BO33108.complete Sequence
2770 bp assembled on 2013-04-18
GenBank Submission: KX798923
> BO33108.complete
GAAGTTATCAGTCGACATGTGGCGGGCTCAGCCAAGTCTCTGGATCTGGT
GGATCTTCTTAATCCTTGTTCCTTCCATCAGAGCTGTCTACGAGGATTAT
CGTTTGCCCAGATCTGTGGAGCCTTTGCACTACAACCTGCGAATTCTCAC
ACACCTAAATAGCACCGATCAAAGATTCGAGGGATCTGTGACAATAGATC
TTCTGGCACGGGAGACCACCAAGAACATCACCTTGCATGCGGCGTACTTA
AAGATAGATGAGAACCGAACATCAGTTGTTTCTGGCCAGGAAAAGTTTGG
AGTTAATCGAATCGAAGTGAATGAGGTGCACAACTTCTACATCCTGCACT
TGGGTCGGGAATTGGTAAAGGATCAGATCTACAAGTTGGAAATGCACTTC
AAAGCCGGGCTAAATGATTCCCAAAGTGGGTACTATAAAAGTAACTACAC
GGATATAGTTACCAAGGAAGTTCATCACCTGGCGGTCACTCAGTTCTCAC
CCACATTTGCCAGGCAGGCATTTCCCTGCTTCGATGAACCATCCTGGAAG
GCGACCTTTAACATAACCCTTGGCTATCATAAAAAATACATGGGATTGAG
TGGCATGCCTGTTCTCAGGTGTCAGGATCATGATAGTCTTACAAATTATG
TATGGTGCGATCACGACACTCTTCTAAGGACCTCAACCTATTTGGTGGCC
TTTGCTGTCCATGATCTGGAAAATGCCGCCACCGAGGAGAGTAAGACCAG
CAATAGAGTTATCTTTCGCAACTGGATGCAGCCGAAGTTGTTGGGTCAGG
AAATGATATCCATGGAAATTGCACCAAAGCTGCTCTCCTTCTATGAGAAT
TTATTCCAAATTAACTTTCCGCTGGCGAAAGTGGACCAACTGACGGTGCC
CACTCACAGATTTACGGCCATGGAGAACTGGGGTCTGGTCACCTACAACG
AGGAAAGATTGCCTCAAAATCAAGGCGATTATCCGCAGAAACAGAAGGAT
AGTACTGCCTTCACGGTGGCTCACGAATATGCCCATCAGTGGTTCGGAAA
TTTGGTCACCATGAATTGGTGGAATGATCTCTGGTTGAAGGAAGGTCCAT
CTACCTACTTCGGCTACCTGGCCCTCGATTCTTTGCAGCCCGAATGGAGA
AGAGGAGAGCGCTTTATATCAAGGGATTTGGCGAACTTCTTTAGCAAAGA
CTCGAACGCAACTGTGCCGGCCATCTCCAAGGATGTTAAGAATCCCGCCG
AGGTGCTCGGACAGTTCACGGAGTATGTGTACGAGAAGGGATCGCTGACC
ATCCGCATGCTGCACAAACTTGTCGGAGAGGAAGCCTTCTTCCACGGAAT
TCGATCTTTTTTGGAACGCTTTTCTTTTGGTAATGTGGCCCAAGCTGATC
TTTGGAATTCCCTGCAAATGGCTGCTTTGAAAAACCAGGTTATTTCGTCC
GACTTTAACCTAAGTAGGGCCATGGATTCTTGGACCCTACAGGGTGGTTA
TCCCTTGGTAACCCTTATACGGAACTACAAAACTGGCGAGGTAACACTCA
ATCAGAGCAGATTCTTCCAGGAGCATGGAATTGAAAAGGCTTCATCCTGC
TGGTGGGTTCCTTTAAGGTTCGTTAGGCAAAATCTACCGGACTTTAATCA
AACTACCCCACAGTTTTGGTTGGAATGTCCCTTGAACACTAAAGTACTGA
AGTTGCCCGATCATCTATCCACTGACGAGTGGGTCATACTGAATCCCCAA
GTAGCAACCATCTTCAGAGTTAACTATGATGAGCACAACTGGCGCTTGAT
AATCGAGAGTCTGAGGAATGATCCCAATTCTGGTGGCATCCACAAACTAA
ATAAAGCTCAGTTGCTGGATGATCTCATGGCTTTGGCTGCAGTCCGGCTA
CACAAATATGACAAAGCATTCGATTTGCTGGAATATCTGAAGAAAGAGCA
GGACTTTTTGCCTTGGCAGAGGGCCATTGGTATCCTCAATCGACTGGGAG
CCCTACTGAATGTCGCGGAGGCAAACAAATTTAAGAACTACATGCAGAAG
CTACTTTTGCCATTGTATAACCGCTTTCCAAAGCTATCAGGAATAAGGGA
AGCTAAGCCCGCCATCAAGGACATTCCATTTGCACACTTTGCATATTCAC
AGGCCTGTCGTTACCATGTGGCTGATTGCACGGATCAGGCCAAGATTCTC
GCTATAACCCATAGAACTGAAGGTCAGCTGGAGCTGCCCTCCGATTTCCA
