BO33129.complete Sequence
2065 bp assembled on 2012-09-18
GenBank Submission: KX797607
> BO33129.complete
GAAGTTATCAGTCGACATGGCCTCTTCCACTTCGGTTATCCCTACCACCG
TAAATCCCGATCTGCAGAAGGAACGAGATGCAGCCAGCTTTAACAGCGAA
GAATTCGCCGCTTGGTGGGCGGGGGGCGAGGAAGTGCTAAAGTTCAACCG
CGGCGTTCGTGAATATATGGAGAAGGATGTGGATTTGTCGGAGATGCTGC
AGCTGCAAAACAAAACCCACGAAGAGATCATCGAGTTTTCCACGCGTGGA
GCAATCGAAGGCGCCAAGAAGCTACGCCGCCTGCAGGAGGAGCGCAATCC
TGGCGGAGATGTCTACTGGCCGAACTTGTATGACGCTCAAGTGATGTGGG
GTCTCGTTCCCGGTGGCAATCCTTTTGGTGTGATGTACGTGATGCTGGTG
AAAGCTCTGCAGGCTCAGTGCACTCCGGAGCAGTATGAAGAATTCGGCAA
GCGGGTGGAACTCTTCGAGATTTGCGGCACCTATGCCCAAACGGAACTGG
GTCATGGAACCTACCTGCGCGGGCTGGAAACGCGTGCTGATTTTGATCGA
AAGACTGATCAATTTGTACTCAACACCCCCAATATTTCCTCCTACAAGTG
GTGGCCCGGAGGCTTGGGCCACAGCTCCAATCACTGCCTGGTTATGGCTC
AGCTGTACATCGACGGCGACTGCAAGGGTCCGCACATGTTCTTTATTCAG
GTGCGTGATGAAGACACCCACGAACCACTGCCCGGCGTCCACATCGGTGA
TATTGGCAAGAAAATGGGCTTCATTGGCGTAAACAATGGTTTCCTTGGAT
TAAAGAACGTACGGATTCCTCGTACGAGAATGCTGATGCGACATGCTCAG
GTGAAGGCTGATGGATCCTATGTTAGTAGTCCCACCAATGTGCTTACCTA
CTTTGCCATGGTCCGCACGCGTTGTGTAATTGCCAAAAACAATGCCGTGA
TGTTGGCTTCTGCTGCCACCATTGCAACCAGATACTCGGCTGTGCGCCGT
CAGAGCCCAATTAATCCCAACGAACGAGAGCCTCAGATCATGGATCATGT
TACACAGCAAATGAAACTCTTCCCAGAGATTGCCACAAGCGTGGCATACC
GGAAGGCCGGTGATTACTTGTGGAATCTGTACGACGTGACCATCGAGGAT
ATAGAAAACGGAAAATACGAACGTCTGCCGGAGTTGCATTCTCTGTCCTG
CGCTTTGAAAGTTACCTGCTCCATGGACTCCGCTTCTGGTGTAGAGAAAT
TGCGACTGGCCTGTGGTGGTCATGGATTCCTCACCTCATCCAACATGAGC
AGTATATACGTTAGTGCCACCGCAGCTTGCACGTATGAGGGTGAGAACAC
CGTACTGCTTCTGCAGATCGGTCGCTTTTTAATGAAGACGTGGAGAGCCG
CATTGACTGGAGCTCCGTTGCCGCCCACCGTTCGCTATTTGGCCGAGGTG
CAAAAGAATCCGGAGTTTGGCACCTGGACGGGAAGTTGGGAGAACATGGT
TAAGGCCATGCAGTATGCAGCTGCCAATAGAACACAGTTGGCATTCAGGA
GCCTCTCCAAACGTATGTCAAGGGGCGAAACTGAAGCGAACGCAGCTAAT
CACACGGGCATTGAGTTCACCCAGGCGGCAGAGCTCCATGGACGTGCTTT
TGTTTTCAGTGCTTTCTATGAAGCAGTCACCGGTCCTCAATCTAAGACGC
GCTCAGCTAACTTCAATCGAGTCCTGGAGAACCTGTTGGAGCTGTACCTA
GTCAAGGAGACACTTAATCAAATGGGTCACCTGCTGAGATTCATTAACTT
GACCGATACGGATCTCTCCGGGCTGCAGGATCGCTTGGAAACAGTGCTCA
CCAAACTGCGACCTGATGCTGTGGCCATTGTGGATGGCTTTGACTTCAGC
GATCTGCAGCTGAATTCCACTCTGGGCTCTTACGATGGCAATGCCTACGA
GCGTATCTTCGATGCGGCCCTCAAGAATCCGATGAACCAAAAAGCAGTGC
CTAAGTACTTCCATGAGATCCTGAGGCCGTTCATGAAGTCAAACATCGCA
AGCTTTCTAGACCAT
BO33129.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:14:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Acox57D-p-RB | 2034 | CG9707-PB | 1..2031 | 17..2047 | 9990 | 99.5 | Plus |
| Acox57D-p-RA | 2034 | CG9707-PA | 1..2031 | 17..2047 | 9990 | 99.5 | Plus |
| Acox57D-d-RA | 2034 | CG9709-PA | 952..1064 | 968..1080 | 235 | 80.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:14:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Acox57D-p-RB | 2235 | CG9707-RB | 57..2087 | 17..2047 | 9990 | 99.5 | Plus |
| Acox57D-p-RA | 2552 | CG9707-RA | 374..2404 | 17..2047 | 9990 | 99.5 | Plus |
| Acox57D-d-RA | 2252 | CG9709-RA | 1046..1158 | 968..1080 | 235 | 80.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:14:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21387965..21388577 | 1021..1633 | 2960 | 98.9 | Plus |
| 2R | 25286936 | 2R | 21387498..21387903 | 615..1020 | 2030 | 100 | Plus |
| 2R | 25286936 | 2R | 21387142..21387434 | 322..614 | 1450 | 99.7 | Plus |
| 2R | 25286936 | 2R | 21388871..21389128 | 1790..2047 | 1260 | 99.2 | Plus |
| 2R | 25286936 | 2R | 21386915..21387078 | 159..322 | 820 | 100 | Plus |
| 2R | 25286936 | 2R | 21388649..21388806 | 1632..1789 | 775 | 99.4 | Plus |
| 2R | 25286936 | 2R | 21386682..21386825 | 17..160 | 720 | 100 | Plus |
| 2R | 25286936 | 2R | 17762497..17762549 | 476..528 | 205 | 92.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 13:14:16 has no hits.
