAATTCTGACCTGGCTACAGCTGGACAATAAGGGC
AGGCGACTACCGCTGGCGGATGGTGAGACACAGAGGACTATCAACACACC
TGCGGTGGGTGCCGCCTACGGAGTGAGGCGTTATCAGGCCCAAGCTCCGG
ACGAGATCAACATTGAGGTGGGCGACATGATTTCCGTGATCGACATGCCC
AGTCCGGCGGAGTCGATTTGGTGGCGCGGCAAGAAGTCGCATCTGCAGAA
GTCCCTCTACGAAGTGGGTTTTTTCCCTCAATCCTGTGTGGCCACTATCG
GCGATAAGGTGCCCAGGAATTTTCCAATGCCAGCACCGCTAGTTGGTCAC
TTGGATGCTTCACCCACTAAGCCGGTGCTGCGTAAGCACGGCAAACTGAT
CGCCTTCTTCCGTTCCTTTATCCTGTCGCGACCATCACGTCGGCGCCTAA
AACAAAGTGGAATTTACCGCGAACGCGTCTTTAACTGTGACCTGTCCGAG
CATCTGCTGAACAGCGGTCAGGACATACCCATGGTTCTCCGATCCTGTGC
GGAGTTCATCGAAAACTATGGCGTTATAGATGGAATTTACCGTCTTTCCG
GCATCACCTCCAACATCCAGCGGCTAAGGCGCGCCTTCGATGAGGAGCGT
GTACCGGATTTGGGTAACCCTGAAATGAAGCAGGATATCCATGCAGTAAG
TTCGCTGCTCAAGATGTACTTCCGCGAGCTTCCAAATCCCCTGTGCACCT
ACCAACTGTACGACAACTTTGTAGAGGCCATCCAAGTGAAGGCCGACGAG
GCGGACGAGCGGCTGCGACTTATGAAGGAGACGGTGCTCAAGCTGCCTCC
GCCACACTATCGGACCCTAAAATATCTGGCCGAGCACTTGTACAAGGTGT
CACAACACCACGGTCGCACCGGAATGACGGACAAGAATCTGGCCATTGTT
TGGGCGCCAAATTTACTGCGCTCACCTGCCCTGGAATCGGGGGGCGTGGC
TGCTCTGCGTGGCGTTGGCGTGCAGGCGGTGGTCACCGAGTACCTGATAC
GGAATTGCCATAACATCTTCGACGCTCTGGACGATCATCCGGCGCGACAC
AGCATGGTGGCGAGTGCTACGGCTGCTGCTGCGAATGCGGCTGGTGGTGA
GCTACGCCTGGAGTCACTTACCGACTGCGAAAGTCTGCTAGTGGAGCAGC
GGGAGCAAGATCAATCTTTGGGCGTGGTGGAACGGCCAAAGAGTCTGAGC
ACCGGTGGAGCCAAACTGATAAGCCTGGAGGAGGCCCAGGAAAGGCATTC
GCGAGTGGAGGGGGCTGACCTCAAGCAGTCGCTGCCCATTAGCATGTTGA
CCAGCGCTAGTAGCAACGCTGCCTCCAACATTGGCTCCTACATCGAAGTG
GGCGGTGGTCCATCCAGCTTGCCGGATAAATACCACACGGTGCTGTCGGC
CCCGCGCAGCTGGCAGAAACGTAAGCCGGACAAGACGCCGTCTTGGAAGT
CGATTTTCTCCCGCAGTCAGCGACAGGGTAATCCCGATCCTGGCCAGAAA
ATAACCACAGATGTCAAGGATTCCGTTGCTTCCCGCGTGAGCTTTGTGCA
GGCATCACATGCTCATGCTAGCAAGGAACTGACCAAGCATGACAAGCCTA
AATCTATTGAACTCCTGGAGACAACGAGCAATGAACGTGATCCGAAACCA
ATGGACCTGTGCATACGCTCCAATTCAATTGATAGCCTGCGCACTGTTGG
TCATTCGAGGAGCGTCTCGCATGACTCGTACTTCGATTTACTGCAGTCAC
CGCAAAGGGGTCACATGACGACATGTCCGTCGCGGGAGCTTTCCGAGCTA
GGTCTCAATTTCGACCGCGAAGAGCCGGAAATGCGCATCTTCTCAGAGAG
CGAATCTCTGGTTAGCTCACCGCGCGTGGGCAAGGAGAATGTTCCACCTG
CCTCTGGCTCCGCCACTCGTCGCATAATGCGCGCTCGTCCTGAGGATTTC
TCCAGCCAGACAAATAGCGTTAATCCCAGTCCTAAAAAGCAGCCACGCCT
CAATCTCCTATCGCCCAGCTCGGCCAGGACGATGCCCCCACCGCCTCTTT
CAGCGCCTGGAACTGCATCTTCCTCCTGTGGACATGAATCCGGTGGAGCT
GAAAACTGCTGTAAGCGATACAAGCTGGAAGATCAGTTGTGTGACATTCA
GTTCATTGACTGTGGAACTCCCGAAAATGTGCCCACCACTCAACAGCAGT
TCGCCAGTGTTGAAGTGCACCCGCCACCAAAGCCAGCTAGGGCAAACCAA
TCTCCCATATCGTCGTCGAATGGTGCATCTGTAGGCTCCTCCTCCTCGTC
GACCCGCTACAGCTATCCGTCTGTGCAGCTGGGGGCCAAACGGAAAGAAC
AGCAGGATGCTAAGGAGCGTTTCAGCTACCAGGGAACCTTTACGCAGCCA
GGACAGAAACAGGAATCTTCAGCTCCAAGACCTGTGCATACCAACAACGG