GAAGGTTGCTTACTGCTCGCTACTGGATGAAGGTGGCGATGCAGAGTTCC
TGGAAGTATTCGGACTGTTCCAGAACTCCACCAATGGATCGCAGAGAAGG
ATATTGGCATCTGCGCTCGGTTGTGTTCGTAACTTTGGGAACTTCGAACA
GTTTCTGAACTACACACTTGAATCCGACGAGAAACTGCTCGGTGATTGCT
ATATGTTAGCAGTGAAATCCGCACTAAATAGGGAACCTTTGGTTTCTCCC
ACAGCAAACTATATTATAAGCCATGCCAAGAAACTCGGTGAAAAATTCAA
GAAGAAAGAGCTCACGGGACTTTTGCTTAGTTTGGCTCAAAATCTTCGAA
GTACGGAGGAAATTGATCGACTTAAAGCGCAGTTAGAAGACCTCAAGGAG
TTTGAAGAACCTCTGAAGAAAGCCCTCTATCAGGGCAAAATGAACCAGAA
ATGGCAGAAAGATTGCTCCAGCGATTTTATCGAGGCTATAGAGAAACACT
TAGCAAGCTTTCTAGACCAT
BO33108.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:17:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3502-RB | 2739 | CG3502-PB | 1..2736 | 17..2752 | 13680 | 100 | Plus |
sda-RD | 3585 | CG5518-PD | 1834..1898 | 1031..1095 | 190 | 86.2 | Plus |
sda-RC | 3252 | CG5518-PC | 1501..1565 | 1031..1095 | 190 | 86.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:17:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3502-RB | 3171 | CG3502-RB | 353..3090 | 15..2752 | 13690 | 100 | Plus |
sda-RD | 5182 | CG5518-RD | 2645..2709 | 1031..1095 | 190 | 86.2 | Plus |
sda-RC | 4849 | CG5518-RC | 2312..2376 | 1031..1095 | 190 | 86.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:17:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23344317..23345721 | 2035..631 | 7025 | 100 | Minus |
2R | 25286936 | 2R | 23343759..23344263 | 2538..2034 | 2525 | 100 | Minus |
2R | 25286936 | 2R | 23346004..23346463 | 474..15 | 2300 | 100 | Minus |
2R | 25286936 | 2R | 23343486..23343700 | 2752..2538 | 1075 | 100 | Minus |
2R | 25286936 | 2R | 23345791..23345946 | 630..475 | 780 | 100 | Minus |
3R | 32079331 | 3R | 26942455..26942519 | 1031..1095 | 190 | 86.2 | Plus |
Blast to na_te.dros performed 2014-11-28 13:17:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dbif\P-element_M | 2935 | Dbif\P-element_M P_M 2935bp Derived from X60990. | 1682..1733 | 1410..1359 | 116 | 69.2 | Minus |
BO33108.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-04-19 15:01:13 Download gff for
BO33108.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3502-RB | 351..3086 | 17..2754 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:02:23 Download gff for
BO33108.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3502-RB | 355..3090 | 17..2754 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:25:14 Download gff for
