BO33121.complete Sequence
3016 bp assembled on 2012-09-18
GenBank Submission: KX794309
> BO33121.complete
GAAGTTATCAGTCGACATGATTGTCACCGCGAAGTTGGTGGCCATTGGGC
TGGGCCTCGCGCTCACGGCCTTCACCGTATCGACCATTGTCCTGGCCGTC
CAGAAGGCGAATCTTAAGAGTGATTTGCGCGATGCCCAGGAGAAGTTGGA
TCTCCTGGAAGCGGGATATACGAGCACAGCTGCTCCGACAACAGCGAGTA
CTGCGAATCCTGGAAGCACAGCTTCTCCAGGAAGCACAGCTGAGCCGGGA
AGCACAGCTGAACCCGGAAGCACAGCTGAGCCCGGAAGCACAGCTTCTCC
AGGAAGCACTGTGACACCTGGTTCCACTGCTTCAACAAGTGAACCCGGCA
CTACTGCATCCCCCGAAAAAATCGACTACCGACTGCCCGGAACTCTGAAG
CCCACCCACTATGATCTCTATCTGTTTCCCAACATCGAAACTGGTGAATT
CAGTGGACAGGAGACGATTACTATTACAGTTGAAGAGGCCACCGACCAGA
TCGTCCTGCACTCCCTCAACCTAAACATTTCGAGTGTATCCATAATGAAT
ACTGGCAGTGATACTTTGGAGATCCTGGAGACAACAGTAGATGCTGTGAG
GGAATTTTTAATATTCCAGCTGAACGAACCACTGACAAAAGGTAGGACAG
TAAGGCTGCACATTGGATTCGAAGGATCGATGGCCAACAAGATTGTGGGA
CTGTACAGTTCGTCGTATGTGAAGGAGGATGAGACCCGCAAGTGGATCGC
CACCTCCAAGTTCGAACCCACCTACGCTCGCCAGGCTTTTCCCTGCTTTG
ATGAGCCAGCATTGAAGGCCGAGTTCACCATTACTCTAGTGCATCCTTCT
GGGGAGGATTACCATGCCCTGTCCAACATGAACGTGGACTCGAGTGTCAG
CCAGGGAGCCTTCCAGGAGGTCACGTTTGCAAAAAGTGTTCCCATGAGCA
CTTACTTGGCCTGCTTTATTGTCTCCGACTTCGCCTACAAGCAGGTGAGC
ATTGACACTAAGGGCATTGGAGAAACCTTCTCCATGAGTGTCTACGCCAC
TCCGGAGCAACTCGACAAAGTGGATCTGGCTGTGACCATTGGCAAGGGAG
TCATCGAGTACTACATTGACTACTTCCAAATCGCTTATCCGCTGCCCAAA
CTCGATATGGCTGCTATTCCCGACTTCGTCTCGGGCGCCATGGAGCACTG
GGGATTGGTCACCTACAGGGAAACATCGCTTTTGTACGACGAAGCCACGA
GTTCCGCCACCAACAAGCAGCGCATCGCCAGCGTAATTGCCCACGAATTC
GCTCACATGTGGTTTGGAAACTTGGTAACCATGAACTGGTGGAACGATCT
GTGGCTAAACGAAGGATTTGCTAGTTTCGTTGAGTACTTGGGCGTAGATG
CCGTCTATCCAGAATGGAAAATGCGCGATCAATTCACGGTGAGCACTTTG
CACAGCGTACTCACCTTGGACGGAACCCTCGGATCCCACCCGATAATCCA
GACCGTGGAAAATCCGGACCAGATCACGGAGATTTTCGATACCATCACGT
ACTCCAAGGGTTCCTCTCTCGTCCGAATGCTGGAGGATTTCCTGGGGGAG
ACAACCTTCCGCCAGGCGGTTACCAATTATTTAAATGAGTACAAGTACTC
CACGGCGGAAACGGGTAACTTCTTTACAGAGATCGACAAACTGGAATTGG
GATACAATGTCACAGAGATTATGCTAACATGGACGGTGCAGATGGGTCTG
CCAGTGGTCACGATCGAAAAGGTGTCCGATACGGAATACAAATTGACGCA
GAAGCGCTTCTTGTCCAATCCAAACGACTATGACGCCGATCACGAGCCCT
CGGAATTCAACTACCGTTGGTCGATCCCCATCACATATTTCACCAGCTCG
GATTCGGTGGTGCAGCGTCTGTGGTTTTATCATGACCAGAGCGAAATCAC
TGTAACTGTTCCCGCTGCCGTCGAGTGGATTAAGTTTAACGCCGATCAGG
TGGGCTATTATCGCGTTAATTACGATACCGATCTGTGGAATGATCTGGCC
GATCAGTTGGTGGTACAACCAAGTGCATTCGGCTCTGTGGATCGCGCTCA
TCTCCTCAACGATGCTTTTGCCCTGGCCGATTCCACTCAGTTGCCCTATG
CAACGGCCTTCGAGTTGACCAGATACTTGGACAAGGAGACCGATTATGTT
CCCTGGAGTGTGGCTGCTTCCCGTCTGACTTCGCTTAAGAGAACACTCTA
CTACACCAGCACCTATGCCAAGTACAAGAAGTACGCCACAGCTTTGATTG
AGCCCATCTATACCGCACTCACCTGGACAGTCGGCGAGGATCATTTGGAT
AACCGCCTTCGTGTCACTGCTTTGAGTGCCGCCTGTTCTCTGGGTCTGGA
ATCCTGTCTCACTGAAGCCGGAGAGCAGTTCAACGCATGGCTGGCCAAGC
CGGAGGATCGTCCAAAGGCCGATGTCCGTGAAACTGTCTACTACTACGGA
ATACAGTCCGTTGGAAGCCAGGAGGATTGGGATGCAGTCTGGGAGCTGTT
CGTCAACGAATCCGATGCCAGCGAGAAGTCCAAACTGATGTATGGCCTGT
