BO33112.complete Sequence
1642 bp assembled on 2012-10-16
GenBank Submission: KX798860
> BO33112.complete
GAAGTTATCAGTCGACATGTCCAAGAGAAGTTGCCAGATACTCACCCTGT
TGGGCTTGTGCCTGGTCTGTCATGAGGCGACCTTGGTCGGGGGCCACGTG
CTGGTTTACCGGAAAGCAACCAGCCAGTTGATCGAGGAGTTCAATGATCT
GCCAGCTCAATTCGGTCCCAATCTGCCTTCAAATGGTCTCAAAGTGTATG
TGGTTCCCGCTAGGCGCCCTTATTACGGTTGTGATAGCCTGGACAGACCA
CCGCACCTGAAATACCCACCCTCAGCCAAATTTGTGGCACTTGTAGCGCG
TGGCGAATGCGTCTTTGAGCGTAAGATACGAGTGGCCCAGAATGCGAGTT
ATTCTGCTGTGATTGTTTACAATAATGAAGGCGATGACTTGGAGCAAATG
TCCGCCGAAAACATAACGGGTATAAGAATACCCTCGGTTTTCGTGGGCCA
CACGACGGGTAAAGCGCTGGCCACTTACTTTACGACCGAGGTGGTGCTAA
TCATCAACGATGAGCTGCCCTTCAATATCAATACACAGTTAATATTGCCG
TTTTCCATTCTGATCGGTATGTGCTTCATCATAATGGTTATCTATATGAT
CTACAAGTGCATCCGCGAGCAGCGCCGCTTGCGTCGCCATCGACTGCCAA
AGAGCATGCTGAAGAAATTGCCAGTGCTCCGATATACCAAGAACAACGCA
AACAACAAGTACGACACCTGTGTGATCTGTCTGGAGGACTTCATAGAGGA
CGATAAGCTTCGCGTGCTGCCCTGCTCACATCCCTATCACACGCACTGCA
TTGATCCATGGCTTACCGAAAACCGTCGGGTGTGTCCCATTTGTAAGCGC
AAGGTTTTTACGAAGGGCGAAGCGCGTGCAAGTCGGAGTCGACAGCCTTC
TTTGGATAATGTCACGGATACGGATGACGACACAACGCCGCTGCTGCAGC
AACAGCAGTCCAATGGTAGGCAGGTGGGTCAAGTGAGCTCGGCTTCTTCG
GCTGGTGGAGCAGCTGGGAGCAGCTCAAGCGTTGCGGCGGCGGCTGTCGC
TGGAACCACGCGACATGGAACCTTCCGCCGTGGTCACGCCGGTCGAAATC
CGTTCGAGGAGTCCCAAAGCTCTGACGATGAGAACGCTCTGCTGGCCTCT
ACTGTGCGCCCGGCCACGTCTTCTGGAGCACATGAACGCATCAATCCCTT
TGATCGTGCTCCGAATCTACCGGCCCACCTAGCCGAACAGTTAACTGAGA
GTCGTCGCTCGGTCTGGTCGAGAATAAATTTTGCCTCGTTCTTCCGCCGG
CAGCCAGCTGTTATTAGTGTGGCGGCGCCACCCTATCTGGAGCGCGTTGA
GTCCGGTACCAGTGCCATGGGTCTGCCGGTGACGGGGACAATTGCTGTAG
CCTCGCCCGCATCGAACAACATCCTCAATCCGAATTTAAGCGGCTCCTTT
AAGGACGAAGACGATATGCCACCGCATCGTTCGATCTACGAACCGATAGC
AATCAGCACGCCTGCAGCTGACTCAGCAACAGTCGACGATTCGGCGTTTC
TGCAAACGCCCACGCAAGGCGGCATAGGCGTGGCCGCCCTGCCGCACAGC
GCATCCGATCGCCAGTTTCTCATAGCAAGCTTTCTAGACCAT
BO33112.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:53:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| godzilla-RD | 1611 | CG10277-PD | 1..1608 | 17..1624 | 8040 | 100 | Plus |
| godzilla-RC | 1611 | CG10277-PC | 1..1608 | 17..1624 | 8040 | 100 | Plus |
| godzilla-RB | 1611 | CG10277-PB | 1..1608 | 17..1624 | 8040 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:53:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| godzilla-RD | 3037 | CG10277-RD | 435..2042 | 17..1624 | 8040 | 100 | Plus |
| godzilla-RC | 3158 | CG10277-RC | 556..2163 | 17..1624 | 8040 | 100 | Plus |
| godzilla-RB | 3378 | CG10277-RB | 776..2383 | 17..1624 | 8040 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:53:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6386336..6386689 | 783..1136 | 1770 | 100 | Plus |
| 3R | 32079331 | 3R | 6386970..6387309 | 1285..1624 | 1700 | 100 | Plus |
| 3R | 32079331 | 3R | 6385747..6385943 | 392..588 | 985 | 100 | Plus |
| 3R | 32079331 | 3R | 6386002..6386198 | 586..782 | 985 | 100 | Plus |
| 3R | 32079331 | 3R | 6385356..6385531 | 125..300 | 880 | 100 | Plus |
| 3R | 32079331 | 3R | 6386753..6386901 | 1136..1284 | 745 | 100 | Plus |
| 3R | 32079331 | 3R | 6385148..6385258 | 17..127 | 555 | 100 | Plus |
| 3R | 32079331 | 3R | 6385590..6385682 | 300..392 | 465 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:53:21 has no hits.
