BO33103.complete Sequence
1702 bp assembled on 2012-09-18
GenBank Submission: KX794164
> BO33103.complete
GAAGTTATCAGTCGACATGATCCACTGGTCTCTGATTGTCAGTGCCCTGG
GCGTCTGCGTGGCCGTCTTGGGCGGCTACTGCGGCTGGATTCTCTTCCCC
AACATGGTACACAAAAAGGTCGAGCAGAGCGTTGTTATACAAGATGGCTC
GGAACAATTCAAACGATTTGTGAATTTACCTCAGCCATTGAACTTCAAAG
TCTACATATTCAATGTGACCAATTCGGATAGGATTCAACAAGGTGCCATA
CCAATAGTCGAGGAAATAGGACCCTATGTATACAAACAATTCCGCCAGAA
GAAAGTGAAGCACTTTTCGAGAGATGGATCGAAAATTTCCTATGTGCAAA
ATGTGCATTTCGATTTCGATGCTGTTGCCTCAGCTCCATATACCCAAGAT
GATCGAATTGTGGCTCTCAATATGCACATGAATGCATTTTTACAAGTATT
CGAAAGGGAAATCACAGATATCTTTCAGGGATTTGCCAATAGGCTTAACT
CTCGATTGAATCAAACGCCAGGCGTACGAGTCCTGAAACGATTGATGGAA
CGTATTCGAGGGAAACGTAAATCTGTGCTGCAGATCTCTGAGAATGATCC
TGGACTGGCTTTATTGCTAGTCCACTTGAATGCGAATCTGAAGGCTGTCT
TCAACGATCCAAGATCGATGTTTGTGAGCACTTCTGTAAGGGAATATCTT
TTCGATGGAGTACGATTCTGTATCAATCCGCAAGGAATCGCCAAGGCAAT
TTGTAACCAGATCAAGGAAAGTGGATCGAAAACAATCAGGGAGAAGAGCG
ATGGCAGCTTGGCATTCTCATTCTTCGGTCATAAAAATGGTTCTGGTCAC
GAAGTATACGAGGTGCATACTGGAAAAGGTGATCCTATGAGGGTATTGGA
GATTCAAAAACTGGATGATTCGCACAACCTGCAGGTGTGGCTGAATGCCA
GTTCAGAGGGCGAAACTTCGGTTTGTAATCAAATCAATGGCACTGATGCA
TCCGCATATCCGCCATTTCGCCAACGAGGGGATTCGATGTACATTTTTAG
CGCAGATATTTGCAGATCGGTGCAGTTATTCTACCAAACCGATATACAGT
ACCAGGGTATACCTGGATATAGATACTCTATTGGCGAGAACTTTATCAAC
GACATTGGTCCGGAACATGATAACGAGTGCTTCTGTGTTGACAAATTGGC
GAATGTGATCAAGAGGAAAAACGGATGTCTATATGCAGGGGCCTTGGATT
TGACCACCTGTTTGGATGCCCCTGTGATTTTGACATTGCCGCACATGCTG
GGCGCCTCGAATGAGTACCGCAAAATGATAAGAGGCTTAAAACCAGATGC
CAAAAAGCATCAGACTTTTGTGGATGTGCAGTCGCTGACTGGCACGCCTT
TGCAAGGCGGCAAAAGGGTACAGTTCAATATGTTCCTCAAGAGCATAAAT
CGAATCGGCATCACGGAAAATTTGCCCACAGTTTTGATGCCCGCCATTTG
GGTGGAGGAGGGCATTCAACTCAATGGTGAAATGGTGGCCTTTTTCAAAA
AGAAACTGATCAACACATTGAAAACCCTCAACATCGTTCACTGGGCGACC
TTGTGTGGGGGCATTGGGGTTGCGGTTGCGTGCCTGATATACTATATCTA
TCAAAGGGGGCGTGTCGTGGAGCCGCCCGTGAAGGCAAGCTTTCTAGACC
AT
BO33103.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:12:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Snmp2-RD | 1671 | CG7422-PD | 1..1668 | 17..1684 | 8340 | 100 | Plus |
| Snmp2-RC | 1671 | CG7422-PC | 1..1668 | 17..1684 | 8340 | 100 | Plus |
| Snmp2-RB | 1533 | CG7422-PB | 418..1530 | 572..1684 | 5565 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:12:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Snmp2-RD | 2837 | CG7422-RD | 964..2631 | 17..1684 | 8340 | 100 | Plus |
| Snmp2-RC | 2481 | CG7422-RC | 608..2275 | 17..1684 | 8340 | 100 | Plus |
| Snmp2-RB | 2343 | CG7422-RB | 1025..2137 | 572..1684 | 5565 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:12:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7736109..7736541 | 1265..833 | 2165 | 100 | Minus |
| 3L | 28110227 | 3L | 7736609..7736869 | 832..572 | 1305 | 100 | Minus |
| 3L | 28110227 | 3L | 7733456..7733631 | 1684..1509 | 880 | 100 | Minus |
| 3L | 28110227 | 3L | 7738539..7738700 | 285..124 | 810 | 100 | Minus |
| 3L | 28110227 | 3L | 7738334..7738482 | 434..286 | 745 | 100 | Minus |
| 3L | 28110227 | 3L | 7738107..7738244 | 571..434 | 690 | 100 | Minus |
| 3L | 28110227 | 3L | 7733690..7733817 | 1511..1384 | 640 | 100 | Minus |
| 3L | 28110227 | 3L | 7733882..7734001 | 1384..1265 | 600 | 100 | Minus |