TGCTACTCTACGAAAACCTCGAGTGGAACCCGTCGAAGATGGTCAGATCA
AGCTGCATGTGCCTACGCCTACAACACCTGCCCGCAGTCCCCGGTACTCC
TTGTTGTTGTGCGACACCGAAAGCTCCGATAACAGTTCGGCGGTAAATAC
ACCGCAATATGACATGGAGCCCCTTATGCTGACATCGGCCATGTCTGGCG
TATCCGGTGTTTCATCCAATGTACAGCAGCAGCAGCTGCTTTTAGGTGTG
GATGCGTCCAGCAGTTACCTAGGCAGCTCGCACGAGAGCTTGGGACAGAA
CATCAACAACCACCATGATGCTGAGCAGCGTGATATGAATGCCCTAAAAA
GGGAGCTATCCTTGGACCTTAACCCACTGCAGCCGCGCTTACCACAGCCC
GCAAATCGAGCTGCCACTTTACCGGTTAAAGATCAGCTGCAGGCTGCTGC
AGCGGCCATGTGCTCATCGCCCAACAATTCCAATTTTACGGACAATACTA
GTCAGTCAGTGACACCGAGCGAGTATGGTTATCAGCACTTGCAGCGACAG
CTAAGCATGCACTCTCTGCTGGCGACTGATGAGAGTTCGCCCGTGTACGA
GGACTTCGAACAGACCCCCGTCAAGATGGTGCCCAGCCCCATAAAATCCA
CCATTAGCATCACATACAAGTCGCCCGAGAAGGAAAAGAAACCTTCGGCC
ATCTTAGAGACCAACTTCGATGAAAACACTGTATATGAGCAGGTGAAGCT
GTTCCGGAACTCGGTAACCGAGGTTAATCAAATGTTACATGAGCGTTCAA
GCCTGAAACAGATTGCCGAGGAGGAGCAGCACGATGGAGGTGCTTACAAG
GCAGCAGAGATGACGCAGCAACTGCTGCAGCTTGAACAGGAGCACCACGA
CCACGAAGAGCAGCAGGAGAAAGAGCCTGAGGATGAGGAGCAATCCCAGC
TACTTTACGAAAACATTGAGCTACGCAAACCGAAAACAGTTTACGAAAAT
CTACGTGGCGAGGAGATGAAATTCATTACAGAAGAACAGAAACCCAACGT
TGATAGAATTGAGCTTGATAGTTTAGACAGCTTGCCAGACAACATGGAAC
ACGAACAGTCGTCGCCCAGCAAATCGCCCACTTTCAGTGTCAAGGAGTTG
GCCAACAAATTCGAGAGCTCGCCTGTGGAGCAGCTGCCCAACTTTGATTT
TTCGGTGCGTGGCGGCTCGATGAAGAAACCTAACGAACTGAGCGTACCCA
AGACGATGCCCGCACCCGTGCCACTCAAGAAACTGAACAGCAGTGCCCAA
AAAATAACCCGCTCGTTGGATGAGAACGCCTTCGTCAGAGAGTTTGGGGG
CAAGCAACTACAAGATCTGTCTCTCTCTAACAAACTGCCCGAAGTAATGT
CAGAGGTCAACAGCCGGCGCAAGAGCTTTGACTTCACGCGACCTAAAACC
TTGAATCCACCAAAGCGGTTGCCTGGTATGAGCATTACCGAGGAGATATG
CCAGAAGCGTGTTGGCGAAATGGAGGCAATTACCCCCACCACCGAGAACC
GCATCTCACTCATCCAGCAGAATAATATGCCCAAAGAGCAGCAATCGTCG
GCTAATCAGTTCCTGCCCCCGGCGGGTCGAAAGAACGTATTAACAGGCGT
GGTCTTGGATCGTGAGCGCATCGACAAAATCAAGGAGGAGCGGCGTCAGC
AGCTAACGCAAAAGTACTACGGCGATACTCTCAAGTCTCGGTCGCGTACG
GAACTGAACTCTGAAGACAACTTCCCGGCTGCAGAATCCCTGCGAATCAA
GTCCAAGTCACGCGGCGATATGCATGCCTTGCAAAAGGATATCGACATGA
ACCTAAAGCAACTGAGCCGCGTCACTGGCGGCGGATCGGAGTGCACCCTC
CACACGGGCTTGAGCCAGGGTAACGGACAGGAGCATCTGGGACAACAGCG
CGTGCGCCGGATTTCCGACGAAAAGAACCAAAATTGTGATACCAGTAATG
GTGGCGTAAGTGGCATAACCTCCACTTCGCTACTCAGCGTCAAGACGACG
GCCCAGAAATATGGAAGCACCAGCAAGACGCCAGCGAATAAATTTGAACG
TAGTCAGCCCATGCCACGCGATCGCTTGCAGAGGAACTCCTTGGCCGAGA
GCAATGCAGGCACCAACAACAGAGAAAAGATCTCACCACAATTCTCAATA
CGCGACGTGACAGCGATGTTCGAATCTCGTTCACAAAATCAAGCAAGCTT
TCTAGACCAT
BO33086.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:52:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CdGAPr-RB | 5529 | CG10538-PB | 1..5526 | 17..5542 | 27630 | 100 | Plus |