CTGCCATCCAGATTCCCTGGATTTTGCAGCGCTACATTGACCTGGCGTGG
AACGAGGAATACGTGAGGGGTCAGGACTACTTCACCTGCCTTACCTACAT
CTCTGCGAATCCAGTTGGTGAGTCCCTGGTTTGGGACTATGTCCGGGAGA
ACTGGCAGCGACTGGTGGACCGATTCGGACTCAACGAGCGTTATTTGGGC
AACCTGATTCCCTCGATCACTGCCCGCTTTAGCACCCAAACCAAGCTGGA
GGAGATGGAGCAATTCTTCGCCAAATATCCGGAAGCTGGAGCCGGCACAG
CTGCCCGGGTGAGAGCTCTGGAAACGGTTAAGAACAACATTGTTTGGCTG
GCCGAGAACCTGGAGGGTGTGGACGCCTGGCTGGACAAGCAGCCACTGGC
AAGCTTTCTAGACCAT
BO33121.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:13:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8773-RB | 2985 | CG8773-PB | 1..2982 | 17..2998 | 14910 | 100 | Plus |
| CG32473-RB | 2712 | CG32473-PB | 829..1071 | 1145..1387 | 420 | 78.2 | Plus |
| CG32473-RC | 3078 | CG32473-PC | 1195..1437 | 1145..1387 | 420 | 78.2 | Plus |
| CG32473-RB | 2712 | CG32473-PB | 2356..2591 | 2672..2907 | 280 | 74.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:13:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8773-RB | 3145 | CG8773-RB | 43..3024 | 17..2998 | 14910 | 100 | Plus |
| CG32473-RB | 3002 | CG32473-RB | 962..1204 | 1145..1387 | 420 | 78.2 | Plus |
| CG32473-RC | 3635 | CG32473-RC | 1595..1837 | 1145..1387 | 420 | 78.2 | Plus |
| CG32473-RB | 3002 | CG32473-RB | 2489..2724 | 2672..2907 | 280 | 74.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:13:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13294790..13296098 | 17..1325 | 6545 | 100 | Plus |
| 3R | 32079331 | 3R | 13297522..13298167 | 2353..2998 | 3230 | 100 | Plus |
| 3R | 32079331 | 3R | 13297058..13297463 | 1947..2352 | 2030 | 100 | Plus |
| 3R | 32079331 | 3R | 13296326..13296644 | 1423..1741 | 1595 | 100 | Plus |
| 3R | 32079331 | 3R | 13296704..13296827 | 1737..1860 | 620 | 100 | Plus |
| 3R | 32079331 | 3R | 13296169..13296267 | 1325..1423 | 495 | 100 | Plus |
| 3R | 32079331 | 3R | 13296893..13296978 | 1861..1946 | 430 | 100 | Plus |
| 3R | 32079331 | 3R | 13310537..13310779 | 1145..1387 | 420 | 78.2 | Plus |
| 3R | 32079331 | 3R | 13300196..13300428 | 1136..1368 | 295 | 75.1 | Plus |
| 3R | 32079331 | 3R | 13312272..13312507 | 2672..2907 | 280 | 74.6 | Plus |
Blast to na_te.dros performed 2014-11-28 13:13:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| BS3 | 1790 | BS3 BS3 1790bp | 509..615 | 2618..2511 | 123 | 58.3 | Minus |
BO33121.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-18 16:29:49 Download gff for
BO33121.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8773-RB | 41..3022 | 17..3000 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:52:23 Download gff for
BO33121.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8773-RB | 43..3024 | 17..3000 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:23:41 Download gff for
