BO33105.complete Sequence
2134 bp assembled on 2012-09-18
GenBank Submission: KX794311
> BO33105.complete
GAAGTTATCAGTCGACATGAGTTTTTCCAGCGACGAGGTGAACTTTCTGG
TTTACCGATACCTGCAGGAGTCGGGCTTTCTGCACTCGGCCTACGTGTTT
GGCATTGAGTCACACATCTCGCAAAGTAATATCAATGGCGCATTGGTTCC
ACCTGCCGCTTTGCTCACCATCCTGCAGAAGGGTCTTCTGTACACTGAAG
TGGAGTGGAGCGTAGGCGAAGACGGCGAGGTGGCGCGACCCATTGAAGGA
CTCTCTCTAATAGACGCTGTCATGCCGGAGGTGAAGCCACTCAAGCCCAT
TGTGAAAACAGAGCCGGGAAAACCCGGGGCAGTCGACTCTTCTGCCCCTG
CCGGTGGCAACCAGAACAACAATGCCAAGCCTGAGATAAAAATAGAACCG
GGTACCGGAGTGGCGGGCTCAGCAGGTGGAAACAAAATTGCTGGCAGCAC
CACGGGCACAAGCACACCAACCGATCAGTCGGCAAGCGAGGTAGACTCCA
GTGGAAATGCGGCAAATAATGCTGGCGGCACATACGCCGGAAACAATGGA
GCTGGAGGGAACCAGGCCAGTACTGGAGGATCTAATAGCACAAGCACACC
AGCTGGTGGAGATTTGGCAGCACCTGGGGCAAGTCAAAAGAAATCCCAGA
ACTCGAATGAAGCGGGAAGCTCATCTAGTGGCAATGCAGGCAATGCAAAT
GCTACCAGTACCGATGATGCAGCCTCCTCAACATCCACAAATGGCAATAG
CAGCACTTCCAGCAGCGTAGAACAACCTACAAGCGGGCTGACGCCCGCTG
GTGGAACTGTATCAACCTCCAATCCGGACGCAGCAGCATCGGGCGGAGCT
TCGACTGCAACAGGATCAAAGGCGCCAAGTGGAGCGGTTACGATTCGCGT
AGGAGCCCAAGGAAACAACGTGCAGTCTGGTTCGTCCAATGCTCAAAGCT
CTGCTCCCAGTGGAACCATCTCCTCGTCTACCAGCGGAGGTGCTGGGACT
CCCGCAGCTCTTGTTCCCATGGACATTGACGAGAACATCGAAATACCCGA
ATCCAAGGCTCGTGTATTACGCGGCCACGAAAGCGAGGTGTTTATCTGCG
CATGGAATCCTAGCCGGGATTTACTGGCAAGCGGTTCGGGAGACAGCACT
GCTAGGATATGGGACATGTCCGATGCAAACACTAACTCCAACCAGTTGGT
GCTGCGCCACTGCATCCAGAAAGGCGGCGCTGAGGTGCCTAGCAACAAGG
ACGTCACCTCTCTGGACTGGAATTGCGATGGTTCCTTGCTCGCCACCGGC
AGCTACGATGGTTACGCCCGAATTTGGAAAACCGACGGTCGACTTGCTTC
TACTTTGGGACAACACAAGGGTCCGATCTTTGCTCTGAAGTGGAACAAGT
GCGGCAACTACATCCTCTCGGCTGGCGTGGACAAGACGACGATCATCTGG
GACGCATCCACGGGCCAATGCACCCAGCAATTTGCCTTTCACAGTGCTCC
AGCCTTGGATGTGGACTGGCAGACAAACCAGGCCTTTGCCTCTTGCAGTA
CGGATCAGCGGATACATGTGTGCCGGTTGGGTGTAAATGAACCCATCAAG
ACCTTTAAAGGACACACAAACGAGGTGAATGCAATCAAGTGGTGTCCGCA
GGGCCAACTGCTGGCGTCCTGCTCTGATGACATGACCCTCAAGATCTGGA
GCATGAACCGAGATCGTTGCTGCCACGATCTGCAGGCTCACTCAAAGGAG
ATCTATACGATAAAATGGTCGCCCACGGGGCCGGGAACCAATAATCCAAA
CACAAACCTGATCCTCGCATCCGCTTCGTTCGATTCCACGGTAAGACTGT
GGGACGTGGAGAGGGGCAGCTGTATCCACACGCTCACCAAGCACACAGAG
CCAGTCTATTCGGTGGCCTTCAGTCCGGATGGAAAGCATTTGGCCTCCGG
CAGCTTCGACAAGTGCGTACACATTTGGAGCACGCAAACGGGACAGCTAG
TGCACAGTTACAAGGGCACGGGCGGAATCTTTGAGGTGTGCTGGAACTCC
AAGGGCACTAAGGTGGGTGCCAGTGCCTCCGACGGTAGCGTTTTCGTGTT
GGACCTGCGAAAGTTCGCAAGCTTTCTAGACCAT
BO33105.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:12:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ebi-RA | 2103 | CG4063-PA | 1..2100 | 17..2116 | 10500 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:12:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ebi-RA | 3327 | CG4063-RA | 322..2422 | 16..2116 | 10505 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:12:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 415511..416710 | 74..1273 | 6000 | 100 | Plus |
| 2L | 23513712 | 2L | 416789..417631 | 1274..2116 | 4215 | 100 | Plus |
| 2L | 23513712 | 2L | 415388..415447 | 16..75 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 13:12:51 has no hits.
