BO33126.complete Sequence
1537 bp assembled on 2012-08-22
GenBank Submission: KX798319
> BO33126.complete
GAAGTTATCAGTCGACATGGATGCCATCAAGAAGAAGATGCAAGCGATGA
AAGTCGACAAGGACGGAGCTCTGGAGCGCGCTCTCGTCTGCGAGCAGGAG
GCACGCGATGCTAACACCCGCGCCGAGAAGGCCGAGGAGGAGGCTCGCCA
GCTGCAGAAGAAGATCCAGACCGTTGAGAACGAGCTGGATCAGACCCAGG
AAGCCCTGACCCTGGTCACCGGCAAGCTGGAGGAGAAGAACAAGGCTCTG
CAGAACGCCGAATCCGAGGTTGCCGCTCTGAACCGTCGCATCCAGTTGCT
CGAAGAAGACTTGGAGCGCTCTGAGGAGCGTCTGGGCTCCGCCACAGCCA
AGCTGTCGGAAGCCTCTCAGGCCGCCGATGAGAGCGAACGTGCTCGCAAA
ATTCTTGAGAACCGCGCCCTTGCCGATGAAGAACGCATGGACGCTCTCGA
GAATCAGCTGAAGGAAGCGCGTTTCCTTGCTGAGGAGGCTGACAAGAAAT
ACGATGAGGTTGCCCGTAAATTGGCCATGGTTGAAGCCGATTTGGAACGT
GCCGAAGAGCGTGCCGAGCAGGGTGAAAACAAAATTGTGGAGCTTGAGGA
GGAGCTGCGCGTGGTTGGCAACAACCTGAAGTCCCTGGAAGTCTCTGAGG
AGAAGGCCAACCAACGTGAGGAGGAGTACAAGAACCAGATCAAGACCCTC
AACACCCGTCTAAAGGAGGCTGAGGCTCGTGCTGAGTTCGCTGAACGCTC
CGTTCAGAAATTGCAGAAGGAAGTCGACAGGCTCGAAGACGAGATGATCA
AAGAGATCGAGCACTATGCCCTCGTCGGCGACCAGCTGGACTGGACTTTC
GTGGAGATGATGGGCATGCCGCCATTCTACAACGAGCGCTACCCCAAGCC
GCCCACACCGGAGCTCACCGAGGAGGAGAAGGCCGCCCTGGAGGCCGCTG
CCATTGCCGAGGCCGAGGCGAAGGCTAGGGCCGAGGAGCTGGCTGCCCTC
GGCGAGGAGGCAGGCGCAGAGGCTGGGGAGGGTGGTGCACCGGCGGAGGG
CGCCGCTCCCGGCGAGCCTGGTGCAGCAACTGAGCCCGGCGTCGAGGCAC
CACCGGCCGAACCCGAGAGGATCCCCACGCCGCCACCACCACCACCATTC
GAGTACTCCATCGATTTGCCCCCAGAGGGTGCTGAGGTGCCGTACGTTAG
GAACGCGGAGCCAGGAGACTTTGCTCCGCCCGCCGAAGCAGCACCAGCTG
AAGGAGCCCCACCAGCCGAGGGAGCACCAGCAGCGGAAGGAGCCGCACCA
GCCGAGGGAGCACCCGCTGCAGAGGGCGCTCCACCGGCAGAAGGAGCACC
AGCACCTGCACCTGCTGAGGGTGAAGCTGCTCCACCAGCACCGGCTGCCG
AAGGGGATGCCGCCGCCGCACCTCCACCACCGCCGGCTGAGGGAGAGGCT
GCTCCGGCACCAGCCGAGGGCGAAGCACCACCTGCCGAGGCGGCTCCTGC
TGCTGAAGCACCACCTGCTGCAAGCTTTCTAGACCAT
BO33126.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:16:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tm1-RF | 1506 | CG4898-PF | 1..1503 | 17..1519 | 7500 | 99.9 | Plus |
| Tm1-RO | 858 | CG4898-PO | 1..776 | 17..792 | 3880 | 100 | Plus |
| Tm1-RM | 858 | CG4898-PM | 1..776 | 17..792 | 3880 | 100 | Plus |
| Tm1-RF | 1506 | CG4898-PF | 1221..1298 | 1273..1350 | 180 | 82.1 | Plus |
| Tm1-RF | 1506 | CG4898-PF | 1257..1334 | 1237..1314 | 180 | 82.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:16:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tm1-RF | 1684 | CG4898-RF | 106..1611 | 14..1519 | 7515 | 99.9 | Plus |
| Tm1-RO | 1503 | CG4898-RO | 338..1116 | 14..792 | 3895 | 100 | Plus |
| Tm1-RM | 1253 | CG4898-RM | 88..866 | 14..792 | 3895 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:16:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15305176..15305908 | 787..1519 | 3650 | 99.9 | Plus |
| 3R | 32079331 | 3R | 15295113..15295246 | 257..390 | 670 | 100 | Plus |
| 3R | 32079331 | 3R | 15285227..15285355 | 129..257 | 645 | 100 | Plus |
| 3R | 32079331 | 3R | 15296590..15296710 | 390..510 | 605 | 100 | Plus |
| 3R | 32079331 | 3R | 15284646..15284763 | 14..131 | 590 | 100 | Plus |
| 3R | 32079331 | 3R | 15300747..15300823 | 580..656 | 385 | 100 | Plus |
| 3R | 32079331 | 3R | 15299275..15299347 | 507..579 | 365 | 100 | Plus |
| 3R | 32079331 | 3R | 15303151..15303222 | 717..788 | 360 | 100 | Plus |
| 3R | 32079331 | 3R | 15301009..15301074 | 654..719 | 330 | 100 | Plus |