BO33121.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8773-RB | 43..3024 | 17..3000 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:23:41 Download gff for
BO33121.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13296893..13296978 | 1861..1946 | 100 | -> | Plus |
| 3R | 13294790..13296098 | 17..1325 | 100 | -> | Plus |
| 3R | 13296170..13296267 | 1326..1423 | 100 | -> | Plus |
| 3R | 13296327..13296644 | 1424..1741 | 100 | -> | Plus |
| 3R | 13296709..13296827 | 1742..1860 | 100 | -> | Plus |
| 3R | 13297058..13297463 | 1947..2352 | 100 | -> | Plus |
| 3R | 13297522..13298167 | 2353..3000 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:52:23 Download gff for
BO33121.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9120512..9121820 | 17..1325 | 100 | -> | Plus |
| arm_3R | 9121892..9121989 | 1326..1423 | 100 | -> | Plus |
| arm_3R | 9122049..9122366 | 1424..1741 | 100 | -> | Plus |
| arm_3R | 9122431..9122549 | 1742..1860 | 100 | -> | Plus |
| arm_3R | 9122615..9122700 | 1861..1946 | 100 | -> | Plus |
| arm_3R | 9122780..9123185 | 1947..2352 | 100 | -> | Plus |
| arm_3R | 9123244..9123889 | 2353..3000 | 99 | | Plus |
BO33121.pep Sequence
Translation from 16 to 3016
> BO33121.pep
MIVTAKLVAIGLGLALTAFTVSTIVLAVQKANLKSDLRDAQEKLDLLEAG
YTSTAAPTTASTANPGSTASPGSTAEPGSTAEPGSTAEPGSTASPGSTVT
PGSTASTSEPGTTASPEKIDYRLPGTLKPTHYDLYLFPNIETGEFSGQET
ITITVEEATDQIVLHSLNLNISSVSIMNTGSDTLEILETTVDAVREFLIF
QLNEPLTKGRTVRLHIGFEGSMANKIVGLYSSSYVKEDETRKWIATSKFE
PTYARQAFPCFDEPALKAEFTITLVHPSGEDYHALSNMNVDSSVSQGAFQ
EVTFAKSVPMSTYLACFIVSDFAYKQVSIDTKGIGETFSMSVYATPEQLD
KVDLAVTIGKGVIEYYIDYFQIAYPLPKLDMAAIPDFVSGAMEHWGLVTY
RETSLLYDEATSSATNKQRIASVIAHEFAHMWFGNLVTMNWWNDLWLNEG
FASFVEYLGVDAVYPEWKMRDQFTVSTLHSVLTLDGTLGSHPIIQTVENP
DQITEIFDTITYSKGSSLVRMLEDFLGETTFRQAVTNYLNEYKYSTAETG
NFFTEIDKLELGYNVTEIMLTWTVQMGLPVVTIEKVSDTEYKLTQKRFLS
NPNDYDADHEPSEFNYRWSIPITYFTSSDSVVQRLWFYHDQSEITVTVPA
AVEWIKFNADQVGYYRVNYDTDLWNDLADQLVVQPSAFGSVDRAHLLNDA
FALADSTQLPYATAFELTRYLDKETDYVPWSVAASRLTSLKRTLYYTSTY
AKYKKYATALIEPIYTALTWTVGEDHLDNRLRVTALSAACSLGLESCLTE
AGEQFNAWLAKPEDRPKADVRETVYYYGIQSVGSQEDWDAVWELFVNESD
ASEKSKLMYGLSAIQIPWILQRYIDLAWNEEYVRGQDYFTCLTYISANPV
GESLVWDYVRENWQRLVDRFGLNERYLGNLIPSITARFSTQTKLEEMEQF
FAKYPEAGAGTAARVRALETVKNNIVWLAENLEGVDAWLDKQPLASFLDH
BO33121.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:37:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8773-PB | 994 | CG8773-PB | 1..994 | 1..994 | 5171 | 100 | Plus |
| CG32473-PA | 1012 | CG32473-PA | 5..998 | 3..989 | 2805 | 55.1 | Plus |
| CG32473-PC | 1025 | CG32473-PC | 116..1011 | 98..989 | 2583 | 55.5 | Plus |
| CG32473-PB | 903 | CG32473-PB | 16..889 | 117..989 | 2581 | 56.4 | Plus |
| CG8774-PA | 942 | CG8774-PA | 65..929 | 120..989 | 2425 | 52.8 | Plus |
