BO33135.complete Sequence
4618 bp assembled on 2012-09-18
GenBank Submission: KX794098
> BO33135.complete
GAAGTTATCAGTCGACATGGCGATGCTTCCGCGGTTGATTCTGCTGCCAC
TGCTCCTGATTTTGCGGATCTCGTGGAGCGATGCTGTGCCTTTGCAGCAG
TTCTCACCGGATCCCGATGACAGCATCGAGAACTGCGGCGGCGAGAATGG
AGCTCCCCTGATGACGCCCTGCAAGAGCGCCATTATCCTGGATGCCCAGA
CGAGCACCACGCTTAAGTGCGAGGACGACGAGCCGATGAGCTGGTGGACC
AGTCAATCGCAATATGTGCATGTGAAGTCCTTCGATAATACGGAGGATCC
GGCTCGACCATTCGGAACTAGCCTGCATCTCATCGAAGTGACGGCTGACT
ATGTGGCAGCCTACTATTGCGTGAAGACTTCGAAATTCAGTCAGATCGCC
AAGGAGGAGCAGTCGGACGAGGCGATGATCGAATTGGTTAATCAAGGATA
CGCCAGCTCCATCTACGTGTACGTGAATGATCCGGACACTAAGCTGGTCG
ATAGTCATAACGTGGTGACGGCACGCCAGTATACCGACGTAGTCATACCC
TGTAAACCAGCCATGCCGGACACAGAGGTGCTGCTAGAGACCAGTAATGG
AGAAATGCATTCCAGCAAATCTGTCGGTCGATACGATCCGCAACGGGGAT
TCACCATCGAAATCCGAAGCATCGTGGATGGCGGAGACTACTACTGCCGA
CCCAATCCGCCATTCCCGCATAACGAAGAGGAGATGACCAGCATAGAAGT
GCGCTTTATTGCAACCGGATTGGATATCCCTCGTACCCAAACGACTAACA
TGGTGTACACATATGCACCAGGTGTCACCGATGGCGATGACGAGGTCCTC
ACTGTTACTAACCAATCGACGGGTAATTTGGCACTAATCCGTGGTGGTGA
TGGAACTTTATCCAGGGAGCGGGCACGGCGAAGTCCAGCCCGCCTGGCTC
CGATGAATGCGTCGCCCTCACCCAGACCAGGGCAAGACGGCAAACCGCTG
CCAAAGCCCGTGATCAGGTCCTCCGTGGAGCATCACGTCTTCACGGACAC
CAACTTCACCCTGGATTGCGAGCAGTCCGCCTACGTTGAATCAGTATACG
GAATGGAATGGTTCACTCCGTCCCGGGATGAGAATCGCATATTTGCCTCC
CAATCAAGAACCGATCCCAAGACCAGGAACAGCACCCATCAGACGGGCAG
GAGCACCTTGACAGTGCTAAATGCACAACCCTCGGACACTGGTCTATACA
AGTGTGTGACAACAGATAATTCTAACCAGAACGTACAACGTGCCACCTAC
AGGATTAAGGTGCTAAAGCAAAACGAAAGTTACCTGAACGTGGGCGAACC
ATCGGGTCATTACAACGTTCAGGAATATGCCAATCGCACGATCCAAATGA
CCGCGAACTTTGAGGGATTTCCGACGCCCTCCTTCAGTTGGTTCAAACCC
GATGGCACCGAGGTGCGACAATCGGAGAATAACTTCAAGATTCTCTCCAC
GGAATTGAGCACAATGCTCCAGGTGCTGAACGCCCAATTGCAGGACAGCG
GCACGTATGTCCTCCGTGGATCCAATTCCTTCGGCGTCGTTCAGCGGGAG
TACAACGTCAGTGTGATGGACGCACCGGCGCTGAAGATGTCGGACGCCTA
TGTCCAGGTGGGATCCGTGGCGCGACTGGAGTGCACAGTACGCTCCTATC
CGCCGGCTATCGTGACCTTCTTCTTCCGCCCCTGCAGCCTGGAACCACAG
TGGCCCACTTGCTCTGTGCTCAATCAGAACTTTAGCTTGCCGAGTGAACA
GGAGAAATATCAGTTCCAGACCCGGCCCAGACCCGGAAAGCTGAGTGTGG
AACGCATATACGAGGTATCCTTCCTGCCCACGGAGCCGGGAATCCTCACA
TGCATTGCCCAAAATATCATTGATGGAAAGGAACGAAGAACCCTGACGAA
GGCGCACGTTCTGCTGGGCAACATTTCCGAGAACATGACCATATATGGCT
TCGATAAGGATCACAAAATCGCCAAGGAGGACAATGTGAACTTCACCTGC
GAGGCGCTGGCCTATCACTTCGATGGAAATCTTAAATGGTTCATCAATGG
AGAGGATTTGAAGGAGTCGGATTCGGTTCACATTGAGACCAGCCATACCA
AGTACTCCTACAAGAGCACTGTACACATCACAACGATATCCGACAGGGAT
