BO33111.complete Sequence
4255 bp assembled on 2012-09-19
GenBank Submission: KX795793
> BO33111.complete
GAAGTTATCAGTCGACATGTCGGATTCGTATTATCAGGGCGAATACATCA
AGCATCCCGTTCTGTACGAGCTCAGTCACAAATATGGTTTCACAGAGAAT
CTGCCGGAGAGCTGTATGTCCATACGGCTGGAGGAGATCAAGGAGGCCAT
TCGGCGAGAGATCCGCAAGGAGCTGAAGATCAAAGAGGGCGCCGAGAAGC
TCCGCGAGGTGGCTAAAGATCGACGATCCCTCAGCGATGTGGCCGTTCTT
GTCAAGAAGAGCAAAAGTAAACTTGCCGAGCTGAAGTCCGAGTTGCAGGA
GCTCGAGAGTCAAATCCTCCTGACATCGGCCAACACCGCCGTCAATAGTA
ATGGACAAGAATCGATCACTGCCTGCATTGATCCCAATGGCGGCTTCTTG
GTCAGCGGTGCAGTTGGTGGCTTGGGCGGCGGAAACACGGCTCTGGAGGG
CGGCGCACCGGCCACTGCCAATGACAAAGTGCTCGCCTCGCTGGAGAAGC
AGCTGCAGATCGAGATGAAGGTGAAGACCGGGGCGGAAAACATGATCCAG
TCGCTGGGCATCGGATGCGACAAGAAGCTGCTGGCGGAAGCCCACCAGAT
GCTGGCCGACTCGAAGGCCAAGATTGAGTTTTTGCGCCTGCGCATCATCA
AGGTGAAACAGAACCGCGAGCAGGCCGATCGCCTCAAGGCCTCGCGCCAG
ATGATCGACGAGCATGGCCAGACGATCGGCGGGAACAACAGCAGCCAGCC
GCAGAGCCTGGAGACGACGCTGGAGGAGCGAATCGAGGAGCTCCGCCATC
GACTGCGAATCGAGGCAGCCGTCGTCGATGGAGCCAAGAATGTTATACGC
ACGCTGCAGACGGCGAATAGGGCACCGGACAAGAAGGCTTTGCAGGAGGC
CCATGGACGTTTGTCGGAATCGTCGCGAAAACTAGATCTCTTGCGCTACT
CCTTGGATTTACGACGCCAGGAGCTGCCCGCCGATTCGCCCGCCGCCCAG
CAATTAAAAACGGAGCTGCAGATCGTCCAGCTATCGACCTCCCCAGCTCC
GGTCACCTACACGTCACTGCAGTCCGGACAAGCGGGCATACTCGGCGGAA
AGCCGTACCAGTCGGTATCCTCGCTTGGACGCTGTGCCAGTGTCACCGGA
AAACTGGAGGTTCGCTTGCTGGGCTGTCAAGATTTGCTGGAAGATGTGCC
CGGTAGATCGAGGAGGGACAAGGACAACAACTCAAGTCCGGGTGATTTAC
GAAGCTTCGTCAAGGGCGTCACGTCGCGCAGCAGTTCAAAGAGCTATTCG
GTAAAGGATGAGACGTCCATTGAGATCATGGCGGTCATCAAGCTGGACAA
TATCACCGTTGGCCAGACATCGTGGAAGCAATGCTCGCAGCAGGCCTGGG
ATCAGCGCTTCTCCATCGATCTAGACCGGTCGCGCGAACTGGAGATTGGA
GTTTACTGGCGCGACTGGCGATCCCTGTGCGCCGTAAAGGTGCTGCGCCT
TGAAGAGTTCATCGACGATGTACGACATGGCATGGCATTGCAGCTGGAGC
CACAAGGTCTGCTATTTGCGGAGGTCAAGTTCTTGAACCCCATGATTTCA
CAGAAGCCAAAGCTGAGGCGCCAGCGTATGATCTTCAACAGGCAGCAAGC
GAAGAACATCTCGCGGGCCAAGCAGATGAACATTAATGTGGCCACATGGG
GCCGCCTGCTTAAGCGGAATGCTCCTAACCATGTGCACATGGGATCGGCA
GGATCAGGATCTTCTCTAACCGGTAGCTCGCCTATGGTGGTTGGTGGGTC
TCGCGACTCTGAGTCTCCGATTTCGAGGACTCCCTCATCCGACGCACTGG
TGGAACCGGAGCCCTACACGCCCGGAGAGCAGGCACAGAACTTGGAATTC
GATCCCGATGCAGGAATTAATGAACACGTGGAGACGCCAGGTGAATACCC
GGATCCGGCGGCCAGTGGTCTGAGCGGAATGCGACCCCTGTCCATGCACA
TGCAGGGAATTAGTGTGCTGCCCCCGGAATCGCCACCCGTGGCCACCGGA
GCAGCTGGTCGGCCCAATACGCTCAGCTTACAGATGCCGGGTGCCAGTAA
AGGACAGGTGATCCAAGGCGGACGGACTGCGGCGCCTACAACGGCGCCAC
CGCCACCACCTGTGCTCAAGGCGACATCCACCACTCCGATATTGGATCAG
GAGCTGCAGGATGCCCTGCACGAATTCGATTTCCTGTCGGACCTGGACTC
ACGTCCCACCACGCTGCGTCGCCTGCTGAAGGAGCAGAAGATGGCGCTGG
