Clone BO33109 Report

Search the DGRC for BO33109

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:331
Well:9
Vector:pDNR-Dual
Associated Gene/TranscriptCG3338-RA
Protein status:BO33109.pep: Imported from assembly
Sequenced Size:2695

Clone Sequence Records

BO33109.complete Sequence

2695 bp assembled on 2012-10-15

GenBank Submission: KX799878

> BO33109.complete
GAAGTTATCAGTCGACATGAGCGAGTCTGCGGTAGCGGTGGAGCCGGAAG
AAAGGATGGTTGCTAACAACAAAATCCATTTCTCCAAGGAGGTGAAGCAG
GTCATCGACAAGGTTCTCAAAACGGACGATCCGATGGATGCGCCGGACTT
CAACACTGTGGACTACATCAACCAGCTCTTCCCCAACGAGCAATCGCTGG
CCGGTATTGATGAGACCATCCAAAAGATGCAGTGCGAGGTGTCCCTGATT
GATGACAACATCCGATCCGTGGTTCGTGGCCAAACGAACACCGGCCAGGA
TGGACAACTGGCACTGTGCGAGGCTCAAAAGGTTATCAGCTCCCTGTTCA
GCCACATCATCGACGTGAAGACCCGGGCGGAGCGCACCGAGGAAATGGTC
AAGGAGATAACCCGGGATATCAAGCAGCTGGACTGCGCCAAACGCAATCT
AACCGCTGCCATCACAACGCTGAATCACCTGCACATGCTGGTCGGTGGAA
TTGAAAGTCTGAACAAATTGATCGAGCGGCGATCCTATGGTGAAATCCTT
AATCCCCTCCAGGCGATTACCGAAGTTAACCAGCACTTCCAGCAGTTCTC
CGACATCGAGGAAATCAAGAATCTCTCACAAAGCGTAGATAAGATACAGG
TTACACTGGCCCAGCAAATCACAGAGGATTTCAAGGAGGCGTTTTCAGCA
AAGCCATCGTCACAGAACCAACACCGTTTGGGTCTTAACCAGTTGGCCGA
TGCTTGTAAAGTGATGTCCGTGCTGGATCCCAAAGTGAAGAAGGAGCTGC
TCAAGTGGTTTATTGCACAACAACTGGAGGAGTACACGCACTTGTTTCAC
GAGAATCAGGATATTGCCTGGCTGGACAAGATTGATAAGCGTTATGCCTG
GCTTAAGAGGCATCTGCTAGACTTCGAGGACAAGTATGGACCGGTGTTTC
CACTGGACTGGGAGGTCTCCGAGCGAATTACTGTGGAGTTTTGTCGACAG
ACACGCGAACAGCTGGCACAAATCATGGCCAAACGCACCAACGAAATCGA
TGTGAGACTACTTTTGTTCGCCATCAACAAGACGCAGGCTTTTGAACAGC
TGCTTTCCAAGCGATTCACGGGCGTTACACTGGGTGCACAGCCGACGGAT
AAAGCGAGAGTACTTGCTGAACCAACGACGACGGACGGTGCTGTGGGCTT
AACCGTTTTCCACGACCAAATCGGACAATGCTTTAAGCCGCACTTGGACA
TCTACATACGCAGCATCGACCGCAATCTTTCGGAGCTGATGGACAAGTTC
GTAGAGATGTCTCGGGAACCATACAAGTTCGCCGAGGCCAAGACCACCGT
GTACCCCAGCTCTGGTGATCTATTCGTCTTTTACAAGAAGTGCATGGTGC
AGTGCAACCAGCTAAGCAACGAACAACCAATGTACGATCTGGCTTTGGTG
TTTAAAAAATATCTACGGGAGTACGCCTCCAAAGTGCTCGAGGGCAGCAC
ACCCAAGCTTGTGCCAGCCACCACTAGCAGCTCGATCGGTAAAAGTGTTT
CGTTACTCACGCGCGATATGCAGAATCTATCAACGGCCGCTGGTCAGGTG
TTTCACAATTTCCTCAAAGAGGGCGATACGCAGCGATTTGCAAGAGATGA
TCTGGTGCGCATTTGTTGCGTTCTGACCACGGGTGAGTACTGTTTGGAGA
CGGTCCAACAGCTGGAGGATAAACTGAAGGAAAAGGTGACTTCTGCATAT
GTCAGCAAGATTGACATGAGCGAGGAAAAGGATGTCTTTCATAGAATCAT
TTCCAACTGCATCCAACTTTTGGTCCAAGATCTAGAGGCTGGCTGCGAAG
CTTCGCTGCAGGCGATGGCCAAGGTGCAGTGGCAACACATTAACAACGTG
GGCGACCAGAGCGCCTTCATCAGCAGCCTGTGCGGTAACTTTAAGCAGAC
AGTGCCTACCATCAGGGACACGCTAGCCAGTTCGCGGAAGTATTTCACCC
AGTTCTGCCATCGCTTCGTCGCCGCCTTCATACCGAAGTTCATCAATGTG
CTCTATCGCTGCAAACTAACCCTCTCGGATGGTTCCAACAATGTTCTGGG
CTGCGAGCAACTCTTGTTGGACACCCATTCGCTAAAGACGGCTTTATTAG
AGCTACCTTCCGTGGGATCGAGTGTGAACCGCAAGGCGCCCACCAGTTAC
ACCAAAGTTGTGGTCAAGGACATGACTCGGGCCGAGATGATCATCAAGGT
GGTGATGACGCCGGTACAGCCGCCGGCGCACTTCACTCAGCAAGTGCTTA
AGCTGCTGCCAGACATTACCATTGCGGAGTACCAAAAGATTCTGGATATG
AAGGCGGTCAAACGTGTGGATCAACTGCAACTGATTGATCTTTTCAAGCA
CACGGCATCTGCAGCGGCTGTGAGTGGCTTAATAGAGCCAACTACTGGAG
AGGAGGAGACCCAAGGTGCAGAAACAGTAGTCGCAACTTCGGGGACCACA
GACGATGCTGAAACCTCAGCAGTACCAACTGAAACAACAACGGCAACTTC
CTCAACCCCCAAACGAGCCTTTATCTTCAGCGTGGGCAGCTTTACGGGAA
GCGCAGATAAAAATGCCGATGGAAGTTCCCAGACGGGCATCAGAAAGCTG
GAAAACCTACTGAAAAAGCGCTTCCCCGCAAGCTTTCTAGACCAT