CdGAPr-RD | 5532 | CG10538-PD | 1..5529 | 17..5542 | 27565 | 99.9 | Plus |
CdGAPr-RA | 5532 | CG10538-PA | 1..5529 | 17..5542 | 27565 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:52:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CdGAPr-RB | 6366 | CG10538-RB | 152..5678 | 16..5542 | 27635 | 100 | Plus |
CdGAPr-RD | 7824 | CG10538-RD | 224..5753 | 16..5542 | 27570 | 99.9 | Plus |
CdGAPr-RA | 7522 | CG10538-RA | 152..5681 | 16..5542 | 27570 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:52:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19777082..19778946 | 5466..3602 | 9325 | 100 | Minus |
2L | 23513712 | 2L | 19779400..19781026 | 3288..1662 | 8135 | 100 | Minus |
2L | 23513712 | 2L | 19781091..19782365 | 1663..389 | 6375 | 100 | Minus |
2L | 23513712 | 2L | 19782421..19782793 | 388..16 | 1865 | 100 | Minus |
2L | 23513712 | 2L | 19779018..19779330 | 3601..3289 | 1565 | 100 | Minus |
2L | 23513712 | 2L | 19776945..19777020 | 5542..5467 | 380 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 11:52:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6788..6872 | 4166..4250 | 164 | 65.9 | Plus |
BO33086.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-27 18:25:48 Download gff for
BO33086.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CdGAPr-RB | 171..5696 | 17..5544 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:09 Download gff for
BO33086.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CdGAPr-RB | 153..5678 | 17..5544 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:52:43 Download gff for
BO33086.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CdGAPr-RB | 153..5678 | 17..5544 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:52:43 Download gff for
BO33086.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19776943..19777020 | 5467..5544 | 97 | <- | Minus |
2L | 19777082..19778946 | 3602..5466 | 100 | <- | Minus |
2L | 19779018..19779330 | 3289..3601 | 100 | <- | Minus |
2L | 19779400..19781025 | 1663..3288 | 100 | <- | Minus |
2L | 19781092..19782365 | 389..1662 | 100 | <- | Minus |
2L | 19782421..19782792 | 17..388 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:09 Download gff for
BO33086.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19776943..19777020 | 5467..5544 | 97 | <- | Minus |
arm_2L | 19777082..19778946 | 3602..5466 | 100 | <- | Minus |
arm_2L | 19779018..19779330 | 3289..3601 | 100 | <- | Minus |
arm_2L | 19779400..19781025 | 1663..3288 | 100 | <- | Minus |