ATGCCGGCGCGCTGGAGAATCTGCTGCTGCAGCAGCAACAGACTGAGCAG
CAGGCACTGCAGCAGCGCCAGCGCCAGGAGCAGCTGCGTCTGCAGCAGTT
TCAGGAGGCGCAGCGCCAGGCGATCCTGGACCTGTGCGTGAAACAGAGAG
AGCCCGCGGAGCAGACATCACCCACCCTTGCCAACCAAACGCCGACGTTC
CCACCGCTTGCCAGCAATCAGATCATGCCAAGCTTAAATGCCCGCCCTTG
CCAAAGCCAAAGCCCAAACCACAACGAATTTCAGTTGCAGCCGCAGCCAC
CACATCCCGCCCAGAAACCGACGAATCCCGAACCACCGTCCGCTGTGGAA
CAGCAGCTGCACCGTCCGGTCCTAATCCTGCCGCCCGTGGTGCTCCTGGG
TGGTCGGGAGGAGGACCGTTCGGTGCCACCATCGCCACTAGTCGAGTATC
CCGAGGACGACGACGAGTATCTGTATCGTGGTAGCAACGAAAACCTGGGC
ACCAGGCTGCACTCCAGCCACAGTTCCAGTGCCGGCGATCGTTTCTGTGT
GGAGGTTATACCACAGTTGGGGAAGCTTTACGTGGGCAGTAGCCAGCAGC
AGTATGCGCAGCAGTCATCGCCCATCATCCAGGAGCCAGCTACTCCTACT
ATTTACGGAAACAGCGCCGCAGCCGGAGCGCCGCAGTTCCCGCAGCCCGC
CCAAAGGCAAGAGAAGCAGCCTCCGCAGCAGCAGCCCATCTACGCTAACC
AGTATGAGCTGAATGTGGCCAAGGCGGCAGCTGCAGCATCTGTTTACTCA
CCCAGCTCCTCCACCACCAGCAACTCCAATCAACAGCAGCAGCAGCAGCG
CCGGAATGTGGCCCGTGGACTGCAGTATCGTGAATCTGGAGGACTCGAGA
CTGGACGTGCTGGCAAGCAGCCACCCAATGCGGGCATGTTGTCAATGGAC
AACTTCCGTTTGCTAAGCGTTCTTGGTCGCGGCCACTTTGGCAAGGTGAT
TCTGTCCCAATTGCGAAGCAACAACCAGTACTACGCTATTAAGGCACTGA
AGAAGGGAGACATCATTGCCCGCGACGAAGTGGAGTCCCTGCTTAGCGAA
AAGCGCATCTTCGAGGTGGCCAACGCCATGCGCCATCCGTTCTTAGTTAA
CTTGTATTCGTGCTTCCAGACTGAGCAACACGTATGCTTTGTGATGGAAT
ACGCTGCTGGCGGAGATTTGATGATGCACATCCACACGGACGTGTTCCTA
GAGCCGAGAGCCGTTTTCTACGCCGCTTGTGTGGTTCTGGGCCTGCAGTA
CCTGCACGAGAACAAGATCATCTACCGGGACCTGAAGCTGGACAATTTGC
TTTTGGACACGGAAGGATATGTGAAAATTGCGGACTTTGGTTTGTGCAAG
GAGGGCATGGGCTTTGGTGATCGCACGGGCACTTTCTGTGGTACGCCCGA
GTTTCTGGCACCGGAAGTGCTCACGGAAACTTCCTACACACGAGCTGTGG
ATTGGTGGGGCTTGGGTGTGTTGATCTTTGAGATGTTGGTTGGTGAGTCC
CCATTCCCTGGTGACGATGAGGAGGAAGTATTCGATTCAATTGTCAACGA
TGAGGTGCGCTATCCGCGCTTCCTATCGCTGGAGGCCATAGCCGTGATGC
GTAGGCTTTTGCGCAAGAATCCAGAGAGACGTCTGGGATCTTCGGAACGG
GATGCGGAGGATGTTAAGAAACAGGCATTCTTCCGGTCAATTGTGTGGGA
TGACCTGCTCCTGCGAAAGGTTAAACCACCATTTGTGCCGACAATTAACC
ACTTGGAGGATGTGTCAAACTTTGACGAGGAGTTCACGTCGGAGAAGGCT
CAGCTTACGCCACCGAAGGAGCCGCGACACTTGACCGAGGAGGAGCAGTT
GCTCTTCCAGGACTTTTCATACACGGCCGAATGGTGTGCAAGCTTTCTAG
ACCAT
BO33111.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:02:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pkn-RC | 4224 | CG2049-PC | 1..4221 | 17..4237 | 21105 | 100 | Plus |
| Pkn-RG | 4506 | CG2049-PG | 304..4503 | 38..4237 | 21000 | 100 | Plus |
| Pkn-RD | 4269 | CG2049-PD | 67..4266 | 38..4237 | 21000 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:02:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pkn-RC | 4872 | CG2049-RC | 420..4641 | 16..4237 | 21110 | 100 | Plus |