BO33108.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3502-RB | 355..3090 | 17..2754 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:25:14 Download gff for
BO33108.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23343482..23343699 | 2539..2754 | 99 | <- | Minus |
2R | 23343759..23344261 | 2036..2538 | 100 | <- | Minus |
2R | 23344317..23345721 | 631..2035 | 100 | <- | Minus |
2R | 23345791..23345946 | 475..630 | 100 | <- | Minus |
2R | 23346004..23346461 | 17..474 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:02:23 Download gff for
BO33108.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19231005..19231222 | 2539..2754 | 99 | <- | Minus |
arm_2R | 19231282..19231784 | 2036..2538 | 100 | <- | Minus |
arm_2R | 19231840..19233244 | 631..2035 | 100 | <- | Minus |
arm_2R | 19233314..19233469 | 475..630 | 100 | <- | Minus |
arm_2R | 19233527..19233984 | 17..474 | 100 | | Minus |
BO33108.pep Sequence
Translation from 16 to 2770
> BO33108.pep
MWRAQPSLWIWWIFLILVPSIRAVYEDYRLPRSVEPLHYNLRILTHLNST
DQRFEGSVTIDLLARETTKNITLHAAYLKIDENRTSVVSGQEKFGVNRIE
VNEVHNFYILHLGRELVKDQIYKLEMHFKAGLNDSQSGYYKSNYTDIVTK
EVHHLAVTQFSPTFARQAFPCFDEPSWKATFNITLGYHKKYMGLSGMPVL
RCQDHDSLTNYVWCDHDTLLRTSTYLVAFAVHDLENAATEESKTSNRVIF
RNWMQPKLLGQEMISMEIAPKLLSFYENLFQINFPLAKVDQLTVPTHRFT
AMENWGLVTYNEERLPQNQGDYPQKQKDSTAFTVAHEYAHQWFGNLVTMN
WWNDLWLKEGPSTYFGYLALDSLQPEWRRGERFISRDLANFFSKDSNATV
PAISKDVKNPAEVLGQFTEYVYEKGSLTIRMLHKLVGEEAFFHGIRSFLE
RFSFGNVAQADLWNSLQMAALKNQVISSDFNLSRAMDSWTLQGGYPLVTL
IRNYKTGEVTLNQSRFFQEHGIEKASSCWWVPLRFVRQNLPDFNQTTPQF
WLECPLNTKVLKLPDHLSTDEWVILNPQVATIFRVNYDEHNWRLIIESLR
NDPNSGGIHKLNKAQLLDDLMALAAVRLHKYDKAFDLLEYLKKEQDFLPW
QRAIGILNRLGALLNVAEANKFKNYMQKLLLPLYNRFPKLSGIREAKPAI
KDIPFAHFAYSQACRYHVADCTDQAKILAITHRTEGQLELPSDFQKVAYC
SLLDEGGDAEFLEVFGLFQNSTNGSQRRILASALGCVRNFGNFEQFLNYT
LESDEKLLGDCYMLAVKSALNREPLVSPTANYIISHAKKLGEKFKKKELT
GLLLSLAQNLRSTEEIDRLKAQLEDLKEFEEPLKKALYQGKMNQKWQKDC
SSDFIEAIEKHLASFLDH
BO33108.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:08:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3502-PB | 912 | CG3502-PB | 1..912 | 1..912 | 4831 | 100 | Plus |
SP1029-PE | 932 | CG11956-PE | 24..918 | 20..898 | 1563 | 36.6 | Plus |
SP1029-PD | 932 | CG11956-PD | 24..918 | 20..898 | 1563 | 36.6 | Plus |
SP1029-PA | 932 | CG11956-PA | 24..918 | 20..898 | 1563 | 36.6 | Plus |
SP1029-PB | 932 | CG11956-PB | 24..918 | 20..898 | 1563 | 36.6 | Plus |