BO33106.complete Sequence
2338 bp assembled on 2012-09-18
GenBank Submission: KX794451
> BO33106.complete
GAAGTTATCAGTCGACATGTCACAATTCCGCGATAATTCATGGCTCGCCA
ATGCGCGATCATACGGCGTTTTGAAGAGTTTGAGAAGCTCGGCACGTTAT
GCCAAGGCCAAATCCAAGTCGGCCATTAATCTCAATGCCCATCTGAAGAA
GCAGCAGAAGCTGGAGGAAGGACATCCCGAAAAGAAGAGGCAGGATAAGA
AAATACTCAGACAGAGTGTCAGTGAGGATCAGCCGATCTATGCGAATGTG
GACGAGGTTATACCGATCCATTTAGAACCGGAAACCGGAACCGAAGTCGA
TGCTCTAATGGGTAATGCACAGGGACAGAACGGCTTCGAGGAACTCCGGC
GATATGTGAAGCAGGGCGGTGATTTTAGCAAGGAGCTCATCTTTGTCCTG
CAGGAGAGAGCCGATTCGGAGCTGATCTACTCCAAGTCGCTATCGAAACT
GGCCAACAAGCTGAACAAAGCGGGCAGGGAAATTCCCGGGAGCGTGGCCG
ACGCCTGGCGTGGAGTGGCTACGGAGATGGAGAGCCGCAGCGACATCCAT
CGCCAGTTGGCAGCCTCGCTAACGGATGAGCTGGTCAAGCCGCTCAAGAT
CGTCGTCGAAGGACATCACAAGGCGCGCAAGGCGGTGGAAAGCAACGTGG
ACAAGGCGGCGCGAGTACTGGGCGAATGGCGAGCCAGCGAGGCGAAAGCC
AAGAAGGCCTCCCATACGGCGGCGCGCGAGAACGAGAAGCTGCAGGACGC
AATGCTGGACGTGCGCATCCAGAAGTCACCATCGATTGCCCTGCTCCACC
AGGGACCCAACAAGCAGGCCGCAGAAAAGGAGCTCAAGTCAGCGGAGAAG
GATTGCGTCAAGCTGGATAACAAGCGCAAGAAGGCCGAGGAGGCGGTGAA
GCGTGCGGATGTGGAATACTACACCCTGTGCGTGCGTTCGGAGCGAGCAC
GCGTAGACTGGGAGATGGCCGTGCTCCGGGGAAGTGCCCAACTGCAGAGC
AGCGAACAGCAGCGGCTGGGCAATATGCACAACTTTGCCCAGCAGTATGC
ACGCCTCATCTCGGACATGAATCCGATACTCGGTGGCCTGAGCACACGCC
TGCAGCCGCAACTCGATGCTTGCAATGTGGCTAAGGATATGCAAGTGGTG
CGCCACATCCGCCGCAATTCGGAGGGACCCAGTGAGCAACTCCTACCGGA
CTTTTACTGCGAACACACCACGCTGGCCATGAATCGGGAGCGTCGCAAGC
ACGCTCTGATCAAGCTGCTGCAGCTGGTCAAGACGGATCTGGAGCGGGAG
CGACGATCCCGCGACGGATTGAGGGGACTGTCGCAATCGCTTAACCATCA
GGAGCATCAGAACATCACCGATAAGCTGTACCACATTCGTTCCATGCTGA
CCTATTTGGAGGGCGCCCGTCTCAAGCTGCACTCTGCCCTCTTGGAGCTG
GACCACAAGCCCAGAGCCACTCACCCACTGGCCCAGCACATTCATATCAC
CCGTGACCGCACTGGTTTGCAGCAGAGCATCCTGAAGGTGCCCAACTGGC
TGAAGAACAACGACAAGTCGCAGACGCAGCAATCGACCAGTATGCTGGCC
CACGACATCACCGACATAACCACTAACCACGAGGATGAGCTTCCCGACGA
GAACTGCTCCCACCTGCACAGCAGTAGCCATAGCAACAATAATAGCAACG
GCTCCTGCACAGATGTCAGTTCGGTGGTGAAGCCTTTTAACCGAAGCAAA
AGCAACATCGAGACCAATTTCACCAGTCAACCAAAGATAATCTCGACGAC
AAATGCCGCGATTGCCGTGTCCGTTAAGTCCAAAACCCTGGCCAATCTGC
AGGATGGCCATCACAATAACCAACAGCACCATCATCATCATCATAATCAT
CACAGCGATCGCGGCCAGGCGGATGGTGGATCCAATCAGCAGGACTCTGA
TTTCGATGAGTTCAGCTCGCAGGACGAGGACGACGAGCCGCAGCAGCCGC
AGCAACAACCGCAGCCGTTGCAATCGCAGCAGCAGCAACAGCAGCCGTTG
CTGCAAAATCCAACCATCAATGGCCAAGTGCAGACGCAGCATTTCTATCA
GAATGCGCAGGAACTGCAGAAGGGCCAAAAGAACGGATCCGTTCCGATAC
TGGGACGCTGCAAGGCACTGTATAGCTACACCCCGAAGCTCTACGACGAG
CTGGAACTGAGTCCCGGCGACATCATCGAGGTGCATGCCAAACAGGACGA
CGGCTGGTGGCTGGGCGCCCTGCGCAATCACATCGGCATCTTTCCGGCCA
CCTATGTGGAGGAGTGCGCCGCAAGCTTTCTAGACCAT
BO33106.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:13:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42388-RC | 2307 | CG42388-PC | 1..2304 | 17..2320 | 11520 | 100 | Plus |
| CG42388-RF | 2016 | CG42388-PF | 1..2013 | 308..2320 | 10065 | 100 | Plus |
| CG42388-RG | 3678 | CG42388-PG | 1676..3675 | 321..2320 | 10000 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:13:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42388-RC | 3014 | CG42388-RC | 666..2969 | 17..2320 | 11520 | 100 | Plus |
| CG42388-RF | 2508 | CG42388-RF | 187..2463 | 44..2320 | 11385 | 100 | Plus |
| CG42388-RG | 5133 | CG42388-RG | 1833..3832 | 321..2320 | 10000 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:13:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9052450..9053274 | 1496..2320 | 4125 | 100 | Plus |
| X | 23542271 | X | 9051467..9052217 | 634..1384 | 3755 | 100 | Plus |