| Pkn-RG | 6552 | CG2049-RG | 596..4795 | 38..4237 | 21000 | 100 | Plus |
| Pkn-RD | 6520 | CG2049-RD | 564..4763 | 38..4237 | 21000 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:02:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9258840..9260146 | 2203..897 | 6535 | 100 | Minus |
| 2R | 25286936 | 2R | 9257406..9258062 | 2858..2202 | 3285 | 100 | Minus |
| 2R | 25286936 | 2R | 9255089..9255711 | 3475..2853 | 3115 | 100 | Minus |
| 2R | 25286936 | 2R | 9265489..9266030 | 899..358 | 2710 | 100 | Minus |
| 2R | 25286936 | 2R | 9254651..9255024 | 3847..3474 | 1870 | 100 | Minus |
| 2R | 25286936 | 2R | 9267655..9267979 | 359..35 | 1625 | 100 | Minus |
| 2R | 25286936 | 2R | 9254275..9254416 | 4096..3955 | 710 | 100 | Minus |
| 2R | 25286936 | 2R | 9254067..9254207 | 4237..4097 | 705 | 100 | Minus |
| 2R | 25286936 | 2R | 9254481..9254590 | 3955..3846 | 550 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:02:52 has no hits.
BO33111.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-19 09:41:12 Download gff for
BO33111.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pkn-RC | 421..4641 | 17..4239 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:49:12 Download gff for
BO33111.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pkn-RC | 421..4641 | 17..4239 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:56:05 Download gff for
BO33111.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pkn-RC | 421..4641 | 17..4239 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:56:05 Download gff for
BO33111.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9254275..9254415 | 3956..4096 | 100 | <- | Minus |
| 2R | 9254481..9254588 | 3848..3955 | 100 | <- | Minus |
| 2R | 9254065..9254207 | 4097..4239 | 98 | <- | Minus |
| 2R | 9254651..9255022 | 3476..3847 | 100 | <- | Minus |
| 2R | 9255089..9255709 | 2855..3475 | 100 | <- | Minus |
| 2R | 9257410..9258060 | 2204..2854 | 100 | <- | Minus |
| 2R | 9258840..9260144 | 899..2203 | 100 | <- | Minus |
| 2R | 9265490..9266028 | 360..898 | 100 | <- | Minus |
| 2R | 9267655..9267976 | 38..359 | 100 | <- | Minus |
| 2R | 9283828..9283848 | 17..37 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:49:12 Download gff for
BO33111.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5141570..5141712 | 4097..4239 | 98 | <- | Minus |
| arm_2R | 5141780..5141920 | 3956..4096 | 100 | <- | Minus |
