BO33118.complete Sequence
1672 bp assembled on 2012-10-15
GenBank Submission: KX796802
> BO33118.complete
GAAGTTATCAGTCGACATGGTTATGGTTAGTTCCGCGGTTCTGGGGGCCG
CAGCCGGTACAGGATTGGCCCTGATCCTGGCCGTGACAATCGTCATGTAC
CGCTACTACCTTCTGCGTAAGCGTGGCAAGGAGTGGGACGAACTGGACCG
CTGGGAGGAAACGCGCATTATGCGGAAGCTGCAGATGAAGGAGGTGGCTA
TTGCCAAGGAATGCCAACCCATCCAGCCGGCCAGTCAGCTGCATGGAATG
CACGGCGGCATGGGCCTAAACCATCACCACATGGGCACAGTTTCGGCCAC
CGGAACGGACATCTTGCGCGGACCCGCCGAAGTGTTCCACAGTCCGCTTC
ACTTGCATCACCAAAGTCGCTCCTTTCCGCCGCGCCTCCAGCGCACGCCG
TCCATCTCCAGCCAGAGCAGCGTGGACAGCGCCCCATCCAGGCATTCGGG
TCATCGAGGCTCTTCACCACAGATAAGGACTTTTGGACCAGACGGACGAA
GCTCGCTGCCAAGTGAGCCTGGATTTCCGCACCATTTGGCCAGGTCACCC
AGTCCCATGCGAACCATTTCTTTGGATGCTCGCTGCGGCAGTCCCGCCCA
CTCGGCGGATCCTGGTGATCTGAGGACGCCCAGTCCCTCGCAGAGCAGCT
TGGCATCTTTGGCCGGTGGATCGGGAATGGGAGGCAGCAGTGCGGGAAAG
GGCGTGGCTGGAGGTCGTTGCCTTTCGCCGCTGCTAATACCGCCCAGATC
GCAGCCCGGAGTGGATCCCGCAATGGGACCCGCTTCTCCACTGGGTGCCC
TTCAACCAGATCTCTATCGAATGCCGGACGGACCCGTTTACCTAACAGCT
CCGGAATCCAGTCACGCCGTGGGTCGTTTGCATTTGCGCGTTAAGTACGA
CTACCACCTGTTCGATCTGACGGTTCATCTGATTGAAGCTCACAATCTCA
GCCCCATCGAAGAGGGTGGATTCCGGGATCCCTATGTCCGCCTGATGTTG
CAACCAGAAGTGGACAGCCGGAAGCGACAGACCCACATTCACAGGGGCGA
ATCCAATCCCTACTTTGACCAGCATTTCAAGTTCCCGGTTTCTCGGGATC
AGCTCCAGGGCAAGGAACTGATCCTCCAAGTGCTCGACTACGATCGCTAT
TCGCACAACGACATTATCGGCGAGGTTCGCATCTCTGTGGATGGCCTAGA
TCTCTCCAAGTCAGTGGAGATTTGGGGAGACTTGCTGCGTACCAAGAAAC
CCAAGGAGGATCGACCGGAACTGCTGTGCTCCTTGAACTATTTGCCGCAG
GCCGAGCGATTGACGGTTGTCATTATGAAGGCTAGAAATTTGGATACTCT
TCAGGAACCATATGTCAAGATTTATCTGATTCAAAATGGCAAACGCATCA
AGAAGAAGAAGACGAGCATTACAAAGTCGGACGATCCCACCAATCCCATT
TGGAACGAGGCGTTCACGTTTAATTTGCAATCAAATTATCTTCACAATGC
AGCCATCGAGATCTATGTGGTGGGTGCCGGGAGCGAGGCCACGGAAATCG
GATGCTGCGGACTGGGCCCCCAGGAAAGTGGAACTGGATGCCAGCACTGG
CACGATATGATTAACAATGCCCGAAAACCTACGGCTATGTGGCACTATAT
CCGCGCAAGCTTTCTAGACCAT
BO33118.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:37:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sytbeta-RC | 1641 | CG42333-PC | 1..1638 | 17..1654 | 8190 | 100 | Plus |
| Sytbeta-RD | 1809 | CG42333-PD | 341..1806 | 189..1654 | 7330 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:37:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sytbeta-RC | 3854 | CG42333-RC | 438..2075 | 17..1654 | 8190 | 100 | Plus |
| Sytbeta-RD | 3952 | CG42333-RD | 708..2173 | 189..1654 | 7330 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:37:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15018131..15018621 | 938..448 | 2455 | 100 | Minus |
| 3L | 28110227 | 3L | 15017270..15017552 | 1219..937 | 1415 | 100 | Minus |
| 3L | 28110227 | 3L | 15018689..15018949 | 449..189 | 1305 | 100 | Minus |
| 3L | 28110227 | 3L | 15048731..15048905 | 191..17 | 875 | 100 | Minus |
| 3L | 28110227 | 3L | 15017063..15017214 | 1369..1218 | 760 | 100 | Minus |
| 3L | 28110227 | 3L | 15016474..15016619 | 1654..1509 | 730 | 100 | Minus |
| 3L | 28110227 | 3L | 15016825..15016967 | 1510..1368 | 715 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:37:20 has no hits.