arm_2L | 19781092..19782365 | 389..1662 | 100 | <- | Minus |
arm_2L | 19782421..19782792 | 17..388 | 100 | | Minus |
BO33086.pep Sequence
Translation from 16 to 5560
> BO33086.pep
MSDKVSTSLAAQLHSHALASAEAGGIGGVNGGPIACHASTDKDAQAPPLQ
FEMDAPAAAISAQLNFKIVPADSLPGLSYQDMFASMNTSQISNASTESSC
SPPIQGAVPPPKPSRHMAVQPLNSKSCRFPKLEECAHFHYERVQLGPLSV
QLLDDKSEHMGSSIASQSLGGDLPHSSLRSFSPESCWFIIRVCPQRCEPF
LIKRSFENMQLLDEMLHRCVYDRKISGLRNMEELAAELPSESDVEYAVAK
YLERFSKIASDSLTCGTILTWLQLDNKGRRLPLADGETQRTINTPAVGAA
YGVRRYQAQAPDEINIEVGDMISVIDMPSPAESIWWRGKKSHLQKSLYEV
GFFPQSCVATIGDKVPRNFPMPAPLVGHLDASPTKPVLRKHGKLIAFFRS
FILSRPSRRRLKQSGIYRERVFNCDLSEHLLNSGQDIPMVLRSCAEFIEN
YGVIDGIYRLSGITSNIQRLRRAFDEERVPDLGNPEMKQDIHAVSSLLKM
YFRELPNPLCTYQLYDNFVEAIQVKADEADERLRLMKETVLKLPPPHYRT
LKYLAEHLYKVSQHHGRTGMTDKNLAIVWAPNLLRSPALESGGVAALRGV
GVQAVVTEYLIRNCHNIFDALDDHPARHSMVASATAAAANAAGGELRLES
LTDCESLLVEQREQDQSLGVVERPKSLSTGGAKLISLEEAQERHSRVEGA
DLKQSLPISMLTSASSNAASNIGSYIEVGGGPSSLPDKYHTVLSAPRSWQ
KRKPDKTPSWKSIFSRSQRQGNPDPGQKITTDVKDSVASRVSFVQASHAH
ASKELTKHDKPKSIELLETTSNERDPKPMDLCIRSNSIDSLRTVGHSRSV
SHDSYFDLLQSPQRGHMTTCPSRELSELGLNFDREEPEMRIFSESESLVS
SPRVGKENVPPASGSATRRIMRARPEDFSSQTNSVNPSPKKQPRLNLLSP
SSARTMPPPPLSAPGTASSSCGHESGGAENCCKRYKLEDQLCDIQFIDCG
TPENVPTTQQQFASVEVHPPPKPARANQSPISSSNGASVGSSSSSTRYSY
PSVQLGAKRKEQQDAKERFSYQGTFTQPGQKQESSAPRPVHTNNGATLRK
PRVEPVEDGQIKLHVPTPTTPARSPRYSLLLCDTESSDNSSAVNTPQYDM
EPLMLTSAMSGVSGVSSNVQQQQLLLGVDASSSYLGSSHESLGQNINNHH
DAEQRDMNALKRELSLDLNPLQPRLPQPANRAATLPVKDQLQAAAAAMCS
SPNNSNFTDNTSQSVTPSEYGYQHLQRQLSMHSLLATDESSPVYEDFEQT
PVKMVPSPIKSTISITYKSPEKEKKPSAILETNFDENTVYEQVKLFRNSV
TEVNQMLHERSSLKQIAEEEQHDGGAYKAAEMTQQLLQLEQEHHDHEEQQ
EKEPEDEEQSQLLYENIELRKPKTVYENLRGEEMKFITEEQKPNVDRIEL
DSLDSLPDNMEHEQSSPSKSPTFSVKELANKFESSPVEQLPNFDFSVRGG
SMKKPNELSVPKTMPAPVPLKKLNSSAQKITRSLDENAFVREFGGKQLQD
LSLSNKLPEVMSEVNSRRKSFDFTRPKTLNPPKRLPGMSITEEICQKRVG
EMEAITPTTENRISLIQQNNMPKEQQSSANQFLPPAGRKNVLTGVVLDRE
RIDKIKEERRQQLTQKYYGDTLKSRSRTELNSEDNFPAAESLRIKSKSRG
DMHALQKDIDMNLKQLSRVTGGGSECTLHTGLSQGNGQEHLGQQRVRRIS
DEKNQNCDTSNGGVSGITSTSLLSVKTTAQKYGSTSKTPANKFERSQPMP
RDRLQRNSLAESNAGTNNREKISPQFSIRDVTAMFESRSQNQASFLDH
BO33086.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:15:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CdGAPr-PB | 1842 | CG10538-PB | 1..1842 | 1..1842 | 9490 | 100 | Plus |
CdGAPr-PD | 1843 | CG10538-PD | 1..1843 | 1..1842 | 9478 | 99.9 | Plus |
CdGAPr-PA | 1843 | CG10538-PA | 1..1843 | 1..1842 | 9478 | 99.9 | Plus |
CdGAPr-PC | 1840 | CG10538-PC | 1..1840 | 1..1842 | 9462 | 99.8 | Plus |
RhoGAP5A-PA | 494 | CG3208-PA | 301..491 | 421..618 | 273 | 34 | Plus |