CGTGGAACCTATGAGTGCCGGGCCTACCACAACGACAAGGATGCCGTTTA
CAGCAGCCGGGAGATAGACTTGTACGTCCACGATCCCTCTGCTCCTCAGT
GGACAAACGGCGGACAGGAGGGTCACTCGAAAATAAAGCGCAAACTAAGC
CAAACGCTGGAGCTGGAGTGTGCCTCCACAGCGGTTCCCGTGGCAATTGT
GCGTTGGTTTAAGGACGACAAGGAAGTGACCGAATCAAAGCTCAGGCACA
TCATTGAAAAGGAATCCAAGCTGCTGATCACTCACCTGTATCCCGGAGAT
GAAGGCGTCTACAAGTGTGTGGTGGAGAACCGATTGGACAGAATCGAACG
CTCCTTCACGGTAGTGATATCAGATCTGCCCGGCATTAGCATGGCCTGGG
TGTGGTTCGGTGTGATACTATTCCTCATCCTGATCGGTCTGTGCGTCTTC
CTCGCCGTGCGCTACCAGAAGGAGCACAAGCGGCATCTGGCCCTTAAGGC
AGCCGGATTGGCCAACTTCGAGGAGGGCGCCGTGGGACACATCAATCCCG
ATCTGACCCTGGACGAGCAGGCGGAACTGCTGCCCTACAATCGGGAATTC
GAGTTCCCACGGGAAAACCTGAAACTGGGCAAGCAACTCGGAGCCGGAGC
ATTTGGCGTTGTGCTCAAGGGCGAGGCCAAGGGCATCCGGCGAGAGGAGC
CCACCACCACGGTGGCCGTCAAAATGGTCAAGGCGACGGCTGACAACGAG
GTGGTGCGGGCACTGGTCTCCGAGCTCAAGATCATGGTACATCTGGGACA
GCACTTGAATGTGGTCAATCTCCTGGGTGCAGTTACCAAAAATATTGCGA
AGCGCGAACTAATGGTCATTGTGGAATACTGTCGCTTTGGCAACATACAG
AACTTCCTTCTGAGGAACAGAAAGTGCTTTATCAATCAAATCAATCCAGA
CACCGATCACATTGACCCCAGCATCATGACCCAGCGCATGTCCGACAACT
ACGAACTGCACCGCGATACGAATGGTGGTGGCTTGAAGTACGCCAATGTC
GGTTTCCCGATCCACTCTTACATTAATGAGCCGCACAACAATAACACGCA
ACCGCCAACTCATCGCAGAAATTCGGACAATGATCCCCGATCGGGCACCC
GAGCCGGACGAACCGGATCCGGAACAGCCACCTACAGCTACGACCGTCAG
ATGGATACCTGTGCCACCGTAATGACCACCGTCCCAGAAGACGATCAAAT
AATGTCCAATAACTCCGTACAACCCGCCTGGCGTTCCAATTACAAAACCG
ACTCCACGGAGGCGATGACAGTGACCACTGTGGATTTGATCAGTTGGGCA
TTCCAAGTGGCAAGGGGCATGGATTACTTGTCCTCCAAGAAGGTGTTGCA
CGGCGATCTGGCCGCTAGAAATATTCTCCTCTGCGAGGACAATGTGGTAA
AGATTTGTGACTTTGGTCTGGCTCGATCCATGTATCGAGGTGATAACTAC
AAGAAGTCAGAGAATGGCAAATTGCCCATCAAGTGGCTGGCGCTGGAATC
GCTGAGCGATCATGTGTTCAGCACATACAGCGATGTTTGGTCCTACGGAA
TTGTTCTATGGGAGATGTTCTCGCTGGCCAAGGTGCCGTATCCGGGCATC
GATCCCAACCAAGAGCTATTTAACAAACTGAACGATGGCTACCGCATGGA
GAAGCCGAAATTTGCCAACCAGGAGCTCTACGAGATTATGCTAGAGTGCT
GGCGAAAGAATCCCGAGAGCAGACCTTTGTTTGCTGAGCTGGAGAAGCGA
TTTGCAAACATGCTGGGCGAGGATGTAGCCAGCCACTACCTGGACCTAAA
CAATCCGTACATGCAGAGCAACATTGAGTACATGAAGAAGCAGTCTACGG
ATTACCTGGCACTGATGGGATCACCCGACGAGCTGGCGCCTGCAGCTCCG
CGCTACGTGAACGGGCACATAGTGCCCGATATACGGGCGCGACAGTCGCC
TACGCTGAGTAACAATCTCAACAGCGGATCGAGTAAGCCGCTCCGCAAGA
AGAACGGCATGCCAACTGTGGATGTGGCAGATCAGGCGCCGGAGGAGATA
CCTATGCTGCATCGCAGCTCCACTGGATCGGATGGAAGTCCGGAACAGGG
AAGGCGCTTCAATCAGGCCCTTAAGCAGCAGTATGTCACGCCCACACCGT
CCCCTCGCCATCATGTGGAGACCAAACTCAATGGGGAGCCATCCGAAAAC
TATGTGAATATGAAGCCACCCAGGAAGAATATACCCGGCAAAACCACAAC