| arm_2R | 5141986..5142093 | 3848..3955 | 100 | <- | Minus |
| arm_2R | 5142156..5142527 | 3476..3847 | 100 | <- | Minus |
| arm_2R | 5142594..5143214 | 2855..3475 | 100 | <- | Minus |
| arm_2R | 5144915..5145565 | 2204..2854 | 100 | <- | Minus |
| arm_2R | 5146345..5147649 | 899..2203 | 100 | <- | Minus |
| arm_2R | 5152995..5153533 | 360..898 | 100 | <- | Minus |
| arm_2R | 5155160..5155481 | 38..359 | 100 | <- | Minus |
| arm_2R | 5171333..5171353 | 17..37 | 100 | | Minus |
BO33111.pep Sequence
Translation from 16 to 4255
> BO33111.pep
MSDSYYQGEYIKHPVLYELSHKYGFTENLPESCMSIRLEEIKEAIRREIR
KELKIKEGAEKLREVAKDRRSLSDVAVLVKKSKSKLAELKSELQELESQI
LLTSANTAVNSNGQESITACIDPNGGFLVSGAVGGLGGGNTALEGGAPAT
ANDKVLASLEKQLQIEMKVKTGAENMIQSLGIGCDKKLLAEAHQMLADSK
AKIEFLRLRIIKVKQNREQADRLKASRQMIDEHGQTIGGNNSSQPQSLET
TLEERIEELRHRLRIEAAVVDGAKNVIRTLQTANRAPDKKALQEAHGRLS
ESSRKLDLLRYSLDLRRQELPADSPAAQQLKTELQIVQLSTSPAPVTYTS
LQSGQAGILGGKPYQSVSSLGRCASVTGKLEVRLLGCQDLLEDVPGRSRR
DKDNNSSPGDLRSFVKGVTSRSSSKSYSVKDETSIEIMAVIKLDNITVGQ
TSWKQCSQQAWDQRFSIDLDRSRELEIGVYWRDWRSLCAVKVLRLEEFID
DVRHGMALQLEPQGLLFAEVKFLNPMISQKPKLRRQRMIFNRQQAKNISR
AKQMNINVATWGRLLKRNAPNHVHMGSAGSGSSLTGSSPMVVGGSRDSES
PISRTPSSDALVEPEPYTPGEQAQNLEFDPDAGINEHVETPGEYPDPAAS
GLSGMRPLSMHMQGISVLPPESPPVATGAAGRPNTLSLQMPGASKGQVIQ
GGRTAAPTTAPPPPPVLKATSTTPILDQELQDALHEFDFLSDLDSRPTTL
RRLLKEQKMALDAGALENLLLQQQQTEQQALQQRQRQEQLRLQQFQEAQR
QAILDLCVKQREPAEQTSPTLANQTPTFPPLASNQIMPSLNARPCQSQSP
NHNEFQLQPQPPHPAQKPTNPEPPSAVEQQLHRPVLILPPVVLLGGREED
RSVPPSPLVEYPEDDDEYLYRGSNENLGTRLHSSHSSSAGDRFCVEVIPQ
LGKLYVGSSQQQYAQQSSPIIQEPATPTIYGNSAAAGAPQFPQPAQRQEK
QPPQQQPIYANQYELNVAKAAAAASVYSPSSSTTSNSNQQQQQQRRNVAR
GLQYRESGGLETGRAGKQPPNAGMLSMDNFRLLSVLGRGHFGKVILSQLR
SNNQYYAIKALKKGDIIARDEVESLLSEKRIFEVANAMRHPFLVNLYSCF
QTEQHVCFVMEYAAGGDLMMHIHTDVFLEPRAVFYAACVVLGLQYLHENK
IIYRDLKLDNLLLDTEGYVKIADFGLCKEGMGFGDRTGTFCGTPEFLAPE
VLTETSYTRAVDWWGLGVLIFEMLVGESPFPGDDEEEVFDSIVNDEVRYP
RFLSLEAIAVMRRLLRKNPERRLGSSERDAEDVKKQAFFRSIVWDDLLLR
KVKPPFVPTINHLEDVSNFDEEFTSEKAQLTPPKEPRHLTEEEQLLFQDF
SYTAEWCASFLDH
BO33111.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:38:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pkn-PC | 1407 | CG2049-PC | 1..1407 | 1..1407 | 7212 | 100 | Plus |
| Pkn-PD | 1422 | CG2049-PD | 20..1422 | 5..1407 | 7180 | 99.9 | Plus |
| Pkn-PG | 1501 | CG2049-PG | 101..1501 | 7..1407 | 7176 | 99.9 | Plus |
| Pkn-PN | 1477 | CG2049-PN | 1..1477 | 1..1407 | 6665 | 90.1 | Plus |
| Pkn-PM | 1260 | CG2049-PM | 1..868 | 1..857 | 3706 | 86.7 | Plus |