BO33118.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-15 10:05:08 Download gff for
BO33118.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sytbeta-RC | 438..2075 | 17..1656 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:55:52 Download gff for
BO33118.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sytbeta-RC | 438..2075 | 17..1656 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:08:06 Download gff for
BO33118.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sytbeta-RC | 438..2075 | 17..1656 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:08:06 Download gff for
BO33118.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15018690..15018947 | 191..448 | 100 | <- | Minus |
| 3L | 15048732..15048905 | 17..190 | 100 | | Minus |
| 3L | 15016472..15016617 | 1511..1656 | 98 | <- | Minus |
| 3L | 15016825..15016965 | 1370..1510 | 100 | <- | Minus |
| 3L | 15017063..15017212 | 1220..1369 | 100 | <- | Minus |
| 3L | 15017270..15017550 | 939..1219 | 100 | <- | Minus |
| 3L | 15018131..15018620 | 449..938 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:55:52 Download gff for
BO33118.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15011790..15012047 | 191..448 | 100 | <- | Minus |
| arm_3L | 15041832..15042005 | 17..190 | 100 | | Minus |
| arm_3L | 15009572..15009717 | 1511..1656 | 98 | <- | Minus |
| arm_3L | 15009925..15010065 | 1370..1510 | 100 | <- | Minus |
| arm_3L | 15010163..15010312 | 1220..1369 | 100 | <- | Minus |
| arm_3L | 15010370..15010650 | 939..1219 | 100 | <- | Minus |
| arm_3L | 15011231..15011720 | 449..938 | 100 | <- | Minus |
BO33118.pep Sequence
Translation from 16 to 1672
> BO33118.pep
MVMVSSAVLGAAAGTGLALILAVTIVMYRYYLLRKRGKEWDELDRWEETR
IMRKLQMKEVAIAKECQPIQPASQLHGMHGGMGLNHHHMGTVSATGTDIL
RGPAEVFHSPLHLHHQSRSFPPRLQRTPSISSQSSVDSAPSRHSGHRGSS
PQIRTFGPDGRSSLPSEPGFPHHLARSPSPMRTISLDARCGSPAHSADPG
DLRTPSPSQSSLASLAGGSGMGGSSAGKGVAGGRCLSPLLIPPRSQPGVD
PAMGPASPLGALQPDLYRMPDGPVYLTAPESSHAVGRLHLRVKYDYHLFD
LTVHLIEAHNLSPIEEGGFRDPYVRLMLQPEVDSRKRQTHIHRGESNPYF
DQHFKFPVSRDQLQGKELILQVLDYDRYSHNDIIGEVRISVDGLDLSKSV
EIWGDLLRTKKPKEDRPELLCSLNYLPQAERLTVVIMKARNLDTLQEPYV
KIYLIQNGKRIKKKKTSITKSDDPTNPIWNEAFTFNLQSNYLHNAAIEIY
VVGAGSEATEIGCCGLGPQESGTGCQHWHDMINNARKPTAMWHYIRASFL
DH
BO33118.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:56:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sytbeta-PC | 546 | CG42333-PC | 1..546 | 1..546 | 2898 | 100 | Plus |
| Sytbeta-PD | 602 | CG3020-PA | 114..602 | 58..546 | 2609 | 99.8 | Plus |
| Syt1-PE | 472 | CG3139-PE | 188..459 | 280..546 | 468 | 36.7 | Plus |
| Syt1-PI | 472 | CG3139-PI | 186..459 | 280..546 | 464 | 36.8 | Plus |
| Syt1-PC | 472 | CG3139-PC | 186..459 | 280..546 | 464 | 36.8 | Plus |