AGGTGGCGGGGGTGCTGCTGCTGGAGCCTCCACGGAGGCCTTCTCGAATC
CCAGCTACCAGCCACTGTCCACCGTCAACGAGAAGGAGCAACGAAGGTAT
GCAAGCTTTCTAGACCAT
BO33135.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:14:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pvr-RI | 4587 | CG8222-PI | 1..4584 | 17..4600 | 22920 | 100 | Plus |
| Pvr-RJ | 4734 | CG8222-PJ | 1..4169 | 17..4185 | 20845 | 100 | Plus |
| Pvr-RL | 4530 | CG8222-PL | 764..3965 | 984..4185 | 16010 | 100 | Plus |
| Pvr-RJ | 4734 | CG8222-PJ | 4316..4731 | 4185..4600 | 2080 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:14:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pvr-RI | 5480 | CG8222-RI | 325..4908 | 17..4600 | 22920 | 100 | Plus |
| Pvr-RJ | 5627 | CG8222-RJ | 325..4493 | 17..4185 | 20845 | 100 | Plus |
| Pvr-RL | 5149 | CG8222-RL | 961..4162 | 984..4185 | 16010 | 100 | Plus |
| Pvr-RJ | 5627 | CG8222-RJ | 4640..5055 | 4185..4600 | 2080 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:14:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8228494..8229012 | 604..86 | 2595 | 100 | Minus |
| 2L | 23513712 | 2L | 8224051..8224533 | 3054..2572 | 2415 | 100 | Minus |
| 2L | 23513712 | 2L | 8225672..8226141 | 1786..1317 | 2350 | 100 | Minus |
| 2L | 23513712 | 2L | 8224593..8225042 | 2573..2124 | 2250 | 100 | Minus |
| 2L | 23513712 | 2L | 8221552..8221967 | 4600..4185 | 2080 | 100 | Minus |
| 2L | 23513712 | 2L | 8225106..8225418 | 2123..1811 | 1565 | 100 | Minus |
| 2L | 23513712 | 2L | 8222892..8223163 | 3710..3439 | 1360 | 100 | Minus |
| 2L | 23513712 | 2L | 8222581..8222832 | 3960..3709 | 1260 | 100 | Minus |
| 2L | 23513712 | 2L | 8223223..8223450 | 3440..3213 | 1140 | 100 | Minus |
| 2L | 23513712 | 2L | 8226929..8227151 | 983..761 | 1115 | 100 | Minus |
| 2L | 23513712 | 2L | 8226210..8226395 | 1316..1131 | 930 | 100 | Minus |
| 2L | 23513712 | 2L | 8223825..8223984 | 3213..3054 | 800 | 100 | Minus |
| 2L | 23513712 | 2L | 8227670..8227826 | 761..605 | 785 | 100 | Minus |
| 2L | 23513712 | 2L | 8222225..8222376 | 4185..4034 | 760 | 100 | Minus |
| 2L | 23513712 | 2L | 8226458..8226606 | 1132..984 | 745 | 100 | Minus |
| 2L | 23513712 | 2L | 8222446..8222518 | 4033..3961 | 365 | 100 | Minus |
| 2L | 23513712 | 2L | 8230125..8230194 | 86..17 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 13:14:03 has no hits.
