BO33110.complete Sequence
2038 bp assembled on 2012-09-18
GenBank Submission: KX798952
> BO33110.complete
GAAGTTATCAGTCGACATGAGCGACAGCGGTGTTTTCGCCTTCGAGCTTG
GCGATGACCTAGCCACACGCTGTGGCAATACACTCACTGGCGTCTTTGTG
CCGGGCTCACGAATCGCACTCAGCGCCTACCGGCATGTGACGCACAGTTC
GCGGGATGAGCCCACAGAGAATGCTGGACAGGTTCCGGTGCTCATCTACA
TGGCGCAGGAGTCGACGCTGTTCGACGAACCCGTTCTCCGCAGCGTACTC
GCCGAGGCGAATGCCACGTTCGCCACGCTGCAACAGTTGGGTTCGCGGGC
CACACGTGCCGAGTATGTGAATATATCCCGGGCATACAGGAGCATTGTGC
GCTCATGCCTGGAGAAGCTGGAGCAGGCAAAAAAATCGCCGGAGGTTCAG
ACAGATGAGGCGCGCCTGCAACGCTTATGTGATGCCATCGTTGTGTTCTA
TGCGGCAGAATGCCTGTGGCATCTCTTCGAGATTCTGTACATTCAGAGCA
ATCAGCTGGTGGTGCCGCAGCTGCTCGACTGGGCGCGTTTCCACTCGCCG
CACGCAGAGGACAGAGCCACGGATCTACTGCTCATGGGAGAGGAGGCCAG
CGAATCTGATGACTATTGGAGCATTGTCAAATCACTCATTATGCTGGGCG
AAATAGATGTTACGAGAGCAGTTCTCTCGCAGAATCGCAAAGCTGGACAA
ACGAGCTTCAAGGCGGCCGAACAGATCCTGAAGTCCATGCCAGTGTATCA
AGAGGGCTATGCCCTGCAGAAGTTTCACTCGCAGTGGGAGTTCTGGCACG
TGGATACGGAACGCAAGATTCAGTCCGGCTTATTTGCCACGGAGCCGGAG
CTGGAGCAGTTGATTCGTCTGGTCGCCGGCGACAGCGAGCAGTGGGATGC
TGGCATCAAAGAGTCCCAGGATTTCTATGAATACCTGCCAGGATACCTGC
TCTTTACCAAGCCCACCTGCAAACCCTTTGAGCTGAAAATAGCGGCAGCC
AAATGGCTAAACCGATGGTGTCTTCTCCGGCCGGAAAGAGAGCAGTGCAG
CATGAACCGCATGGTTTCTCAGCTTATGGATCACGATCTTAGACTATTTA
TATACGATGCTCAAAAACTTAACGACACACACTGGTTCTCAACGCATTTG
ATTGATCTTATCCATCATTGTGGTCAGCTGAAGAGCTATTTCGATCAGAA
CAACATCGATCTTCCGGCCCTGCGTCACTCAATGATCTATGAGTACGGCA
GCTATCTGATGACGTCCCACAATATGTGGCAACTGGGCATCGACTATCTG
GACTGTTGCAAGCAGGAGGGTCAGGCGGCTATCGAGCTGCTTTTGCCCCG
AATCACTTTGCGCAGCGAGCGGCAAGCCACCAAGCTTATTAACCTGGCCA
GGCAGCGCGGGCTCATAAGCGTAGAACGGGAGATCTGCAAGGTGCTTTCA
AAGCGATCCTACGATAACGAGCGTTATGGAAACGCCCTGGAATGGGCCAT
TCGCTCCAAGGATGTGCTGCTGGTTACGGCGGTAGCTGACTTTATTTTAA
AGCATTACTCGAAAACTGGCTGCATGCTTTGCCCGGACACCATTGCCAAT
GTCGGTGGCCGAATGTTTGCCTCACCGCGCTTGGTGTTTCTCTCCAAGTA
CTTTGAGTTCTATGAGTTCTACCGTACCCGTGATTTTCTTTCTGCCTCCG
AGCTGCTGGTGAATCTTTTGGAATCCAAAATTACGCCAGACTACTTTTGG
CCATCGTTGCTCATCGATTCCATGCCACTGCTAGAGTCCAAAGATCCGAA
GATCTTCGCCAAGGAAACGGTGGCCATTCTGCATCACATTGAAACCGATC
TGGTGCCCATCATCGAACGCGATGTGTCCAAATATGGAAAACACCACACA
GAAACCGTGTTCAAGGACTATCGGGTGGAGAACGTTGACGAAATCATGAA
CCTCCTGCGCCTGGCCTGCGCACGCAATTTGGCCCGAGCATTGATCATTG
AGAACACTTTGCCCGTGGTGGCAAGCTTTCTAGACCAT
BO33110.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:12:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nup75-RA | 2007 | CG5733-PA | 1..2004 | 17..2020 | 10020 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:12:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nup75-RA | 2146 | CG5733-RA | 68..2073 | 15..2020 | 10030 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:12:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18165825..18166987 | 1206..44 | 5815 | 100 | Minus |
| 2R | 25286936 | 2R | 18165418..18165767 | 1552..1203 | 1735 | 99.7 | Minus |
| 2R | 25286936 | 2R | 18165160..18165352 | 1743..1551 | 965 | 100 | Minus |
| 2R | 25286936 | 2R | 18164955..18165102 | 1891..1744 | 740 | 100 | Minus |
| 2R | 25286936 | 2R | 18164767..18164895 | 2020..1892 | 645 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 13:12:42 has no hits.
