BO33116.complete Sequence
448 bp assembled on 2012-08-22
GenBank Submission: KX799218
> BO33116.complete
GAAGTTATCAGTCGACATGCAAAACCTCTCCATATCCTGCTCATTGGTCT
GCCTCATCATTCTGGGTAGTGCCGCCCTTGTGGGCGCCTTTGGCGTCTGC
CAGCGCCAAATCAGCGCCATTTTAATCACAGGAGTGATGTATTTACTGGC
GGCGCTCTTTGCCCTCTTCACGCTCATGATCATTCACTTCAAGCGGCAGC
AGGGACGTCCCATGCTGGACAGCGACTACGATGGCACGGTGGATGGAATA
GTGGCGCGACCAGGAGGCGTGGCCATAATGGCCAAGCCGCTGCTGGGAGC
ACGCATCTTCCTCACCTCGTGGAGCCTCGACTTGGGATGGGGCGGTGTGG
TGCTCTGCGCCATCACCTCGGTACTGTGGATCCTGCTCTCCAAAATCATG
CGGTACAACCCCTTCTCGGCGCTCATGATTGCAAGCTTTCTAGACCAT
BO33116.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:14:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34135-RD | 609 | CG34135-PD | 1..414 | 17..430 | 2070 | 100 | Plus |
| CG34135-RC | 417 | CG34135-PC | 1..414 | 17..430 | 2070 | 100 | Plus |
| CG34135-RB | 417 | CG34135-PB | 1..414 | 17..430 | 2070 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:14:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34135-RD | 3470 | CG34135-RD | 1827..2240 | 17..430 | 2070 | 100 | Plus |
| CG34135-RC | 7398 | CG34135-RC | 5755..6168 | 17..430 | 2070 | 100 | Plus |
| CG34135-RB | 3470 | CG34135-RB | 1827..2240 | 17..430 | 2070 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:14:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8750436..8750714 | 430..152 | 1395 | 100 | Minus |
| 3R | 32079331 | 3R | 8750780..8750915 | 152..17 | 680 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:14:52 has no hits.
BO33116.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-08-22 17:07:53 Download gff for
BO33116.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34135-RB | 1827..2240 | 17..432 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:35 Download gff for
BO33116.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34135-RB | 1827..2240 | 17..432 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:00:24 Download gff for
BO33116.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34135-RB | 1827..2240 | 17..432 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:00:24 Download gff for
BO33116.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8750432..8750713 | 153..432 | 99 | <- | Minus |
| 3R | 8750780..8750915 | 17..152 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:35 Download gff for
BO33116.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4576154..4576435 | 153..432 | 99 | <- | Minus |
| arm_3R | 4576502..4576637 | 17..152 | 100 | | Minus |
BO33116.pep Sequence
Translation from 16 to 448
> BO33116.pep
MQNLSISCSLVCLIILGSAALVGAFGVCQRQISAILITGVMYLLAALFAL
FTLMIIHFKRQQGRPMLDSDYDGTVDGIVARPGGVAIMAKPLLGARIFLT
SWSLDLGWGGVVLCAITSVLWILLSKIMRYNPFSALMIASFLDH
BO33116.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:22:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34135-PC | 138 | CG34135-PC | 1..138 | 1..138 | 696 | 100 | Plus |
| CG34135-PB | 138 | CG34135-PB | 1..138 | 1..138 | 696 | 100 | Plus |
| CG34135-PD | 202 | CG34135-PD | 1..138 | 1..138 | 696 | 100 | Plus |