BO33135.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-18 16:29:51 Download gff for
BO33135.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pvr-RI | 294..4877 | 17..4602 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:52:28 Download gff for
BO33135.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pvr-RI | 325..4908 | 17..4602 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:23:58 Download gff for
BO33135.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pvr-RI | 325..4908 | 17..4602 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:23:58 Download gff for
BO33135.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8223223..8223449 | 3214..3440 | 100 | <- | Minus |
| 2L | 8223825..8223984 | 3054..3213 | 100 | <- | Minus |
| 2L | 8222581..8222830 | 3711..3960 | 100 | <- | Minus |
| 2L | 8222892..8223161 | 3441..3710 | 100 | <- | Minus |
| 2L | 8221550..8221967 | 4185..4602 | 99 | <- | Minus |
| 2L | 8222226..8222376 | 4034..4184 | 100 | <- | Minus |
| 2L | 8222446..8222518 | 3961..4033 | 100 | <- | Minus |
| 2L | 8224052..8224531 | 2574..3053 | 100 | <- | Minus |
| 2L | 8224593..8225042 | 2124..2573 | 100 | <- | Minus |
| 2L | 8225106..8225415 | 1814..2123 | 100 | <- | Minus |
| 2L | 8225486..8225512 | 1787..1813 | 100 | <- | Minus |
| 2L | 8225672..8226141 | 1317..1786 | 100 | <- | Minus |
| 2L | 8226210..8226393 | 1133..1316 | 100 | <- | Minus |
| 2L | 8226458..8226606 | 984..1132 | 100 | <- | Minus |
| 2L | 8226929..8227150 | 762..983 | 100 | <- | Minus |
| 2L | 8227670..8227826 | 605..761 | 100 | <- | Minus |
| 2L | 8228494..8229011 | 87..604 | 100 | <- | Minus |
| 2L | 8230125..8230194 | 17..86 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:52:28 Download gff for
BO33135.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8221550..8221967 | 4185..4602 | 99 | <- | Minus |
| arm_2L | 8222226..8222376 | 4034..4184 | 100 | <- | Minus |
| arm_2L | 8222446..8222518 | 3961..4033 | 100 | <- | Minus |
| arm_2L | 8222581..8222830 | 3711..3960 | 100 | <- | Minus |
| arm_2L | 8222892..8223161 | 3441..3710 | 100 | <- | Minus |
| arm_2L | 8223223..8223449 | 3214..3440 | 100 | <- | Minus |
| arm_2L | 8223825..8223984 | 3054..3213 | 100 | <- | Minus |
| arm_2L | 8224052..8224531 | 2574..3053 | 100 | <- | Minus |
| arm_2L | 8224593..8225042 | 2124..2573 | 100 | <- | Minus |
| arm_2L | 8225106..8225415 | 1814..2123 | 100 | <- | Minus |
| arm_2L | 8225486..8225512 | 1787..1813 | 100 | <- | Minus |
| arm_2L | 8225672..8226141 | 1317..1786 | 100 | <- | Minus |