| 3L | 28110227 | 3L | 7741968..7742078 | 127..17 | 555 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 13:12:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmir\worf | 4174 | Dmir\worf WORF 4174bp Derived from AY144572. | 1120..1175 | 797..740 | 114 | 69 | Minus |
| 412 | 7567 | 412 412 7567bp | 1425..1477 | 366..314 | 112 | 67.9 | Minus |
BO33103.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-18 16:29:46 Download gff for
BO33103.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7422-RC | 608..2275 | 17..1686 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:52:18 Download gff for
BO33103.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snmp2-RC | 608..2275 | 17..1686 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:23:27 Download gff for
BO33103.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snmp2-RC | 608..2275 | 17..1686 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:23:27 Download gff for
BO33103.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7736609..7736869 | 572..832 | 100 | <- | Minus |
| 3L | 7738107..7738244 | 434..571 | 100 | <- | Minus |
| 3L | 7738335..7738482 | 286..433 | 100 | <- | Minus |
| 3L | 7738539..7738696 | 128..285 | 100 | <- | Minus |
| 3L | 7741968..7742078 | 17..127 | 100 | | Minus |
| 3L | 7733454..7733629 | 1511..1686 | 98 | <- | Minus |
| 3L | 7733691..7733816 | 1385..1510 | 100 | <- | Minus |
| 3L | 7733882..7734000 | 1266..1384 | 100 | <- | Minus |
| 3L | 7736109..7736541 | 833..1265 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:52:18 Download gff for
BO33103.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7731207..7731344 | 434..571 | 100 | <- | Minus |
| arm_3L | 7726554..7726729 | 1511..1686 | 98 | <- | Minus |
| arm_3L | 7726791..7726916 | 1385..1510 | 100 | <- | Minus |
| arm_3L | 7726982..7727100 | 1266..1384 | 100 | <- | Minus |
| arm_3L | 7729209..7729641 | 833..1265 | 100 | <- | Minus |
| arm_3L | 7729709..7729969 | 572..832 | 100 | <- | Minus |
| arm_3L | 7731435..7731582 | 286..433 | 100 | <- | Minus |
| arm_3L | 7731639..7731796 | 128..285 | 100 | <- | Minus |
| arm_3L | 7735068..7735178 | 17..127 | 100 | | Minus |
BO33103.pep Sequence
Translation from 16 to 1702
> BO33103.pep
MIHWSLIVSALGVCVAVLGGYCGWILFPNMVHKKVEQSVVIQDGSEQFKR
FVNLPQPLNFKVYIFNVTNSDRIQQGAIPIVEEIGPYVYKQFRQKKVKHF
SRDGSKISYVQNVHFDFDAVASAPYTQDDRIVALNMHMNAFLQVFEREIT
DIFQGFANRLNSRLNQTPGVRVLKRLMERIRGKRKSVLQISENDPGLALL
LVHLNANLKAVFNDPRSMFVSTSVREYLFDGVRFCINPQGIAKAICNQIK
ESGSKTIREKSDGSLAFSFFGHKNGSGHEVYEVHTGKGDPMRVLEIQKLD
DSHNLQVWLNASSEGETSVCNQINGTDASAYPPFRQRGDSMYIFSADICR
SVQLFYQTDIQYQGIPGYRYSIGENFINDIGPEHDNECFCVDKLANVIKR
KNGCLYAGALDLTTCLDAPVILTLPHMLGASNEYRKMIRGLKPDAKKHQT
FVDVQSLTGTPLQGGKRVQFNMFLKSINRIGITENLPTVLMPAIWVEEGI
QLNGEMVAFFKKKLINTLKTLNIVHWATLCGGIGVAVACLIYYIYQRGRV
VEPPVKASFLDH
BO33103.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:36:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Snmp2-PD | 556 | CG7422-PD | 1..556 | 1..556 | 2917 | 100 | Plus |
| Snmp2-PC | 556 | CG7422-PC | 1..556 | 1..556 | 2917 | 100 | Plus |
| Snmp2-PB | 510 | CG7422-PB | 1..510 | 1..556 | 2631 | 91.7 | Plus |
| Snmp1-PB | 551 | CG7000-PB | 23..481 | 23..543 | 541 | 25.8 | Plus |
| Snmp1-PA | 551 | CG7000-PA | 23..481 | 23..543 | 541 | 25.8 | Plus |