BO33110.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-18 16:29:46 Download gff for
BO33110.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup75-RA | 59..2062 | 17..2022 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:52:15 Download gff for
BO33110.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup75-RA | 70..2073 | 17..2022 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:23:26 Download gff for
BO33110.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup75-RA | 70..2073 | 17..2022 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:23:26 Download gff for
BO33110.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18164764..18164895 | 1892..2022 | 98 | <- | Minus |
| 2R | 18164955..18165102 | 1744..1891 | 100 | <- | Minus |
| 2R | 18165160..18165350 | 1553..1743 | 100 | <- | Minus |
| 2R | 18165418..18165763 | 1207..1552 | 100 | <- | Minus |
| 2R | 18165825..18166987 | 44..1206 | 100 | <- | Minus |
| 2R | 18167045..18167071 | 17..43 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:52:15 Download gff for
BO33110.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14052269..14052400 | 1892..2022 | 98 | <- | Minus |
| arm_2R | 14052460..14052607 | 1744..1891 | 100 | <- | Minus |
| arm_2R | 14052665..14052855 | 1553..1743 | 100 | <- | Minus |
| arm_2R | 14052923..14053268 | 1207..1552 | 100 | <- | Minus |
| arm_2R | 14053330..14054492 | 44..1206 | 100 | <- | Minus |
| arm_2R | 14054550..14054576 | 17..43 | 100 | | Minus |
BO33110.pep Sequence
Translation from 16 to 2038
> BO33110.pep
MSDSGVFAFELGDDLATRCGNTLTGVFVPGSRIALSAYRHVTHSSRDEPT
ENAGQVPVLIYMAQESTLFDEPVLRSVLAEANATFATLQQLGSRATRAEY
VNISRAYRSIVRSCLEKLEQAKKSPEVQTDEARLQRLCDAIVVFYAAECL
WHLFEILYIQSNQLVVPQLLDWARFHSPHAEDRATDLLLMGEEASESDDY
WSIVKSLIMLGEIDVTRAVLSQNRKAGQTSFKAAEQILKSMPVYQEGYAL
QKFHSQWEFWHVDTERKIQSGLFATEPELEQLIRLVAGDSEQWDAGIKES
QDFYEYLPGYLLFTKPTCKPFELKIAAAKWLNRWCLLRPEREQCSMNRMV
SQLMDHDLRLFIYDAQKLNDTHWFSTHLIDLIHHCGQLKSYFDQNNIDLP
ALRHSMIYEYGSYLMTSHNMWQLGIDYLDCCKQEGQAAIELLLPRITLRS
ERQATKLINLARQRGLISVEREICKVLSKRSYDNERYGNALEWAIRSKDV
LLVTAVADFILKHYSKTGCMLCPDTIANVGGRMFASPRLVFLSKYFEFYE
FYRTRDFLSASELLVNLLESKITPDYFWPSLLIDSMPLLESKDPKIFAKE
TVAILHHIETDLVPIIERDVSKYGKHHTETVFKDYRVENVDEIMNLLRLA
CARNLARALIIENTLPVVASFLDH
BO33110.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:36:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nup75-PA | 668 | CG5733-PA | 1..668 | 1..668 | 3477 | 100 | Plus |