| arm_2L | 8226210..8226393 | 1133..1316 | 100 | <- | Minus |
| arm_2L | 8226458..8226606 | 984..1132 | 100 | <- | Minus |
| arm_2L | 8226929..8227150 | 762..983 | 100 | <- | Minus |
| arm_2L | 8227670..8227826 | 605..761 | 100 | <- | Minus |
| arm_2L | 8228494..8229011 | 87..604 | 100 | <- | Minus |
| arm_2L | 8230125..8230194 | 17..86 | 100 | | Minus |
BO33135.pep Sequence
Translation from 16 to 4618
> BO33135.pep
MAMLPRLILLPLLLILRISWSDAVPLQQFSPDPDDSIENCGGENGAPLMT
PCKSAIILDAQTSTTLKCEDDEPMSWWTSQSQYVHVKSFDNTEDPARPFG
TSLHLIEVTADYVAAYYCVKTSKFSQIAKEEQSDEAMIELVNQGYASSIY
VYVNDPDTKLVDSHNVVTARQYTDVVIPCKPAMPDTEVLLETSNGEMHSS
KSVGRYDPQRGFTIEIRSIVDGGDYYCRPNPPFPHNEEEMTSIEVRFIAT
GLDIPRTQTTNMVYTYAPGVTDGDDEVLTVTNQSTGNLALIRGGDGTLSR
ERARRSPARLAPMNASPSPRPGQDGKPLPKPVIRSSVEHHVFTDTNFTLD
CEQSAYVESVYGMEWFTPSRDENRIFASQSRTDPKTRNSTHQTGRSTLTV
LNAQPSDTGLYKCVTTDNSNQNVQRATYRIKVLKQNESYLNVGEPSGHYN
VQEYANRTIQMTANFEGFPTPSFSWFKPDGTEVRQSENNFKILSTELSTM
LQVLNAQLQDSGTYVLRGSNSFGVVQREYNVSVMDAPALKMSDAYVQVGS
VARLECTVRSYPPAIVTFFFRPCSLEPQWPTCSVLNQNFSLPSEQEKYQF
QTRPRPGKLSVERIYEVSFLPTEPGILTCIAQNIIDGKERRTLTKAHVLL
GNISENMTIYGFDKDHKIAKEDNVNFTCEALAYHFDGNLKWFINGEDLKE
SDSVHIETSHTKYSYKSTVHITTISDRDRGTYECRAYHNDKDAVYSSREI
DLYVHDPSAPQWTNGGQEGHSKIKRKLSQTLELECASTAVPVAIVRWFKD
DKEVTESKLRHIIEKESKLLITHLYPGDEGVYKCVVENRLDRIERSFTVV
ISDLPGISMAWVWFGVILFLILIGLCVFLAVRYQKEHKRHLALKAAGLAN
FEEGAVGHINPDLTLDEQAELLPYNREFEFPRENLKLGKQLGAGAFGVVL
KGEAKGIRREEPTTTVAVKMVKATADNEVVRALVSELKIMVHLGQHLNVV
NLLGAVTKNIAKRELMVIVEYCRFGNIQNFLLRNRKCFINQINPDTDHID
PSIMTQRMSDNYELHRDTNGGGLKYANVGFPIHSYINEPHNNNTQPPTHR
RNSDNDPRSGTRAGRTGSGTATYSYDRQMDTCATVMTTVPEDDQIMSNNS
VQPAWRSNYKTDSTEAMTVTTVDLISWAFQVARGMDYLSSKKVLHGDLAA
RNILLCEDNVVKICDFGLARSMYRGDNYKKSENGKLPIKWLALESLSDHV
FSTYSDVWSYGIVLWEMFSLAKVPYPGIDPNQELFNKLNDGYRMEKPKFA
NQELYEIMLECWRKNPESRPLFAELEKRFANMLGEDVASHYLDLNNPYMQ
SNIEYMKKQSTDYLALMGSPDELAPAAPRYVNGHIVPDIRARQSPTLSNN
LNSGSSKPLRKKNGMPTVDVADQAPEEIPMLHRSSTGSDGSPEQGRRFNQ
ALKQQYVTPTPSPRHHVETKLNGEPSENYVNMKPPRKNIPGKTTTGGGGA
AAGASTEAFSNPSYQPLSTVNEKEQRRYASFLDH
BO33135.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:37:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pvr-PI | 1528 | CG8222-PI | 1..1528 | 1..1528 | 8061 | 100 | Plus |
| Pvr-PJ | 1577 | CG8222-PJ | 1..1577 | 1..1528 | 8001 | 96.9 | Plus |
| Pvr-PM | 1568 | CG8222-PM | 1..1568 | 1..1528 | 7934 | 96.3 | Plus |
| Pvr-PA | 1509 | CG8222-PA | 253..1509 | 321..1528 | 6308 | 95.9 | Plus |
| Pvr-PE | 1503 | CG8222-PE | 249..1503 | 323..1528 | 6304 | 96 | Plus |
| Pvr-PA | 1509 | CG8222-PA | 1..481 | 1..443 | 1053 | 51.6 | Plus |