| X | 23542271 | X | 9040037..9040317 | 43..323 | 1405 | 100 | Plus |
| X | 23542271 | X | 9051183..9051412 | 407..636 | 1150 | 100 | Plus |
| X | 23542271 | X | 9052278..9052388 | 1385..1495 | 555 | 100 | Plus |
| X | 23542271 | X | 9051033..9051122 | 319..408 | 450 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 13:13:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 17.6 | 7439 | 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). | 2631..2708 | 1729..1804 | 115 | 62.8 | Plus |
BO33106.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-18 16:29:48 Download gff for
BO33106.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42388-RC | 666..2969 | 17..2322 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:52:21 Download gff for
BO33106.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42388-RC | 666..2969 | 17..2322 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:23:39 Download gff for
BO33106.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42388-RC | 666..2969 | 17..2322 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:23:39 Download gff for
BO33106.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9030870..9030896 | 17..43 | 100 | -> | Plus |
| X | 9040038..9040316 | 44..322 | 100 | -> | Plus |
| X | 9051037..9051122 | 323..408 | 100 | -> | Plus |
| X | 9051185..9051410 | 409..634 | 100 | -> | Plus |
| X | 9051468..9052217 | 635..1384 | 100 | -> | Plus |
| X | 9052278..9052388 | 1385..1495 | 100 | -> | Plus |
| X | 9052450..9053274 | 1496..2322 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:52:21 Download gff for
BO33106.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8924903..8924929 | 17..43 | 100 | -> | Plus |
| arm_X | 8934071..8934349 | 44..322 | 100 | -> | Plus |
| arm_X | 8945070..8945155 | 323..408 | 100 | -> | Plus |
| arm_X | 8945218..8945443 | 409..634 | 100 | -> | Plus |
| arm_X | 8945501..8946250 | 635..1384 | 100 | -> | Plus |
| arm_X | 8946311..8946421 | 1385..1495 | 100 | -> | Plus |
| arm_X | 8946483..8947307 | 1496..2322 | 99 | | Plus |
BO33106.pep Sequence
Translation from 16 to 2338
> BO33106.pep
MSQFRDNSWLANARSYGVLKSLRSSARYAKAKSKSAINLNAHLKKQQKLE
EGHPEKKRQDKKILRQSVSEDQPIYANVDEVIPIHLEPETGTEVDALMGN
AQGQNGFEELRRYVKQGGDFSKELIFVLQERADSELIYSKSLSKLANKLN
KAGREIPGSVADAWRGVATEMESRSDIHRQLAASLTDELVKPLKIVVEGH
HKARKAVESNVDKAARVLGEWRASEAKAKKASHTAARENEKLQDAMLDVR
IQKSPSIALLHQGPNKQAAEKELKSAEKDCVKLDNKRKKAEEAVKRADVE
YYTLCVRSERARVDWEMAVLRGSAQLQSSEQQRLGNMHNFAQQYARLISD
MNPILGGLSTRLQPQLDACNVAKDMQVVRHIRRNSEGPSEQLLPDFYCEH
TTLAMNRERRKHALIKLLQLVKTDLERERRSRDGLRGLSQSLNHQEHQNI
TDKLYHIRSMLTYLEGARLKLHSALLELDHKPRATHPLAQHIHITRDRTG
LQQSILKVPNWLKNNDKSQTQQSTSMLAHDITDITTNHEDELPDENCSHL
HSSSHSNNNSNGSCTDVSSVVKPFNRSKSNIETNFTSQPKIISTTNAAIA
VSVKSKTLANLQDGHHNNQQHHHHHHNHHSDRGQADGGSNQQDSDFDEFS
SQDEDDEPQQPQQQPQPLQSQQQQQQPLLQNPTINGQVQTQHFYQNAQEL
QKGQKNGSVPILGRCKALYSYTPKLYDELELSPGDIIEVHAKQDDGWWLG
ALRNHIGIFPATYVEECAASFLDH
BO33106.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:37:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42388-PC | 768 | CG42388-PC | 1..768 | 1..768 | 3982 | 100 | Plus |
| CG42388-PF | 671 | CG42388-PF | 1..671 | 98..768 | 3492 | 100 | Plus |
| CG42388-PG | 1225 | CG42388-PG | 496..1225 | 31..768 | 3479 | 92 | Plus |
| CG42388-PE | 1225 | CG42388-PE | 496..1225 | 31..768 | 3479 | 92 | Plus |
| CG42388-PH | 1330 | CG42388-PH | 601..1330 | 31..768 | 3479 | 92 | Plus |