BO33109.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:37:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG3338-RA 2664 CG3338-PA 1..2661 17..2677 13305 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:37:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG3338-RA 2960 CG3338-RA 81..2745 13..2677 13310 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:37:12
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4384085..4385261 1794..618 5885 100 Minus
2L 23513712 2L 4383140..4384025 2677..1792 4430 100 Minus
2L 23513712 2L 4385316..4385825 619..110 2550 100 Minus
2L 23513712 2L 4385881..4385982 114..13 495 99 Minus
Blast to na_te.dros performed on 2014-11-28 12:37:13 has no hits.

BO33109.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-15 10:05:07 Download gff for BO33109.complete
Subject Subject Range Query Range Percent Splice Strand
CG3338-RA 85..2745 17..2679 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:55:50 Download gff for BO33109.complete
Subject Subject Range Query Range Percent Splice Strand
CG3338-RA 85..2745 17..2679 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:08:02 Download gff for BO33109.complete
Subject Subject Range Query Range Percent Splice Strand
CG3338-RA 85..2745 17..2679 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:08:02 Download gff for BO33109.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4383138..4384022 1795..2679 99 <- Minus
2L 4384085..4385259 620..1794 100 <- Minus
2L 4385316..4385822 113..619 100 <- Minus
2L 4385883..4385978 17..112 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:55:50 Download gff for BO33109.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4383138..4384022 1795..2679 99 <- Minus
arm_2L 4384085..4385259 620..1794 100 <- Minus
arm_2L 4385316..4385822 113..619 100 <- Minus
arm_2L 4385883..4385978 17..112 100   Minus

BO33109.pep Sequence

Translation from 16 to 2695

> BO33109.pep
MSESAVAVEPEERMVANNKIHFSKEVKQVIDKVLKTDDPMDAPDFNTVDY
INQLFPNEQSLAGIDETIQKMQCEVSLIDDNIRSVVRGQTNTGQDGQLAL
CEAQKVISSLFSHIIDVKTRAERTEEMVKEITRDIKQLDCAKRNLTAAIT
TLNHLHMLVGGIESLNKLIERRSYGEILNPLQAITEVNQHFQQFSDIEEI
KNLSQSVDKIQVTLAQQITEDFKEAFSAKPSSQNQHRLGLNQLADACKVM
SVLDPKVKKELLKWFIAQQLEEYTHLFHENQDIAWLDKIDKRYAWLKRHL
LDFEDKYGPVFPLDWEVSERITVEFCRQTREQLAQIMAKRTNEIDVRLLL
FAINKTQAFEQLLSKRFTGVTLGAQPTDKARVLAEPTTTDGAVGLTVFHD
QIGQCFKPHLDIYIRSIDRNLSELMDKFVEMSREPYKFAEAKTTVYPSSG
DLFVFYKKCMVQCNQLSNEQPMYDLALVFKKYLREYASKVLEGSTPKLVP
ATTSSSIGKSVSLLTRDMQNLSTAAGQVFHNFLKEGDTQRFARDDLVRIC
CVLTTGEYCLETVQQLEDKLKEKVTSAYVSKIDMSEEKDVFHRIISNCIQ
LLVQDLEAGCEASLQAMAKVQWQHINNVGDQSAFISSLCGNFKQTVPTIR
DTLASSRKYFTQFCHRFVAAFIPKFINVLYRCKLTLSDGSNNVLGCEQLL
LDTHSLKTALLELPSVGSSVNRKAPTSYTKVVVKDMTRAEMIIKVVMTPV
QPPAHFTQQVLKLLPDITIAEYQKILDMKAVKRVDQLQLIDLFKHTASAA
AVSGLIEPTTGEEETQGAETVVATSGTTDDAETSAVPTETTTATSSTPKR
AFIFSVGSFTGSADKNADGSSQTGIRKLENLLKKRFPASFLDH

BO33109.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:56:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG3338-PA 887 CG3338-PA 1..887 1..887 4512 100 Plus