BO33112.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-16 14:02:20 Download gff for
BO33112.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10277-RC | 596..2203 | 17..1626 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:57:03 Download gff for
BO33112.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10277-RB | 776..2383 | 17..1626 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:16:09 Download gff for
BO33112.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| godzilla-RB | 776..2383 | 17..1626 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:16:09 Download gff for
BO33112.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6385748..6385941 | 393..586 | 100 | -> | Plus |
| 3R | 6386003..6386198 | 587..782 | 100 | -> | Plus |
| 3R | 6385148..6385258 | 17..127 | 100 | -> | Plus |
| 3R | 6385359..6385531 | 128..300 | 100 | -> | Plus |
| 3R | 6385591..6385682 | 301..392 | 100 | -> | Plus |
| 3R | 6386336..6386689 | 783..1136 | 100 | -> | Plus |
| 3R | 6386754..6386901 | 1137..1284 | 100 | -> | Plus |
| 3R | 6386970..6387309 | 1285..1626 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:57:03 Download gff for
BO33112.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2210870..2210980 | 17..127 | 100 | -> | Plus |
| arm_3R | 2211470..2211663 | 393..586 | 100 | -> | Plus |
| arm_3R | 2211725..2211920 | 587..782 | 100 | -> | Plus |
| arm_3R | 2212058..2212411 | 783..1136 | 100 | -> | Plus |
| arm_3R | 2212476..2212623 | 1137..1284 | 100 | -> | Plus |
| arm_3R | 2212692..2213031 | 1285..1626 | 99 | | Plus |
| arm_3R | 2211081..2211253 | 128..300 | 100 | -> | Plus |
| arm_3R | 2211313..2211404 | 301..392 | 100 | -> | Plus |
BO33112.pep Sequence
Translation from 16 to 1642
> BO33112.pep
MSKRSCQILTLLGLCLVCHEATLVGGHVLVYRKATSQLIEEFNDLPAQFG
PNLPSNGLKVYVVPARRPYYGCDSLDRPPHLKYPPSAKFVALVARGECVF
ERKIRVAQNASYSAVIVYNNEGDDLEQMSAENITGIRIPSVFVGHTTGKA
LATYFTTEVVLIINDELPFNINTQLILPFSILIGMCFIIMVIYMIYKCIR
EQRRLRRHRLPKSMLKKLPVLRYTKNNANNKYDTCVICLEDFIEDDKLRV
LPCSHPYHTHCIDPWLTENRRVCPICKRKVFTKGEARASRSRQPSLDNVT
DTDDDTTPLLQQQQSNGRQVGQVSSASSAGGAAGSSSSVAAAAVAGTTRH
GTFRRGHAGRNPFEESQSSDDENALLASTVRPATSSGAHERINPFDRAPN
LPAHLAEQLTESRRSVWSRINFASFFRRQPAVISVAAPPYLERVESGTSA
MGLPVTGTIAVASPASNNILNPNLSGSFKDEDDMPPHRSIYEPIAISTPA
ADSATVDDSAFLQTPTQGGIGVAALPHSASDRQFLIASFLDH
BO33112.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:58:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| godzilla-PD | 536 | CG10277-PD | 1..536 | 1..536 | 2781 | 100 | Plus |
| godzilla-PC | 536 | CG10277-PC | 1..536 | 1..536 | 2781 | 100 | Plus |
| godzilla-PB | 536 | CG10277-PB | 1..536 | 1..536 | 2781 | 100 | Plus |
| godzilla-PA | 536 | CG10277-PA | 1..536 | 1..536 | 2781 | 100 | Plus |
| gol-PE | 461 | CG2679-PE | 141..347 | 89..280 | 208 | 28.7 | Plus |