BO33105.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-18 16:29:47 Download gff for
BO33105.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ebi-RA | 321..2420 | 17..2118 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:52:19 Download gff for
BO33105.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ebi-RA | 323..2422 | 17..2118 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:23:28 Download gff for
BO33105.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ebi-RA | 323..2422 | 17..2118 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:23:28 Download gff for
BO33105.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 415389..415446 | 17..74 | 100 | -> | Plus |
| 2L | 415512..416710 | 75..1273 | 100 | -> | Plus |
| 2L | 416789..417631 | 1274..2118 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:52:19 Download gff for
BO33105.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 415389..415446 | 17..74 | 100 | -> | Plus |
| arm_2L | 415512..416710 | 75..1273 | 100 | -> | Plus |
| arm_2L | 416789..417631 | 1274..2118 | 99 | | Plus |
BO33105.pep Sequence
Translation from 16 to 2134
> BO33105.pep
MSFSSDEVNFLVYRYLQESGFLHSAYVFGIESHISQSNINGALVPPAALL
TILQKGLLYTEVEWSVGEDGEVARPIEGLSLIDAVMPEVKPLKPIVKTEP
GKPGAVDSSAPAGGNQNNNAKPEIKIEPGTGVAGSAGGNKIAGSTTGTST
PTDQSASEVDSSGNAANNAGGTYAGNNGAGGNQASTGGSNSTSTPAGGDL
AAPGASQKKSQNSNEAGSSSSGNAGNANATSTDDAASSTSTNGNSSTSSS
VEQPTSGLTPAGGTVSTSNPDAAASGGASTATGSKAPSGAVTIRVGAQGN
NVQSGSSNAQSSAPSGTISSSTSGGAGTPAALVPMDIDENIEIPESKARV
LRGHESEVFICAWNPSRDLLASGSGDSTARIWDMSDANTNSNQLVLRHCI
QKGGAEVPSNKDVTSLDWNCDGSLLATGSYDGYARIWKTDGRLASTLGQH
KGPIFALKWNKCGNYILSAGVDKTTIIWDASTGQCTQQFAFHSAPALDVD
WQTNQAFASCSTDQRIHVCRLGVNEPIKTFKGHTNEVNAIKWCPQGQLLA
SCSDDMTLKIWSMNRDRCCHDLQAHSKEIYTIKWSPTGPGTNNPNTNLIL
ASASFDSTVRLWDVERGSCIHTLTKHTEPVYSVAFSPDGKHLASGSFDKC
VHIWSTQTGQLVHSYKGTGGIFEVCWNSKGTKVGASASDGSVFVLDLRKF
ASFLDH
BO33105.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:36:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ebi-PA | 700 | CG4063-PA | 1..700 | 1..700 | 3671 | 100 | Plus |
| Nle-PA | 488 | CG2863-PA | 117..480 | 353..689 | 358 | 28.4 | Plus |
| Nle-PA | 488 | CG2863-PA | 191..487 | 342..655 | 308 | 28 | Plus |
| wds-PB | 361 | CG17437-PB | 59..316 | 438..698 | 306 | 27.7 | Plus |
| wds-PA | 361 | CG17437-PA | 59..316 | 438..698 | 306 | 27.7 | Plus |
| Gbeta5-PA | 358 | CG10763-PA | 64..358 | 349..655 | 294 | 25.6 | Plus |
| wds-PB | 361 | CG17437-PB | 27..361 | 304..658 | 292 | 25.1 | Plus |
| wds-PA | 361 | CG17437-PA | 27..361 | 304..658 | 292 | 25.1 | Plus |
| wds-PB | 361 | CG17437-PB | 73..326 | 411..667 | 284 | 27 | Plus |
| wds-PA | 361 | CG17437-PA | 73..326 | 411..667 | 284 | 27 | Plus |
| wds-PB | 361 | CG17437-PB | 27..357 | 220..561 | 273 | 26.2 | Plus |
| wds-PA | 361 | CG17437-PA | 27..357 | 220..561 | 273 | 26.2 | Plus |