| 3R | 32079331 | 3R | 15306668..15306744 | 1128..1204 | 250 | 88.3 | Plus |
| 3R | 32079331 | 3R | 15313115..15313197 | 617..699 | 220 | 84.3 | Plus |
Blast to na_te.dros performed 2014-11-28 12:16:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy12 | 10218 | gypsy12 GYPSY12 10218bp | 630..730 | 1334..1434 | 144 | 65.4 | Plus |
| gypsy12 | 10218 | gypsy12 GYPSY12 10218bp | 8512..8612 | 1334..1434 | 144 | 65.4 | Plus |
BO33126.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-08-22 17:07:57 Download gff for
BO33126.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tm1-RF | 109..1611 | 17..1521 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:49 Download gff for
BO33126.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tm1-RF | 109..1611 | 17..1521 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:00:53 Download gff for
BO33126.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tm1-RF | 109..1611 | 17..1521 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:00:53 Download gff for
BO33126.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15284649..15284762 | 17..130 | 100 | -> | Plus |
| 3R | 15285229..15285354 | 131..256 | 100 | -> | Plus |
| 3R | 15295113..15295246 | 257..390 | 100 | -> | Plus |
| 3R | 15296591..15296708 | 391..508 | 100 | -> | Plus |
| 3R | 15299277..15299347 | 509..579 | 100 | -> | Plus |
| 3R | 15300747..15300822 | 580..655 | 100 | -> | Plus |
| 3R | 15301011..15301073 | 656..718 | 100 | -> | Plus |
| 3R | 15303153..15303222 | 719..788 | 100 | -> | Plus |
| 3R | 15305178..15305908 | 789..1521 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:49 Download gff for
BO33126.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11128875..11128944 | 719..788 | 100 | -> | Plus |
| arm_3R | 11110371..11110484 | 17..130 | 100 | -> | Plus |
| arm_3R | 11110951..11111076 | 131..256 | 100 | -> | Plus |
| arm_3R | 11120835..11120968 | 257..390 | 100 | -> | Plus |
| arm_3R | 11122313..11122430 | 391..508 | 100 | -> | Plus |
| arm_3R | 11124999..11125069 | 509..579 | 100 | -> | Plus |
| arm_3R | 11126469..11126544 | 580..655 | 100 | -> | Plus |
| arm_3R | 11126733..11126795 | 656..718 | 100 | -> | Plus |
| arm_3R | 11130900..11131630 | 789..1521 | 99 | | Plus |
BO33126.pep Sequence
Translation from 16 to 1537
> BO33126.pep
MDAIKKKMQAMKVDKDGALERALVCEQEARDANTRAEKAEEEARQLQKKI
QTVENELDQTQEALTLVTGKLEEKNKALQNAESEVAALNRRIQLLEEDLE
RSEERLGSATAKLSEASQAADESERARKILENRALADEERMDALENQLKE
ARFLAEEADKKYDEVARKLAMVEADLERAEERAEQGENKIVELEEELRVV
GNNLKSLEVSEEKANQREEEYKNQIKTLNTRLKEAEARAEFAERSVQKLQ
KEVDRLEDEMIKEIEHYALVGDQLDWTFVEMMGMPPFYNERYPKPPTPEL
TEEEKAALEAAAIAEAEAKARAEELAALGEEAGAEAGEGGAPAEGAAPGE
PGAATEPGVEAPPAEPERIPTPPPPPPFEYSIDLPPEGAEVPYVRNAEPG
DFAPPAEAAPAEGAPPAEGAPAAEGAAPAEGAPAAEGAPPAEGAPAPAPA
EGEAAPPAPAAEGDAAAAPPPPPAEGEAAPAPAEGEAPPAEAAPAAEAPP
AASFLDH
BO33126.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:23:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tm1-PF | 501 | CG4898-PF | 1..501 | 1..501 | 2523 | 100 | Plus |
| Tm1-PK | 518 | CG4898-PK | 1..518 | 1..490 | 1807 | 78.4 | Plus |
| Tm1-PO | 285 | CG4898-PO | 1..282 | 1..282 | 1294 | 95 | Plus |
| Tm1-PM | 285 | CG4898-PM | 1..282 | 1..282 | 1294 | 95 | Plus |
| Tm1-PG | 285 | CG4898-PG | 1..282 | 1..282 | 1294 | 95 | Plus |