BO33129.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-18 16:29:53 Download gff for
BO33129.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acox57D-p-RA | 329..2359 | 17..2049 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:52:32 Download gff for
BO33129.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acox57D-p-RA | 374..2404 | 17..2049 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:24:02 Download gff for
BO33129.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acox57D-p-RA | 374..2404 | 17..2049 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:24:02 Download gff for
BO33129.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21388871..21389128 | 1790..2049 | 98 | | Plus |
| 2R | 21386682..21386823 | 17..158 | 100 | -> | Plus |
| 2R | 21386915..21387077 | 159..321 | 100 | -> | Plus |
| 2R | 21387142..21387434 | 322..614 | 99 | -> | Plus |
| 2R | 21387498..21387903 | 615..1020 | 100 | -> | Plus |
| 2R | 21387965..21388577 | 1021..1633 | 98 | -> | Plus |
| 2R | 21388651..21388806 | 1634..1789 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:52:32 Download gff for
BO33129.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17276376..17276633 | 1790..2049 | 98 | | Plus |
| arm_2R | 17274187..17274328 | 17..158 | 100 | -> | Plus |
| arm_2R | 17274420..17274582 | 159..321 | 100 | -> | Plus |
| arm_2R | 17274647..17274939 | 322..614 | 99 | -> | Plus |
| arm_2R | 17275003..17275408 | 615..1020 | 100 | -> | Plus |
| arm_2R | 17275470..17276082 | 1021..1633 | 98 | -> | Plus |
| arm_2R | 17276156..17276311 | 1634..1789 | 99 | -> | Plus |
BO33129.pep Sequence
Translation from 16 to 2065
> BO33129.pep
MASSTSVIPTTVNPDLQKERDAASFNSEEFAAWWAGGEEVLKFNRGVREY
MEKDVDLSEMLQLQNKTHEEIIEFSTRGAIEGAKKLRRLQEERNPGGDVY
WPNLYDAQVMWGLVPGGNPFGVMYVMLVKALQAQCTPEQYEEFGKRVELF
EICGTYAQTELGHGTYLRGLETRADFDRKTDQFVLNTPNISSYKWWPGGL
GHSSNHCLVMAQLYIDGDCKGPHMFFIQVRDEDTHEPLPGVHIGDIGKKM
GFIGVNNGFLGLKNVRIPRTRMLMRHAQVKADGSYVSSPTNVLTYFAMVR
TRCVIAKNNAVMLASAATIATRYSAVRRQSPINPNEREPQIMDHVTQQMK
LFPEIATSVAYRKAGDYLWNLYDVTIEDIENGKYERLPELHSLSCALKVT
CSMDSASGVEKLRLACGGHGFLTSSNMSSIYVSATAACTYEGENTVLLLQ
IGRFLMKTWRAALTGAPLPPTVRYLAEVQKNPEFGTWTGSWENMVKAMQY
AAANRTQLAFRSLSKRMSRGETEANAANHTGIEFTQAAELHGRAFVFSAF
YEAVTGPQSKTRSANFNRVLENLLELYLVKETLNQMGHLLRFINLTDTDL
SGLQDRLETVLTKLRPDAVAIVDGFDFSDLQLNSTLGSYDGNAYERIFDA
ALKNPMNQKAVPKYFHEILRPFMKSNIASFLDH
BO33129.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:37:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Acox57D-p-PB | 677 | CG9707-PB | 1..677 | 1..677 | 3546 | 100 | Plus |
| Acox57D-p-PA | 677 | CG9707-PA | 1..677 | 1..677 | 3546 | 100 | Plus |
| Acox57D-d-PA | 677 | CG9709-PA | 1..677 | 1..677 | 1910 | 53.4 | Plus |
| CG5009-PA | 669 | CG5009-PA | 6..669 | 12..677 | 1703 | 49.5 | Plus |
| CG4586-PA | 677 | CG4586-PA | 2..677 | 11..677 | 1313 | 42.5 | Plus |
